Article(id=1242149203384804104, tenantId=1146029695717560320, journalId=1192105938417971205, issueId=1242149197907042945, articleNumber=null, orderNo=null, doi=10.13343/j.cnki.wsxb.20240404, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=research-article, receivedDate=1719763200000, receivedDateStr=2024-07-01, revisedDate=null, revisedDateStr=null, acceptedDate=1724256000000, acceptedDateStr=2024-08-22, onlineDate=1774081048103, onlineDateStr=2026-03-21, pubDate=1724601600000, pubDateStr=2024-08-26, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1774081048103, onlineIssueDateStr=2026-03-21, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1774081048103, creator=13701087609, updateTime=1774081048103, updator=13701087609, issue=Issue{id=1242149197907042945, tenantId=1146029695717560320, journalId=1192105938417971205, year='2024', volume='64', issue='12', pageStart='4471', pageEnd='4951', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1774081046797, creator=13701087609, updateTime=1774081046797, updator=13701087609, preIssue=null, nextIssue=null, ext=null, issueFiles=null}, startPage=4936, endPage=4951, ext={EN=ArticleExt(id=1242149203812623136, articleId=1242149203384804104, tenantId=1146029695717560320, journalId=1192105938417971205, language=EN, title=Temporal dynamics of bacterial communities in surface water and groundwater in the densely populated area of the Jianghan Plain, columnId=1226236834313847103, journalTitle=Acta Microbiologica Sinica, columnName=Data Paper, runingTitle=null, highlight=null, articleAbstract=
[Objective] To reveal the dynamics of bacterial communities in surface water and groundwater in the densely populated area of the Jianghan Plain across seasons and explore the underlying factors causing the temporal variations. [Methods] Water samples were collected from both surface water and groundwater in the densely populated area of the Jianghan Plain, and metagenomic sequencing was employed to investigate the seasonal variations of bacterial communities. The variations in environmental factors, bacterial community structure, and bacterial community assembly processes in the surface water and groundwater were compared considering rainy and dry seasons. [Results] For the surface water, the salinity (P < 0.01) and conductivity (P < 0.01) during the rainy season were lower than those during the dry season, while no significant seasonal variation was observed in turbidity. For the groundwater, the turbidity was higher in the rainy season than in the dry season (P < 0.05), while neither salinity nor conductivity showcased seasonal variations. The Shannon index of bacteria in the surface water in the rainy season was higher than that in the dry season (P < 0.01), whereas that in the groundwater presented no significant seasonal difference. The principal coordinates analysis and permutational multivariate analysis of variance (P=0.001) revealed significant seasonal variations in bacterial communities between surface water and groundwater. The Mantel test showed no significant correlations between the bacterial community in the groundwater and environmental factors during the dry season, while other communities were significantly correlated with at least one environmental factor. The neutral community model, modified stochasticity ratio (MST), and β nearest taxon index all indicated that stochastic processes exerted stronger effects on the bacterial community in the surface water during the rainy season than during the dry season, and the trend was similar but not significant for the bacterial community in the groundwater. The migration rate of surface water was higher during the rainy season than during the dry season, whereas that of groundwater showed an opposite trend. (5) The seasonal variations in the diversity of antibiotic resistance genes exhibited a negative correlation with MST (ρ=−0.164, P=4.942E−2) in the surface water, whereas the correlation was positive in the groundwater (ρ=0.393, P=1.452E−6). [Conclusion] The temporal dynamics of bacterial communities in surface water and groundwater in the densely populated area of the Jianghan Plain showed notable differences. These differences can potentially be attributed to distinct basic properties between surface water and groundwater, frequent environmental disturbances during the rainy season, and water exchange processes between surface water and groundwater.
, correspAuthors=Kang NING, authorNote=null, correspAuthorsNote=
, copyrightStatement=Copyright ©2024 Acta Microbiologica Sinica. All rights reserved., copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=Jialin TIAN, Dongliang CHU, Haohong ZHANG, Kang NING), CN=ArticleExt(id=1242149207411335175, articleId=1242149203384804104, tenantId=1146029695717560320, journalId=1192105938417971205, language=CN, title=江汉平原人口稠密区地表水和地下水细菌群落的时间动态变化, columnId=1226236834993324389, journalTitle=微生物学报, columnName=数据论文, runingTitle=null, highlight=null, articleAbstract=
【目的】揭示江汉平原人口稠密区地表水和地下水细菌群落在旱季和雨季之间的动态变化,探究产生时间动态差异的原因。【方法】于江汉平原人口稠密区的地表水、地下水采集水样,利用宏基因组测序技术,分析地表水和地下水细菌群落在环境条件、群落结构、群落构建过程的季节间变化差异。【结果】地表水的盐度(P < 0.01)、电导率(P < 0.01)在雨季显著低于旱季,地下水的浊度(P < 0.05)在雨季显著高于旱季,反之则季节间差异不显著。地表水群落Shannon多样性指数在雨季显著高于旱季(P < 0.01),地下水群落差异不显著;主坐标分析(principle coordinates analysis, PCoA)和置换多元方差分析(P=0.001)表明,不同季节间,地表水和地下水的细菌群落间差异显著。Mantel test相关性分析表明,旱季地下水群落与环境因素的相关性不显著,其余群落均与至少一种环境因素显著相关。中性群落模型(neutral community model, NCM)、修正随机性比率(modified stochasticity ratio, MST)与β最近分类单元指数(β nearest taxon index, βNTI)均表明,地表水群落在雨季受到随机性过程的影响明显高于旱季,地下水存在相似但不明显的趋势;地表水的迁移率在雨季高于旱季,而地下水的变化趋势相反。地表水群落中,季节间抗生素抗性基因(antibiotic resistance genes, ARGs)多样性变化值与MST值负相关(ρ=−0.164, P=4.942E−2);地下水群落则呈现正相关关系(ρ=0.393, P=1.452E−6)。【结论】江汉平原人口稠密区地表水和地下水细菌群落的时间动态变化存在差异。地表水和地下水基本性质的差异、雨季频繁的环境扰动,以及地表水、地下水之间的水体交换过程可能是导致上述差异的原因。
, correspAuthors=宁康, authorNote=null, correspAuthorsNote=null, copyrightStatement=版权所有©《微生物学报》编辑部2024, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=JkTIYrIwTwyTw5IkFZjVOg==, magXml=0KGkkXhgbllEENgKjSb4Mw==, pdfUrl=null, pdf=Thz51+5JzMBzKMLW5kQbkQ==, pdfFileSize=1441485, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=7gB9SDxTjA7RlfGrycmX2A==, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=crrpVFyhwHORublKr0J5Xw==, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=田家林, 楚栋良, 张皓鸿, 宁康)}, authors=[Author(id=1243293083023032949, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, orderNo=0, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, 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344:118705., articleTitle=Comprehensive overview of antibiotic distribution, risk and priority: a study of large-scale drinking water sources from the Lower Yangtze River, refAbstract=null)], funds=[Fund(id=1243293087770985316, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=32071465, language=EN, fundingSource=National Natural Science Foundation of China(32071465), fundOrder=null, country=null), Fund(id=1243293087913591658, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=32071465, language=CN, fundingSource=国家自然科学基金(32071465), fundOrder=null, country=null), Fund(id=1243293088043615088, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=31871334, language=EN, fundingSource=National Natural Science Foundation of China(31871334), fundOrder=null, country=null), Fund(id=1243293088131695476, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=31871334, language=CN, fundingSource=国家自然科学基金(31871334), fundOrder=null, country=null), Fund(id=1243293088249135994, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=2023YFA1800900, language=EN, fundingSource=National Key Research and Development Program of China(2023YFA1800900), fundOrder=null, country=null), Fund(id=1243293088387548039, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=2023YFA1800900, language=CN, fundingSource=国家重点研发计划(2023YFA1800900), fundOrder=null, country=null), Fund(id=1243293088509182863, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=2018YFC0910502, language=EN, fundingSource=National Key Research and Development Program of China(2018YFC0910502), fundOrder=null, country=null), Fund(id=1243293088660177816, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, awardId=2018YFC0910502, language=CN, fundingSource=国家重点研发计划(2018YFC0910502), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1243293082909786735, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, xref=null, ext=[AuthorCompanyExt(id=1243293082918175344, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, companyId=1243293082909786735, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=Key Laboratory of Molecular Biophysics of the Ministry of Education, Hubei Key Laboratory of Bioinformatics and Molecular Imaging, Center of Artificial Intelligence Biology, Department of Bioinformatics and System Biology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, Hubei, China), AuthorCompanyExt(id=1243293082922369648, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, companyId=1243293082909786735, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=华中科技大学 生命科学与技术学院, 分子生物物理教育部重点实验室, 生物信息与分子成像湖北省重点实验室, 人工智能生物学研究中心, 生物信息与系统生物学系, 湖北 武汉 430074)])], figs=[ArticleFig(id=1243293085933880072, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 1, caption=
Overview of the research area and the distribution of sampling locations. A: The geographical location of the Jianghan Plain. B: The distribution of sampling positions. C: Land use types in the Jianghan Plain. D: The average annual precipitation in the Jianghan Plain. The land use data is sourced from the GlobeLand30 dataset of the Ministry of Natural Resources, People's Republic of China, downloaded from the National Catalogue Service For Geographic Information (https://www.webmap.cn/). The precipitation data is sourced from the spatial interpolation dataset of the average condition of meteorological elements in China[18], downloaded from the Resource and Environmental Science Data Platform (https://www.resdc.cn/)., figureFileSmall=9UaSdcJN5Ynq1KVsI8oN6Q==, figureFileBig=ZORsSpZPTmhODD23HRGjYQ==, tableContent=null), ArticleFig(id=1243293086005183244, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图1, caption=
研究区概况与采样点位置分布A:江汉平原的地理位置. B:采样位置分布. C:江汉平原土地利用类型. D:江汉平原年平均降水量. 土地利用数据来源于中华人民共和国自然资源部GlobeLand30数据集,下载自全国地理信息资源目录服务系统(https://www.webmap.cn/). 降水量数据来源于中国气象要素平均状况空间插值数据集[18],下载自资源环境科学数据平台(https://www.resdc.cn/)
, figureFileSmall=9UaSdcJN5Ynq1KVsI8oN6Q==, figureFileBig=ZORsSpZPTmhODD23HRGjYQ==, tableContent=null), ArticleFig(id=1243293086160372501, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 2, caption=
The bacterial community composition at the genus level in surface water (A) and groundwater (B)., figureFileSmall=zWt14yJn5n9HuXbALKN7aQ==, figureFileBig=0q+vwcrtkKZ3jPLGUSZFzQ==, tableContent=null), ArticleFig(id=1243293086240064282, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图2, caption=
地表水(A)和地下水(B)细菌群落的属水平组成, figureFileSmall=zWt14yJn5n9HuXbALKN7aQ==, figureFileBig=0q+vwcrtkKZ3jPLGUSZFzQ==, tableContent=null), ArticleFig(id=1243293086319756062, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 3, caption=
Analysis of the biodiversity of bacterial communities in surface water and groundwater. A: Shannon index. B: Chao1 index. C: Principle coordinates analysis (PCoA). Using Bray-Curtis distance as similarity distance in PCoA. Wilcoxon test, NS.: No significance; *: P < 0.05; **: P < 0.01; ***: P < 0.001; ****: P < 0.000 1., figureFileSmall=VXZSPkYSjnisXUsoN/CWIw==, figureFileBig=JHd8bhVPoPwaBiu2YL1CnQ==, tableContent=null), ArticleFig(id=1243293086453973796, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图3, caption=
地表水和地下水细菌群落多样性分析A:Shannon多样性指数. B:Chao1多样性指数. C:主坐标分析(PCoA). PCoA中选取Bray-Curtis距离作为相似性距离
, figureFileSmall=VXZSPkYSjnisXUsoN/CWIw==, figureFileBig=JHd8bhVPoPwaBiu2YL1CnQ==, tableContent=null), ArticleFig(id=1243293086558831400, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 4, caption=
Differences in environmental factors of surface water (SW) and groundwater (GW) communities between seasons. Wilcoxon test, NS.: No significance; *: P < 0.05; **: P < 0.01; ***: P < 0.001; ****: P < 0.000 1., figureFileSmall=4srm1dE0AupZLov2Iu3uIA==, figureFileBig=JRxsYYsviKU7Sl0YwYfGyg==, tableContent=null), ArticleFig(id=1243293086672077614, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图4, caption=
地表水(SW)和地下水(GW)群落在季节间的环境因素差异, figureFileSmall=4srm1dE0AupZLov2Iu3uIA==, figureFileBig=JRxsYYsviKU7Sl0YwYfGyg==, tableContent=null), ArticleFig(id=1243293086776935216, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 5, caption=
Mantel test of surface water (A) and groundwater (B) in different seasons. The similarity distance matrix is calculated based on the Bray-Curtis distance. The correlation significance between environmental factors is given through Spearman correlation test, *: P < 0.05; **: P < 0.01; ***: P < 0.001., figureFileSmall=dC/fP4NrT4h68nn548oj0A==, figureFileBig=E20twNs22p9kMKDF/xKcLA==, tableContent=null), ArticleFig(id=1243293086877598515, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图5, caption=
不同季节地表水(A)和地下水(B)细菌群落的Mantel test相关性分析基于Bray-Curtis距离计算相似性矩阵. 环境因素的相关性显著性通过Spearman相关性检验进行计算
, figureFileSmall=dC/fP4NrT4h68nn548oj0A==, figureFileBig=E20twNs22p9kMKDF/xKcLA==, tableContent=null), ArticleFig(id=1243293086986650422, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 6, caption=
The bacterial community assembly processes in surface water and groundwater. A−D: NCM fitting results of surface water communities in dry season (A) and rainy season (B), groundwater communities in dry season (C) and rainy season (D). E: MST values of surface water and groundwater communities. F: βNTI values of surface water and groundwater communities. G: The relative proportion of community assembly processes. Wilcoxon test, NS.: No significance; ****: P < 0.000 1., figureFileSmall=cZ0lXRe74dJuHH01A5oLOA==, figureFileBig=bMYDRplAxVv2Ys+RJupldA==, tableContent=null), ArticleFig(id=1243293087104090939, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图6, caption=
地表水和地下水细菌群落构建过程A−D:旱季地表水群落(A)、雨季地表水群落(B)、旱季地下水群落(C)、雨季地下水群落(D)的NCM拟合结果. E:地表水和地下水群落的MST值. F:地表水和地下水群落的βNTI值. G:群落构建过程的相对比例
, figureFileSmall=cZ0lXRe74dJuHH01A5oLOA==, figureFileBig=bMYDRplAxVv2Ys+RJupldA==, tableContent=null), ArticleFig(id=1243293087213142850, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 7, caption=
The top 10 antibiotic resistance genes with the highest relative abundance in bacterial communities of surface water (A) and groundwater (B)., figureFileSmall=DsKgsFYzvmhhr2Qo+0UPWw==, figureFileBig=iP47EEo6St3CQkzYm2UyfA==, tableContent=null), ArticleFig(id=1243293087309611847, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图7, caption=
地表水(A)和地下水(B)细菌群落中相对丰度最高的10种抗生素抗性基因, figureFileSmall=DsKgsFYzvmhhr2Qo+0UPWw==, figureFileBig=iP47EEo6St3CQkzYm2UyfA==, tableContent=null), ArticleFig(id=1243293087452218194, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=EN, label=Figure 8, caption=
Linear regression analysis of ARGs and community assembly processes. A: Surface water communities. B: Groundwater communities., figureFileSmall=loGl/njdUWpp67qkS60VFg==, figureFileBig=eGwiIcnZUsJhz68nkNJNUg==, tableContent=null), ArticleFig(id=1243293087552881495, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1242149203384804104, language=CN, label=图8, caption=
ARGs与群落构建过程的线性回归分析A:地表水群落. B:地下水群落
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