Article(id=1204800729945977819, tenantId=1146029695717560320, journalId=1192105938417971205, issueId=1204800727341310425, articleNumber=null, orderNo=null, doi=10.13343/j.cnki.wsxb.20250392, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=research-article, receivedDate=1747324800000, receivedDateStr=2025-05-16, revisedDate=null, revisedDateStr=null, acceptedDate=1748534400000, acceptedDateStr=2025-05-30, onlineDate=1765176478134, onlineDateStr=2025-12-08, pubDate=1764777600000, pubDateStr=2025-12-04, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1765176478134, onlineIssueDateStr=2025-12-08, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1765176478134, creator=13701087609, updateTime=1765176478134, updator=13701087609, issue=Issue{id=1204800727341310425, tenantId=1146029695717560320, journalId=1192105938417971205, year='2025', volume='65', issue='12', pageStart='5191', pageEnd='5649', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1765176477513, creator=13701087609, updateTime=1765176611928, updator=13701087609, preIssue=null, nextIssue=null, ext={EN=IssueExt(id=1204801291189986067, tenantId=1146029695717560320, journalId=1192105938417971205, issueId=1204800727341310425, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1204801291189986068, tenantId=1146029695717560320, journalId=1192105938417971205, issueId=1204800727341310425, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null}, startPage=5452, endPage=5468, ext={EN=ArticleExt(id=1204800730206024675, articleId=1204800729945977819, tenantId=1146029695717560320, journalId=1192105938417971205, language=EN, title=Effect of inoculating associative nitrogen-fixing bacteria on the root-associated bacterial community of sugarcane, columnId=1192149543992045670, journalTitle=Acta Microbiologica Sinica, columnName=Research Article, runingTitle=null, highlight=null, articleAbstract=

Objective To investigate the effect of inoculating the associative nitrogen-fixing bacteria strain Paraburkholderia RBCS-17 on the root-associated bacterial community of sugarcane. Methods We employed 16S rRNA gene high-throughput sequencing combined with QIIME 2-based bioinformatics analysis to investigate the effects of inoculating Paraburkholderia RBCS-17 on the alpha diversity, beta diversity, composition, and co-occurrence network of the root-associated bacterial community of sugarcane. Results Inoculating Paraburkholderia RBCS-17 did not significantly affect the diversity but significantly changed the structure of the root-associated bacterial community. Further studies showed that the inoculation significantly increased the relative abundance of Burkholderia, Dyella, and Pseudomonas, while reducing the relative abundance of certain potentially detrimental bacteria such as Ralstonia. In addition, the inoculation altered the key module composition of the bacterial co-occurrence network in sugarcane roots, which suggested that inoculation might influence potential bacterial interactions. Conclusion Inoculating the associative nitrogen-fixing bacterial strain Paraburkholderia RBCS-17 modified the root-associated bacterial community structure of sugarcane, promoting the enrichment of potentially beneficial bacteria while suppressing potentially harmful ones. These findings provide new insights into the intricate interactions among associative nitrogen-fixing bacteria, host plants, and indigenous bacteria.

, correspAuthors=Yongjia ZHONG, authorNote=null, correspAuthorsNote=, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=Ruirui LI, Ran LIU, Hong LIAO, Yongjia ZHONG), CN=ArticleExt(id=1204800733183979618, articleId=1204800729945977819, tenantId=1146029695717560320, journalId=1192105938417971205, language=CN, title=接种联合固氮菌对甘蔗根系相关细菌群落的影响, columnId=1192149544164012138, journalTitle=微生物学报, columnName=研究报告, runingTitle=null, highlight=null, articleAbstract=

目的 研究接种联合固氮菌副伯克霍尔德氏菌(Paraburkholderia) RBCS-17对甘蔗根系相关细菌群落的影响。 方法 采用16S rRNA基因高通量测序技术，结合基于QIIME 2的生物信息分析，探究接种联合固氮菌Paraburkholderia RBCS-17对甘蔗根系相关细菌群落的α多样性、β多样性、细菌组成及细菌共现网络的影响。 结果 接种联合固氮菌Paraburkholderia RBCS-17对甘蔗根系细菌群落多样性的影响不显著，但显著改变了根系细菌群落的结构。深入研究表明，接种固氮菌显著提高了伯克霍尔德氏菌属(Burkholderia)、戴氏菌属(Dyella)和假单胞菌属(Pseudomonas)的相对丰度，同时降低了某些潜在有害细菌如罗尔斯通氏菌属(Ralstonia)的相对丰度。此外，接种处理还改变了甘蔗根系细菌共现网络的关键模块组成，表明接种联合固氮菌可能影响了细菌之间潜在的相互作用。 结论 接种联合固氮菌Paraburkholderia RBCS-17能够通过改变甘蔗根系细菌群落结构，促进潜在有益细菌的富集，抑制潜在有害细菌，为联合固氮菌-植物-土著细菌复杂的相互作用提供了新的见解。

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A: Box plot of sugarcane root-associated bacterial alpha diversity based on Shannon index; B: Box plot of sugarcane root-associated bacterial alpha diversity based on Simpson index; C: Box plot of sugarcane root-associated bacterial alpha diversity based on ACE index; D: Box plot of sugarcane root-associated bacterial alpha diversity based on Chao1 index. ns: No significant difference., figureFileSmall=tJfP+5QaOS8jZ4F/c1t1oA==, figureFileBig=L5EoJg/wNi2E35giAjDkug==, tableContent=null), ArticleFig(id=1217784597849493706, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=图1, caption=接种联合固氮菌甘蔗根系相关细菌的α多样性分析。A：基于Shannon指数的甘蔗根系相关细菌的α多样性箱线图；B：基于Simpson指数的甘蔗根系相关细菌的α多样性箱线图；C：基于丰度的覆盖估计值(abundance-based coverage estimator, ACE)指数的甘蔗根系相关细菌α多样性箱线图；D：基于Chao1指数的甘蔗根系相关细菌的α多样性箱线图。ns：无显著差异。, figureFileSmall=tJfP+5QaOS8jZ4F/c1t1oA==, figureFileBig=L5EoJg/wNi2E35giAjDkug==, tableContent=null), ArticleFig(id=1217784598134706395, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=EN, label=Figure 2, caption=PCoA, MDS, and ANOSIM analyses of sugarcane root-associated bacteria inoculated with combined nitrogen-fixing bacteria. A: PCoA plot based on Bray-Curtis distance matrix; B: PCoA plot based on Jaccard similarity index; C: PCoA plot based on Unweighted UniFrac distance matrix; D: PCoA plot based on Weighted UniFrac distance matrix (85% confidence interval ellipses shown for each treatment); E: Scatter plot derived from MDS analysis; F: Boxplot of ANOSIM analysis. The R-value ranges from -1 to 1. When R>0, differences between groups are greater than within groups (P<0.05 indicates statistical significance)., figureFileSmall=QjP2B/siK/bffg3cg2oF+A==, figureFileBig=VPVkpVRUD+xRcfbw6oYNSw==, tableContent=null), ArticleFig(id=1217784598239564008, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=图2, caption=接种联合固氮菌甘蔗根系相关细菌的PCoA分析、MDS分析及ANOSIM分析。A：基于Bray-Curtis距离矩阵绘制的PCoA图；B：基于Jarcard相似度绘制的PCoA图；C：基于Unweighted UniFrac距离矩阵绘制PCoA图；D：基于Weighted UniFrac距离矩阵绘制的PCoA图(每个处理使用圆圈表示85%置信区间范围)；E：基于MDS分析绘制的散点图；F：ANOSIM分析绘制的箱图[R-value介于(-1，1)之间，当R>0时说明组间差异大于组内差异，P<0.05表示统计具有显著性]。, figureFileSmall=QjP2B/siK/bffg3cg2oF+A==, figureFileBig=VPVkpVRUD+xRcfbw6oYNSw==, tableContent=null), ArticleFig(id=1217784598344421617, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=EN, label=Figure 3, caption=Composition analysis of sugarcane root-associated bacteria at the order and genus levels under different treatments. A: Stacked bar plot showing order-level taxonomic composition of sugarcane root-associated bacteria across treatments; B: Stacked bar plot showing genus-level taxonomic composition of sugarcane root-associated bacteria across treatments., figureFileSmall=a8vxUDLbUtY5Q/4WgQXOIQ==, figureFileBig=TEUs8RhIh/h6iVD3H1hUfg==, tableContent=null), ArticleFig(id=1217784598491222273, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=图3, caption=不同处理下甘蔗根系相关细菌在目及属分类水平下的组成分析。A：不同处理下甘蔗根系相关细菌目水平物种组成堆叠柱状图；B：不同处理下甘蔗根系相关细菌属水平物种组成堆叠柱状图。, figureFileSmall=a8vxUDLbUtY5Q/4WgQXOIQ==, figureFileBig=TEUs8RhIh/h6iVD3H1hUfg==, tableContent=null), ArticleFig(id=1217784598612857098, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=EN, label=Figure 4, caption=LEfSe analysis of the LDA distribution bar diagram and the evolutionary branch diagram. A: LDA score distribution histogram from LEfSe analysis; B: Cladogram of differentially abundant taxa from LEfSe analysis., figureFileSmall=lfUVLgqsv+vpBPXXASRL2g==, figureFileBig=M8hjzHIBMDwDTw38XFF66A==, tableContent=null), ArticleFig(id=1217784598738686227, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=图4, caption=LEfSe分析的LDA分布柱状图与进化分支图。A：LEfSe分析LDA分布柱状图；B：LEfSe分析进化分支图。, figureFileSmall=lfUVLgqsv+vpBPXXASRL2g==, figureFileBig=M8hjzHIBMDwDTw38XFF66A==, tableContent=null), ArticleFig(id=1217784598830960925, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=EN, label=Figure 5, caption=Analysis of species abundance differences in STAMP software at family and genus levels. A: Family-level taxonomic bar plot showing treatment-specific differences in sugarcane root-associated bacteria; B: Genus-level taxonomic bar plot illustrating treatment-group variations in sugarcane root-associated bacteria., figureFileSmall=ihoZ/r/ywgPssLR3fM+VCw==, figureFileBig=4t+k0rMy1YDSEseOJUG3Uw==, tableContent=null), ArticleFig(id=1217784599153922347, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=图5, caption=STAMP软件分析科水平和属水平下的差异物种。A：甘蔗根系相关细菌科水平的组间差异分析；B：甘蔗根系相关细菌属水平的组间差异分析。, figureFileSmall=ihoZ/r/ywgPssLR3fM+VCw==, figureFileBig=4t+k0rMy1YDSEseOJUG3Uw==, tableContent=null), ArticleFig(id=1217784599254585649, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=EN, label=Figure 6, caption=Co-occurrence network of root-associated bacterial under different treatments. A: Co-occurrence network of sugarcane root-associated bacteria at the genus level in the control group; B: Co-occurrence network of sugarcane root-associated bacteria at the genus level in the inoculated group., figureFileSmall=U5IKZItS7D2KKOGcs1ukhQ==, figureFileBig=RqdFSyQbcx59zcxS79o8rg==, tableContent=null), ArticleFig(id=1217784599334277436, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=图6, caption=不同处理的根系相关细菌共现网络。A：对照组甘蔗根系相关细菌属水平的共现网络图；B：接种组甘蔗根系相关细菌属水平的共现网络图。, figureFileSmall=U5IKZItS7D2KKOGcs1ukhQ==, figureFileBig=RqdFSyQbcx59zcxS79o8rg==, tableContent=null), ArticleFig(id=1217784599455912263, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=EN, label=Table 1, caption=

Co-occurrence network topology parameters of root-associated bacterial under different treatments

, figureFileSmall=null, figureFileBig=null, tableContent=

处理 Treatment	节点数 Nodes number	边数 Edges number	节点平均度 Node average degrees	聚类系数 Clustering coefficient	模块化 Modularity
Control	82	131	3.195	0.923	0.918
Inoculation	81	124	3.062	0.901	0.713

), ArticleFig(id=1217784599564964173, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1204800729945977819, language=CN, label=表1, caption=

不同处理的根系相关细菌共现网络拓扑参数

, figureFileSmall=null, figureFileBig=null, tableContent=

处理 Treatment	节点数 Nodes number	边数 Edges number	节点平均度 Node average degrees	聚类系数 Clustering coefficient	模块化 Modularity
Control	82	131	3.195	0.923	0.918
Inoculation	81	124	3.062	0.901	0.713

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