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The mandarin fish (Siniperca chuatsi) is one of the most economically important cultured fish species in Asian countries. With the expansion of artificial farming, infectious diseases have become a major threat to the mandarin fish farming industry, posing a challenge to its sustainable development. Siniperca chuatsi rhabdovirus (SCRV) is a major pathogen infecting this fish species. In recent years, substantial progress has been made in the research on SCRV, yet no comprehensive review is currently available. This paper summarizes and discusses the research advances in SCRV, including viral characteristics, virus rescue, host-virus interactions, and prevention strategies, while also analyzing the current challenges in this field.
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鳜鱼是亚洲国家极为重要的经济养殖鱼类之一。随着人工养殖规模不断扩大,传染病的发生成为鳜鱼养殖业的重要危害因素,也是鳜鱼养殖产业发展的突出问题。鳜鱼弹状病毒(Siniperca chuatsi rhabdovirus, SCRV)是感染鳜鱼的一种重要病原体。近几年,SCRV的研究取得了较大进展,目前尚无相关综述文章。本文就SCRV的病毒特性、病毒拯救、与宿主互作关系及防控策略等方面的研究进展进行综述与讨论,并对面临的问题展开分析。
, correspAuthors=魏永伟, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=r5Rcq+PmdrWJzmBBChGLGA==, magXml=ARENY1NnT9Ff/z8erkdIxA==, pdfUrl=null, pdf=gfMUcvgdOON5XdAGG7eP9g==, pdfFileSize=1308788, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=2ol/DzJBj3Ev++CW6mzlFg==, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=Yq87uhHeEl4HPvxxbFSZYg==, mapNumber=null, authorCompany=null, fund=null, authors=
作者贡献声明
刘晓瑜:文献检索归纳和整理,论文初稿撰写;张建华:基因组序列下载收集,序列分析,图表制作;朱晓薇:miRNA、lncRNA和circRNA文献整理分析;魏永伟:文章整体框架构思和设计,文章综合审校和定稿。
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Veterinary Microbiology,
2013,
162(1): 78-84., articleTitle=Stability and inactivation of vesicular stomatitis virus, a prototype rhabdovirus, refAbstract=null)], funds=[Fund(id=1226557135916548882, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, awardId=LY14C180001, language=EN, fundingSource=Natural Science Foundation of Zhejiang Province(LY14C180001), fundOrder=null, country=null), Fund(id=1226557136017212186, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, awardId=LY14C180001, language=CN, fundingSource=浙江省自然科学基金(LY14C180001), fundOrder=null, country=null), Fund(id=1226557136147235620, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, awardId=13011001002/245, language=EN, fundingSource=Shaoxing University Talent Introduction Program(13011001002/245), fundOrder=null, country=null), Fund(id=1226557136289841967, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, awardId=13011001002/245, language=CN, fundingSource=绍兴文理学院人才引进项目(13011001002/245), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1226557123866313195, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, xref=null, ext=[AuthorCompanyExt(id=1226557123870507500, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, companyId=1226557123866313195, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=School of Medicine, Shaoxing University, Shaoxing, Zhejiang, China), AuthorCompanyExt(id=1226557123878896109, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, companyId=1226557123866313195, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=绍兴文理学院 医学院,浙江 绍兴)])], figs=[ArticleFig(id=1226557131357340321, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=EN, label=Figure 1, caption=
Schematic representation of the SCRV genome and virion. A: Genomic organization of SCRV; B: Structural model of SCRV virion., figureFileSmall=KDokrnCR6u+PAbZb7fJuvw==, figureFileBig=5AFkPbxhzJ9zTzbUb/K9aQ==, tableContent=null), ArticleFig(id=1226557131445420714, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=CN, label=图1, caption=
SCRV基因组及病毒粒子结构模式图。A:SCRV基因组结构;B:SCRV粒子结构模式图。, figureFileSmall=KDokrnCR6u+PAbZb7fJuvw==, figureFileBig=5AFkPbxhzJ9zTzbUb/K9aQ==, tableContent=null), ArticleFig(id=1226557131579638453, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=EN, label=Figure 2, caption=
Phylogenetic tree of complete genomes of SCRV and other members in the genus of Siniperhavirus. The strains without designated names in the phylogenetic tree are directly labeled with their GenBank accession numbers following the virus names. The scale bar at the bottom of the phylogenetic tree represents the scale of the tree. The ticks on the scale bar indicate the degree of variation, with the notation “×100” in parentheses indicating the magnification factor for the number of nucleotide substitutions., figureFileSmall=aoqGzbyUuKnmli2mpf7Aog==, figureFileBig=vB+LvR19a3qFgKjNSCOxiA==, tableContent=null), ArticleFig(id=1226557131671913150, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=CN, label=图2, caption=
SCRV及中国鲈鱼病毒属中各毒株全基因组发育树。发育树中无毒株名称的在病毒名称后直接显示GenBank号;发育树下方标尺表示发育树的比例尺,标尺上的刻度代表变异程度,括号中×100表示核苷酸替换数的放大倍数。, figureFileSmall=aoqGzbyUuKnmli2mpf7Aog==, figureFileBig=vB+LvR19a3qFgKjNSCOxiA==, tableContent=null), ArticleFig(id=1226557131801936580, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=EN, label=Figure 3, caption=
Schematic diagram illustrating the mechanisms of miRNA, lncRNA, and circRNA in SCRV infection. The X protein represents a specific upstream protein in the NF-κB/IRF3 signaling pathway, such as MAVS or TRIF, as mentioned in the main text. miRNAs can bind to the 3′ untranslated region (3′ UTR) of the mRNA encoding the X protein, leading to translational repression or mRNA degradation. lncRNAs and circRNAs can act as molecular sponges to sequester miRNAs, thereby indirectly regulating the NF-κB/IRF3 signaling pathway. Additionally, lncRNAs may serve as precursors of miRNAs and be processed into mature miRNAs, while circRNAs can encode peptides or proteins to directly modulate viral replication or the NF-κB/IRF3 pathway., figureFileSmall=pkbWVyRYr4WNx/Dbg5X09w==, figureFileBig=HwaMw5rie7WMPG6y2VCraA==, tableContent=null), ArticleFig(id=1226557135077688019, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=CN, label=图3, caption=
miRNA、lncRNA和circRNA抗SCRV感染原理模式图。X蛋白为NF-κB/IRF3信号通路上游某个特定蛋白,如正文中提到的MAVS、TRIF等,miRNA通过与负责编码X蛋白质的mRNA的3′非编码区结合,引起mRNA翻译抑制或诱导其降解。lncRNA和circRNA可分别发挥RNA分子海绵效应吸附miRNA,进而间接达到调控NF-κB/IRF3信号通路的目的。此外,lncRNA可作为miRNA的前体,经加工成熟后转变为miRNA;circRNA也可通过编码多肽或蛋白质直接调控病毒复制或NF-κB/IRF3信号通路。, figureFileSmall=pkbWVyRYr4WNx/Dbg5X09w==, figureFileBig=HwaMw5rie7WMPG6y2VCraA==, tableContent=null), ArticleFig(id=1226557135270626009, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=EN, label=Table 1, caption=
The whole genomic identity between Siniperhavirus
, figureFileSmall=null, figureFileBig=null, tableContent=
| Virus name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 |
|---|
| SCRV | SCRV | SCRV | SCRV | SCRV | MSRV | MSRV | MSRV | MSRV | MSRV | MSRV | HSRV | HSRV | HSRV | SHVV | CrERV | CrERV | IHSV |
|---|
| 1 | 100 | 96.8 | 97.4 | 97.4 | 92.7 | 97.3 | 97.5 | 97.6 | 97.1 | 96.9 | 97.3 | 93.1 | 93.2 | 91.9 | 92.1 | 93.1 | 92.9 | 92.3 |
| 2 | | 100 | 96.1 | 96.1 | 94.6 | 96.1 | 96.2 | 96.4 | 95.9 | 95.5 | 96.0 | 94.9 | 95.0 | 93.4 | 93.8 | 95.0 | 94.6 | 94.1 |
| 3 | | | 100 | 99.3 | 92.3 | 97.9 | 99.3 | 98.3 | 99.1 | 98.8 | 99.2 | 92.7 | 92.7 | 91.5 | 91.8 | 92.6 | 92.4 | 92.0 |
| 4 | | | | 100 | 92.3 | 98.0 | 99.2 | 98.4 | 99.5 | 99.5 | 99.6 | 92.7 | 92.8 | 91.4 | 91.7 | 92.6 | 92.4 | 92.1 |
| 5 | | | | | 100 | 92.1 | 92.2 | 92.3 | 91.9 | 91.7 | 92.2 | 93.3 | 93.3 | 92.0 | 92.4 | 93.1 | 92.9 | 92.5 |
| 6 | | | | | | 100 | 98.1 | 99.4 | 97.8 | 97.5 | 98.2 | 92.6 | 92.7 | 91.4 | 91.7 | 92.5 | 92.3 | 91.8 |
| 7 | | | | | | | 100 | 98.6 | 99.1 | 98.8 | 99.2 | 92.8 | 92.8 | 91.5 | 91.8 | 92.6 | 92.4 | 92.1 |
| 8 | | | | | | | | 100 | 98.2 | 98.0 | 98.3 | 92.9 | 93.0 | 91.7 | 92.0 | 92.8 | 92.5 | 92.1 |
| 9 | | | | | | | | | 100 | 99.0 | 99.5 | 92.5 | 92.5 | 91.2 | 91.5 | 92.3 | 92.1 | 91.8 |
| 10 | | | | | | | | | | 100 | 99.2 | 92.2 | 92.3 | 91.0 | 91.3 | 92.1 | 91.9 | 91.6 |
| 11 | | | | | | | | | | | 100 | 92.7 | 92.7 | 91.4 | 91.7 | 92.6 | 92.4 | 92.0 |
| 12 | | | | | | | | | | | | 100 | 99.9 | 96.9 | 97.3 | 93.5 | 93.2 | 92.8 |
| 13 | | | | | | | | | | | | | 100 | 96.9 | 97.3 | 93.5 | 93.2 | 92.8 |
| 14 | | | | | | | | | | | | | | 100 | 98.9 | 92.4 | 92.0 | 91.6 |
| 15 | | | | | | | | | | | | | | | 100 | 92.7 | 92.3 | 91.9 |
| 16 | | | | | | | | | | | | | | | | 100 | 98.2 | 94.5 |
| 17 | | | | | | | | | | | | | | | | | 100 | 94.1 |
| 18 | | | | | | | | | | | | | | | | | | 100 |
), ArticleFig(id=1226557135438398183, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=CN, label=表1, caption=
中国鲈鱼病毒属全基因组同源性
, figureFileSmall=null, figureFileBig=null, tableContent=
| Virus name | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 |
|---|
| SCRV | SCRV | SCRV | SCRV | SCRV | MSRV | MSRV | MSRV | MSRV | MSRV | MSRV | HSRV | HSRV | HSRV | SHVV | CrERV | CrERV | IHSV |
|---|
| 1 | 100 | 96.8 | 97.4 | 97.4 | 92.7 | 97.3 | 97.5 | 97.6 | 97.1 | 96.9 | 97.3 | 93.1 | 93.2 | 91.9 | 92.1 | 93.1 | 92.9 | 92.3 |
| 2 | | 100 | 96.1 | 96.1 | 94.6 | 96.1 | 96.2 | 96.4 | 95.9 | 95.5 | 96.0 | 94.9 | 95.0 | 93.4 | 93.8 | 95.0 | 94.6 | 94.1 |
| 3 | | | 100 | 99.3 | 92.3 | 97.9 | 99.3 | 98.3 | 99.1 | 98.8 | 99.2 | 92.7 | 92.7 | 91.5 | 91.8 | 92.6 | 92.4 | 92.0 |
| 4 | | | | 100 | 92.3 | 98.0 | 99.2 | 98.4 | 99.5 | 99.5 | 99.6 | 92.7 | 92.8 | 91.4 | 91.7 | 92.6 | 92.4 | 92.1 |
| 5 | | | | | 100 | 92.1 | 92.2 | 92.3 | 91.9 | 91.7 | 92.2 | 93.3 | 93.3 | 92.0 | 92.4 | 93.1 | 92.9 | 92.5 |
| 6 | | | | | | 100 | 98.1 | 99.4 | 97.8 | 97.5 | 98.2 | 92.6 | 92.7 | 91.4 | 91.7 | 92.5 | 92.3 | 91.8 |
| 7 | | | | | | | 100 | 98.6 | 99.1 | 98.8 | 99.2 | 92.8 | 92.8 | 91.5 | 91.8 | 92.6 | 92.4 | 92.1 |
| 8 | | | | | | | | 100 | 98.2 | 98.0 | 98.3 | 92.9 | 93.0 | 91.7 | 92.0 | 92.8 | 92.5 | 92.1 |
| 9 | | | | | | | | | 100 | 99.0 | 99.5 | 92.5 | 92.5 | 91.2 | 91.5 | 92.3 | 92.1 | 91.8 |
| 10 | | | | | | | | | | 100 | 99.2 | 92.2 | 92.3 | 91.0 | 91.3 | 92.1 | 91.9 | 91.6 |
| 11 | | | | | | | | | | | 100 | 92.7 | 92.7 | 91.4 | 91.7 | 92.6 | 92.4 | 92.0 |
| 12 | | | | | | | | | | | | 100 | 99.9 | 96.9 | 97.3 | 93.5 | 93.2 | 92.8 |
| 13 | | | | | | | | | | | | | 100 | 96.9 | 97.3 | 93.5 | 93.2 | 92.8 |
| 14 | | | | | | | | | | | | | | 100 | 98.9 | 92.4 | 92.0 | 91.6 |
| 15 | | | | | | | | | | | | | | | 100 | 92.7 | 92.3 | 91.9 |
| 16 | | | | | | | | | | | | | | | | 100 | 98.2 | 94.5 |
| 17 | | | | | | | | | | | | | | | | | 100 | 94.1 |
| 18 | | | | | | | | | | | | | | | | | | 100 |
), ArticleFig(id=1226557135547450097, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=EN, label=Table 2, caption=
miRNA, lncRNA, circRNA, and the targeting molecules
, figureFileSmall=null, figureFileBig=null, tableContent=
| RNA type | RNA name | Targeting molecule | Function mode | References |
|---|
| miRNA | miR-217 | TGF-b-activated kinase 1 (TAK1) | Inhibition of protein expression (IPE) | [38] |
| miR-217-5p | Nucleotide oligomerization domain 1 (NOD1) | IPE | [39] |
| miR-3570 | Mitochondrial antiviral signaling protein (MAVS) | IPE | [40] |
| miR-122 | MAVS | IPE | [41] |
| miR-2187 | Tumor necrosis factor receptor related factor 6 (TRAF6) | IPE | [42] |
| miR-2187-3p | TANK-binding kinase 1 (TBK1) | IPE | [43] |
| miR-181b-2 | TIR-domain-containing adapter-inducing interferon-b (TRIF) | IPE | [44] |
| miR-21-1 | TRIF | IPE | [44] |
| miR-210 | Stimulator of IFN genes (STING) | IPE | [45] |
| miR-214 | N and P genes of SCRV | Inhibition of viral replication | [46] |
| lncRNA | MIR2187HG | miR-2187-3p | Pre-miRNA | [43] |
| MIR122HG | miR-122, miR-122-5p | Pre-miRNA | [47-48] |
| lncRNA AANCR | miR-210 | Sponge effect | [49] |
| lncRNA MARL | miR-122 | Sponge effect | [41] |
| lncRNA NARL | miR-217-5p | Sponge effect | [39] |
| circRNA | circRasGEF1B | miR-21-3p (targeting MITA) | Sponge effect | [50] |
| circCBL | miR-125a-1-3p (targeting MITA) | Sponge effect | [51] |
| circDtx1 | miR-15a-5p (targeting TRIF) | Sponge effect | [52] |
| circSamd4a | miR-29a-3p (targeting STING) | Sponge effect | [53] |
| circRNF217 | miR-130-3p (targeting NOD1) | Sponge effect | [54] |
| circBCL2L1 | miR-30c-3-3p (targeting TRAF6) | Sponge effect | [55] |
| circPIKfyve | miR-21-3p (targeting MAVS) | Sponge effect | [56] |
| circVPS13D | VPS13D-170aa (targeting MAVS) | Coding protein | [57] |
| circMORC3 | MORC3-84aa (targeting TRIF) | Coding protein | [58] |
| circYthdc2 | Ythdc2-170aa (targeting STING) | Coding protein | [59] |
| circNLRP12 | NLRP12-119aa (targeting SCRV) | Coding protein | [60] |
), ArticleFig(id=1226557135652307707, tenantId=1146029695717560320, journalId=1192105938417971205, articleId=1217471092973818404, language=CN, label=表2, caption=
miRNA、lncRNA、circRNA及其靶向分子
, figureFileSmall=null, figureFileBig=null, tableContent=
| RNA type | RNA name | Targeting molecule | Function mode | References |
|---|
| miRNA | miR-217 | TGF-b-activated kinase 1 (TAK1) | Inhibition of protein expression (IPE) | [38] |
| miR-217-5p | Nucleotide oligomerization domain 1 (NOD1) | IPE | [39] |
| miR-3570 | Mitochondrial antiviral signaling protein (MAVS) | IPE | [40] |
| miR-122 | MAVS | IPE | [41] |
| miR-2187 | Tumor necrosis factor receptor related factor 6 (TRAF6) | IPE | [42] |
| miR-2187-3p | TANK-binding kinase 1 (TBK1) | IPE | [43] |
| miR-181b-2 | TIR-domain-containing adapter-inducing interferon-b (TRIF) | IPE | [44] |
| miR-21-1 | TRIF | IPE | [44] |
| miR-210 | Stimulator of IFN genes (STING) | IPE | [45] |
| miR-214 | N and P genes of SCRV | Inhibition of viral replication | [46] |
| lncRNA | MIR2187HG | miR-2187-3p | Pre-miRNA | [43] |
| MIR122HG | miR-122, miR-122-5p | Pre-miRNA | [47-48] |
| lncRNA AANCR | miR-210 | Sponge effect | [49] |
| lncRNA MARL | miR-122 | Sponge effect | [41] |
| lncRNA NARL | miR-217-5p | Sponge effect | [39] |
| circRNA | circRasGEF1B | miR-21-3p (targeting MITA) | Sponge effect | [50] |
| circCBL | miR-125a-1-3p (targeting MITA) | Sponge effect | [51] |
| circDtx1 | miR-15a-5p (targeting TRIF) | Sponge effect | [52] |
| circSamd4a | miR-29a-3p (targeting STING) | Sponge effect | [53] |
| circRNF217 | miR-130-3p (targeting NOD1) | Sponge effect | [54] |
| circBCL2L1 | miR-30c-3-3p (targeting TRAF6) | Sponge effect | [55] |
| circPIKfyve | miR-21-3p (targeting MAVS) | Sponge effect | [56] |
| circVPS13D | VPS13D-170aa (targeting MAVS) | Coding protein | [57] |
| circMORC3 | MORC3-84aa (targeting TRIF) | Coding protein | [58] |
| circYthdc2 | Ythdc2-170aa (targeting STING) | Coding protein | [59] |
| circNLRP12 | NLRP12-119aa (targeting SCRV) | Coding protein | [60] |
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