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科技导报
| 专题:土壤生态学 2022, 40(3): 112-120
贝叶斯推断在土壤微生物生物地理学中的应用
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柳旭, 马玉颖, 高贵锋, 范坤坤, 杨腾, 褚海燕
作者信息
通讯作者:
褚海燕(通信作者),研究员,研究方向为土壤微生物学,电子信箱:hychu@issas.ac.cn
Application of Bayesian inference in soil microbial biogeography
LIU Xu, MA Yuying, GAO Guifeng, FAN Kunkun, YANG Teng, CHU Haiyan
Affiliations
出版时间: 2022-02-13
doi: 10.3981/j.issn.1000-7857.2022.03.010
文章导航
微生物生物地理学主要研究微生物的分布格局及其驱动机制,经典频率数理统计方法是当前该研究领域中广泛使用的统计方法。近年来,贝叶斯推断作为重要的随机模拟数理统计方法正不断地应用于土壤微生物生物地理学的研究中。介绍了贝叶斯推断与经典频率数理统计的区别;描述了贝叶斯推断在土壤微生物生物地理学研究中的基本分析流程,包括模型构建、模型拟合和模型优化;评价了贝叶斯推断在该研究领域中的自身优势、应用潜力和发展方向;并以岛屿生物地理学理论为研究框架,利用模拟数据,进行了贝叶斯推断流程演示。提出贝叶斯推断未来有望成为研究土壤微生物生物地理学中复杂数据和开展模型模拟的重要工具之一,在土壤微生物生物地理学中具有广阔的应用前景。
土壤微生物生物地理学
/
贝叶斯推断
/
经典频率统计
/
马尔科夫链蒙特卡洛抽样
Microbial biogeography mainly focuses on the distribution patterns of microorganisms and their driving mechanisms,and currently classical frequency mathematical and statistical methods are widely used in this field.In recent years,Bayesian inference has been continuously applied as an important random simulation mathematical statistics method for soil microbial biogeographical study.In this paper,we briefly introduce the differences between Bayesian inference and classical frequency mathematical statistics,and highlight the basic analytical process of Bayesian inference in soil microbial biogeographical study in terms of model construction,model fitting,and model improvement.We also evaluate the advantages,application potentials and development directions of Bayesian inference in this field and demonstrate the Bayesian inference process using simulated data with island biogeography theory as the research framework.Finally,we give an outlook on the application prospects of Bayesian inference in soil microbial biogeography.We believe that Bayesian inference will become one of the important tools for studying complex data and conducting model simulations in soil microbial biogeography.
soil microbial biogeography
/
Bayesian inference
/
classical frequency statistics
/
Markov chain Monte Carlo sampling
柳旭, 马玉颖, 高贵锋, 范坤坤, 杨腾, 褚海燕.
贝叶斯推断在土壤微生物生物地理学中的应用.
科技导报,
2022
, 40
(3)
: 112
-120
.
DOI: 10.3981/j.issn.1000-7857.2022.03.010
LIU Xu, MA Yuying, GAO Guifeng, FAN Kunkun, YANG Teng, CHU Haiyan.
Application of Bayesian inference in soil microbial biogeography[J].
Science & Technology Review ,
2022
, 40
(3)
: 112
-120
.
DOI: 10.3981/j.issn.1000-7857.2022.03.010
2022年第40卷第3期
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BibTeX
文章信息
doi: 10.3981/j.issn.1000-7857.2022.03.010
接收时间:2021-07-19
首发时间:2022-03-25
出版时间:2022-02-13
收稿日期:2021-07-19
修回日期:2021-11-22
通讯作者:
褚海燕(通信作者),研究员,研究方向为土壤微生物学,电子信箱:hychu@issas.ac.cn
https://castjournals.cast.org.cn/joweb/kjdb/CN/10.3981/j.issn.1000-7857.2022.03.010
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2种不同金属材料的力学参数
科 Family 属数 Number of genus 种数 Number of species 占总种数比例 Percentage of total species (%) 属 Genus 种数 Number of species 占总种数比例 Percentage of total species (%) 鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78 小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39 多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39 红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87 小菇属 Mycena 11 5.26 光柄菇属 Pluteus 5 2.39 红菇属 Russula 17 8.13 栓菌属 Trametes 5 2.39
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