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细粒棘球绦虫AgB1抗原表位的生物信息学预测
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科技导报 | 研究论文 2013, 31(27): 27-30
细粒棘球绦虫AgB1抗原表位的生物信息学预测
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马秀敏1,2, 胡晓安1,2, 阿尔孜古丽·吐尔逊1, 李艳华2, 刘学磊2, 朱明2, 丁剑冰2
作者信息
    1. 新疆医科大学第一附属医院, 省部共建国家重点实验室培育基地——新疆重大疾病医学重点实验室, 乌鲁木齐 830054;2. 新疆医科大学基础医学院, 乌鲁木齐 830011

通讯作者:

丁剑冰,教授,研究方向为感染免疫,电子信箱:djbing002@163.com
Bioinformatics Prediction of AgB1 Antigen Epitopes of Echinococcus granulosus
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出版时间: 2013-09-28 doi: 10.3981/j.issn.1000-7857.2013.27.003
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以细粒棘球绦虫AgB1基因序列为基础,采用PredictProtein软件预测其编码蛋白的二级结构;应用在线预测软件Bcepred、Abcpred、IEDB及SYFPEITHI等对细粒棘球绦虫AgB1的B细胞表位和T细胞表位进行预测。结果提示,AgB1抗原蛋白存在可以构成抗原表位的区域,经软件分析,分值高的B细胞表位区域:2~9、15~20、22~35和41~52氨基酸序列;T细胞表位区域:3~12、26~33、34~44和52~61氨基酸序列。研究运用生物信息学确定AgB1抗原的4个B细胞优势表位和4个T细胞优势表位,对进一步研究AgB1的抗原性和研发更有价值的免疫诊断方法具有重要意义。
AgB1  /  B细胞表位  /  T细胞表位  /  生物信息学
The secondary structure, B cell and T cell epitopes for the AgB1 antigen protein of Echinococcus granulosus were predicted and analyzed. According to the gene sequences of AgB1 antigen, the protein secondary structure was analyzed by PredictProtein, and B cell and T cell epitopes of AgB1 were predicted by Internet website Bcepred, Abcpred, IEDB and SYFPEITHI. The results show that many distinct antigenic epitopes of AgB1 were identified by computation, and the high scored B cell epitopes in the regions of 2-9, 15-20, 22-35 and 41-52. The possible T cell epitopes is in the regions of 3-12, 26-33, 34-44 and 52-61. In this study it is determined that there are 4 B cell dominant epitopes and 4 T cell ones in AgB1 antigen by bioinformatics methods,which are significant in the further research of AgB1 antigenic and development of the immune diagnosis method.
AgB1  /  B cell epitopes  /  T cell epitopes  /  bioinformatics
马秀敏;胡晓安;阿尔孜古丽·吐尔逊;李艳华;刘学磊;朱明;丁剑冰. 细粒棘球绦虫AgB1抗原表位的生物信息学预测. 科技导报, 2013 , 31 (27) : 27 -30 . DOI: 10.3981/j.issn.1000-7857.2013.27.003
MA Xiumin;HU Xiaoan;TUERXUN Arzgul;LI Yanhua;LIU Xuelei;ZHU Ming;DING Jianbing. Bioinformatics Prediction of AgB1 Antigen Epitopes of Echinococcus granulosus[J]. Science & Technology Review, 2013 , 31 (27) : 27 -30 . DOI: 10.3981/j.issn.1000-7857.2013.27.003
2013年第31卷第27期
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doi: 10.3981/j.issn.1000-7857.2013.27.003
  • 接收时间:2012-12-21
  • 首发时间:2013-09-28
  • 出版时间:2013-09-28
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  • 收稿日期:2012-12-21
  • 修回日期:2013-08-20
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丁剑冰,教授,研究方向为感染免疫,电子信箱:djbing002@163.com
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2种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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