Article(id=1256518448314761230, tenantId=1146029695717560320, journalId=1255847803461844995, issueId=1256518442379763982, articleNumber=null, orderNo=null, doi=10.13346/j.mycosystema.250188, pmid=null, cstr=32115.14.j.mycosystema.250188, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=research-article, receivedDate=1750262400000, receivedDateStr=2025-06-19, revisedDate=null, revisedDateStr=null, acceptedDate=1753372800000, acceptedDateStr=2025-07-25, onlineDate=1777506943062, onlineDateStr=2026-04-30, pubDate=1774108800000, pubDateStr=2026-03-22, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1777506943062, onlineIssueDateStr=2026-04-30, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1777506943062, creator=13701087609, updateTime=1777506943062, updator=13701087609, issue=Issue{id=1256518442379763982, tenantId=1146029695717560320, journalId=1255847803461844995, year='2026', volume='45', issue='3', pageStart='240320', pageEnd='250282', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1777506941647, creator=13701087609, updateTime=1777507117568, updator=13701087609, preIssue=null, nextIssue=null, ext={EN=IssueExt(id=1256519180338213460, tenantId=1146029695717560320, journalId=1255847803461844995, issueId=1256518442379763982, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1256519180338213461, tenantId=1146029695717560320, journalId=1255847803461844995, issueId=1256518442379763982, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null}, startPage=250188, endPage=, ext={EN=ArticleExt(id=1256518450512576539, articleId=1256518448314761230, tenantId=1146029695717560320, journalId=1255847803461844995, language=EN, title=Whole-genome analysis of 35
Hericium erinaceus strains from Jilin Province, columnId=1256263562373226548, journalTitle=Mycosystema, columnName=Research paper, runingTitle=null, highlight=null, articleAbstract=
Currently, research on regional genetic diversity and population genetic structure of Hericium erinaceus remains relatively scarce. Additionally, the analysis of the genetic background of germplasm resources has largely relied on fragmented molecular markers, lacking a comprehensive landscape of genome-wide variations, and thereby hindering the progress of genetic improvement. In this study, whole-genome resequencing of 35 H. erinaceus germplasm resources from Jilin Province was performed. Based on variation data such as single nucleotide polymorphisms (SNPs) and small insertions/deletions (InDels), their genetic structure, evolutionary relationships, and diversity characteristics were systematically analyzed. Population genetic structure analysis revealed that the optimal number of clusters was K=2, with significant genetic isolation between the cultivated strains and wild populations (Fst=0.079 8-0.090 4), indicating that artificial selection has led to a significant deviation in the genomic genetic background of the cultivated populations from wild populations. Genetic distance and linkage disequilibrium (LD) analyses showed low genetic differentiation among wild populations (Fst=0.022 5- 0.030 5) with an LD decay distance of 6-15 kb (r2<0.3), reflecting a coexistence pattern of geographical isolation and gene flow. Gene flow simulation confirmed weak gene flow to the cultivated strains only from the wild populations of Songshan Town and Changbai Mountain, with no genetic contribution from the wild populations of Huangsongdian Town and Manjiang Town. Principal component analysis (PCA) validated the geographical clustering of strains (the first three principal components explained 6.81%, 3.35%, and 3.31% of the genetic variation, respectively) and simultaneously revealed that artificial selection had led to abnormal genomic genetic characteristics in the cultivated strains. This study provides crucial genomic data support for the precise conservation and targeted genetic improvement of H. erinaceus germplasm resources. By deciphering genetic patterns, it aids in broadening the genetic basis of cultivated populations and promotes sustainable industrial development.
, correspAuthors=Shujing SUN, authorNote=null, correspAuthorsNote=
, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=Xingyue MA, Tianjiao WANG, Xiaolong LIN, Xun YAO, Jialan ZHENG, Liding CHEN, Shujing SUN), CN=ArticleExt(id=1256518454719463496, articleId=1256518448314761230, tenantId=1146029695717560320, journalId=1255847803461844995, language=CN, title=三十五份吉林省猴头菇菌株的全基因组序列分析, columnId=1256263563312771301, journalTitle=菌物学报, columnName=研究论文, runingTitle=null, highlight=null, articleAbstract=
目前猴头菇区域性遗传多样性与群体遗传结构研究相对匮乏，且种质资源遗传背景解析多依赖片段化分子标记，缺乏全基因组水平变异全景图谱，限制了遗传改良进程。本研究对吉林省35份猴头菇种质资源开展全基因组重测序，基于单核苷酸多态性(SNP)、小片段插入缺失(InDel)等变异数据，系统解析其遗传结构、进化关系与多样性特征。群体遗传结构分析显示最优分群数为K=2，主栽菌株与野生群体遗传隔离显著(Fst=0.079 8-0.090 4)，人工选育导致主栽菌株基因组遗传背景显著偏离野生群体；遗传距离与连锁不平衡分析表明，野生群体遗传分化程度较低(Fst=0.022 5-0.030 5)，LD衰减距离6-15 kb (r2<0.3)，呈现地理隔离与基因交流共存的规律；基因流模拟证实仅松山镇和长白山野生群体向主栽菌株存在弱基因流，黄松甸镇、漫江镇野生群体无遗传贡献；主成分分析验证菌株聚类的地域性特征(前3个主成分解释6.81%、3.35%、3.31%遗传变异)，同时揭示人工选育导致主栽菌株基因组遗传特征异常。本研究为猴头菇种质资源精准保护、定向遗传改良提供了关键基因组学数据支撑，通过解析遗传规律助力拓宽栽培菌株遗传基础，推动产业可持续发展。
, correspAuthors=孙淑静, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=SdvUbkcTMH0HifUcrTKJrw==, magXml=W9/+Cv0eWqogwFPJYvC2Bg==, pdfUrl=null, pdf=5Iq+Ikg6jZ104+o06Jrxow==, pdfFileSize=945888, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=z43l4EnRMFAy0ZQyfZmyJg==, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=GNI3KXJPKEFSMzq41eaigg==, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=马星月, 王天娇, 林晓龙, 姚勋, 郑佳澜, 陈利丁, 孙淑静)}, authors=[Author(id=1256518458045546598, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, orderNo=0, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1256518458318176365, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, authorId=1256518458045546598, language=EN, stringName=Xingyue MA, firstName=Xingyue, middleName=null, lastName=MA, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
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1, 2, address=1 College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian, China
2 Gutian Research Institute of Edible Fungi, Fujian Agriculture and Forestry University, Ningde 352200, Fujian, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1256518471890944218, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, authorId=1256518469290475724, language=CN, stringName=陈利丁, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
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45(5): 28-32, 41, articleTitle=一株野生猴头菇的生物学特性及栽培模式研究, refAbstract=null), Reference(id=1256518503167869429, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, doi=null, pmid=null, pmcid=null, year=2020, volume=39, issue=6, pageStart=1016, pageEnd=1028, url=null, language=null, rfNumber=[50], rfOrder=49, authorNames=沈颖越, 金群力, 蔡为明, 范丽军, 冯伟林, 宋婷婷, journalName=菌物学报, refType=null, unstructuredReference=沈颖越, 金群力, 蔡为明, 范丽军, 冯伟林, 宋婷婷,
2020. 基于重测序信息的金针菇菌株资源遗传多样性及群体结构分析.
菌物学报,
39(6): 1016-1028, articleTitle=基于重测序信息的金针菇菌株资源遗传多样性及群体结构分析, refAbstract=null), Reference(id=1256518503268532727, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, doi=null, pmid=null, pmcid=null, year=2024, volume=37, issue=3, pageStart=28, pageEnd=34, url=null, language=null, rfNumber=[51], rfOrder=50, authorNames=宋琳琳, 陈红芝, 毋柳柳, 李畅, 孟丽, 孔维丽, journalName=中国瓜菜, refType=null, unstructuredReference=宋琳琳, 陈红芝, 毋柳柳, 李畅, 孟丽, 孔维丽,
2024. 基于重测序的23份香菇种质资源全基因组序列分析.
中国瓜菜,
37(3): 28-34, articleTitle=基于重测序的23份香菇种质资源全基因组序列分析, refAbstract=null), Reference(id=1256518503385973241, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, doi=null, pmid=null, pmcid=null, year=2009, volume=30, issue=23, pageStart=270, pageEnd=273, url=null, language=null, rfNumber=[52], rfOrder=51, authorNames=王磊, 宿红艳, 滕长英, 韩立亚, 辛成齐, journalName=食品科学, refType=null, unstructuredReference=王磊, 宿红艳, 滕长英, 韩立亚, 辛成齐,
2009. 中国猴头菇栽培菌株的系统进化研究.
食品科学,
30(23): 270-273, articleTitle=中国猴头菇栽培菌株的系统进化研究, refAbstract=null), Reference(id=1256518503478247931, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, doi=null, pmid=null, pmcid=null, year=2017, volume=15, issue=3, pageStart=188, pageEnd=194, url=null, language=null, rfNumber=[53], rfOrder=52, authorNames=周祖法, 陆娜, 宋吉玲, 王燕飞, 李海波, 魏海龙, journalName=菌物研究, refType=null, unstructuredReference=周祖法, 陆娜, 宋吉玲, 王燕飞, 李海波, 魏海龙,
2017. 猴头菇菌株亲缘关系评价和菌株特异性分子标记筛选.
菌物研究,
15(3): 188-194, articleTitle=猴头菇菌株亲缘关系评价和菌株特异性分子标记筛选, refAbstract=null)], funds=[Fund(id=1256518491914551658, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, awardId=2024N0055, language=EN, fundingSource=Agricultural Guiding Project, Science and Technology Commissioner Mission Special Project of Key Edible Mushroom Industry Chain of Fujian Province(2024N0055), fundOrder=null, country=null), Fund(id=1256518492073935212, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, awardId=2024N0055, language=CN, fundingSource=福建省农业引导性项目科技特派团服务食用菌重点产业链专项(2024N0055), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1256518455822565457, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, xref=null, ext=[AuthorCompanyExt(id=1256518455864508498, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, companyId=1256518455822565457, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1 College of Life Sciences, Fujian Agriculture and Forestry University, Fuzhou 350002, Fujian, China), AuthorCompanyExt(id=1256518455914840149, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, companyId=1256518455822565457, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1 福建农林大学生命科学学院，福建 福州 350002)]), AuthorCompany(id=1256518456267161691, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, xref=null, ext=[AuthorCompanyExt(id=1256518456288133212, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, companyId=1256518456267161691, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2 Gutian Research Institute of Edible Fungi, Fujian Agriculture and Forestry University, Ningde 352200, Fujian, China), AuthorCompanyExt(id=1256518456296521821, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, companyId=1256518456267161691, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2 福建农林大学(古田)菌业研究院，福建 宁德 352200)])], figs=[ArticleFig(id=1256518485736341793, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 1, caption=
Distribution and quantity information of SNP marker density of 12 nuclear chromosomes and partial scaffolds of Hericium erinaceus. Chr1-Chr12 are the 12 nuclear chromosomes of the reference genome of H. erinaceus (GCA_006506795.2), and Chr13 and subsequent numbers (e.g., Chr20, Chr39) are scaffolds unanchored to the chromosome level., figureFileSmall=RZVjcFFwtext5cHyZXOGNg==, figureFileBig=z43l4EnRMFAy0ZQyfZmyJg==, tableContent=null), ArticleFig(id=1256518486050914596, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图1, caption=
猴头菇12条核染色体及部分scaffolds的SNP标记密度分布和数量信息 Chr1-Chr12为猴头菇参考基因组(GCA_006506795.2)的12条核染色体，Chr13及之后编号(如Chr20、Chr39)为未锚定到染色体水平的scaffolds, figureFileSmall=RZVjcFFwtext5cHyZXOGNg==, figureFileBig=z43l4EnRMFAy0ZQyfZmyJg==, tableContent=null), ArticleFig(id=1256518486495510827, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 2, caption=
NJ phylogenetic tree of Hericium erinaceus strains based on SNP data. ‘A-E’ are used solely to denote major evolutionary clades (Clade A-E), with classification based on branch support values (bootstrap≥70%) and not artificially defined groups., figureFileSmall=hWKU+26ejw3pDjDuORfyAA==, figureFileBig=Ope+Zl+e9JemIWgxaE28vg==, tableContent=null), ArticleFig(id=1256518486575202606, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图2, caption=
基于SNP数据的猴头菇资源的聚类NJ进化树 图中‘A-E’仅用于标识主要进化分支(Clade A-E)，划分依据为分支支持度(bootstrap≥70%)，非人为定义类群, figureFileSmall=hWKU+26ejw3pDjDuORfyAA==, figureFileBig=Ope+Zl+e9JemIWgxaE28vg==, tableContent=null), ArticleFig(id=1256518486852026674, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 3, caption=
Principal component analysis (PCA) of Hericium erinaceus strains., figureFileSmall=wzJIKGmx64IYQvhqwPdsfg==, figureFileBig=oabsquUYLF4uLZGNIk+rRQ==, tableContent=null), ArticleFig(id=1256518486956884277, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图3, caption=
猴头菇菌株的主成分分析, figureFileSmall=wzJIKGmx64IYQvhqwPdsfg==, figureFileBig=oabsquUYLF4uLZGNIk+rRQ==, tableContent=null), ArticleFig(id=1256518487070130488, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 4, caption=
Cross-validation error value., figureFileSmall=GlESFMvFU3dA6nDsqO9tKw==, figureFileBig=e1Bj6l5iXjNOTNsv8CS08g==, tableContent=null), ArticleFig(id=1256518487330177338, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图4, caption=
交叉验证的误差值, figureFileSmall=GlESFMvFU3dA6nDsqO9tKw==, figureFileBig=e1Bj6l5iXjNOTNsv8CS08g==, tableContent=null), ArticleFig(id=1256518487468589374, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 5, caption=
Population genetic structure of Hericium erinaceus., figureFileSmall=3G/AVA5k6KHiP+IMYJ8AMA==, figureFileBig=Y3fNw/shqta/CyT6IBrxtA==, tableContent=null), ArticleFig(id=1256518487602807103, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图5, caption=
猴头菇的群体结构分析, figureFileSmall=3G/AVA5k6KHiP+IMYJ8AMA==, figureFileBig=Y3fNw/shqta/CyT6IBrxtA==, tableContent=null), ArticleFig(id=1256518489280528706, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 6, caption=
Linkage disequilibrium pattern analysis. Curves represent LD decay patterns of four wild geographic populations: Group_C (population of Changbai Mountain), Group_H (population of Songshan Town), Group_M (population of Manjiang Town), Group_S (population of Huangsongdian Town). LD was measured by squared correlation coefficient (r2) between SNPs (PopLDdecay software). The dashed line indicates the threshold for LD decay (r2=0.5 × maximum r2), and the corresponding x-axis value is the LD decay distance., figureFileSmall=i5MedVxfgOOk+rqBVcaPQw==, figureFileBig=ZU1xZ6Alg3j7w4oOp+9h0A==, tableContent=null), ArticleFig(id=1256518489536381255, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图6, caption=
连锁不平衡模式分析 曲线代表4个野生地理群体的连锁不平衡衰减模式：Group_C (长白山群体)、Group_H (松山镇群体)、Group_M (漫江镇群体)、Group_S (黄松甸镇群体)；连锁不平衡程度通过SNP间的平方相关系数(r2)衡量(PopLDdecay软件)；虚线表示连锁不平衡衰减阈值(r2=0.5×最大r2值)，对应的x轴数值为群体的连锁不平衡衰减距离, figureFileSmall=i5MedVxfgOOk+rqBVcaPQw==, figureFileBig=ZU1xZ6Alg3j7w4oOp+9h0A==, tableContent=null), ArticleFig(id=1256518489720930634, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Fig. 7, caption=
Gene flow analysis of Hericium erinaceus. Arrows indicate gene introgression or migration events between populations, representing the direction of gene flow. The heatmap illustrates the weight of gene introgression, with darker arrow colors indicating higher weights. Each branch represents a population, and the horizontal branch lengths correspond to the percentage of genetic drift experienced by each branch. The x-axis denotes the genetic drift parameter. Abbreviations: C, Changbai Mountain strains; H, Songshan Town strains; S, Huangsongdian Town strains; M, Manjiang Town strains; G, the cultivated strain., figureFileSmall=amuO2AndLBfvh7qt18RvWA==, figureFileBig=hBnEwCMXHOw/wgbO+kRkbw==, tableContent=null), ArticleFig(id=1256518489934840139, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=图7, caption=
猴头菇基因流分析 图中的箭头代表群体间发生的基因渗透或迁移事件，即基因流动的方向；热图表示基因渗入的权重，其中箭头颜色越深表示权重越大；每个分支代表一个群体，水平分支的长度表示每个分支已发生的遗传漂变百分比，横坐标代表漂变参数；C代表长白山菌株，H代表松山镇菌株，S代表黄松甸镇菌株，M代表漫江镇菌株，G代表主栽菌株, figureFileSmall=amuO2AndLBfvh7qt18RvWA==, figureFileBig=hBnEwCMXHOw/wgbO+kRkbw==, tableContent=null), ArticleFig(id=1256518490215858512, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Table 1, caption=
Strains of Hericium erinaceus used in this study
, figureFileSmall=null, figureFileBig=null, tableContent=
实验编号
Experimental
serial numbers | 菌株编号
Strain | 学名
Scientific names | 菌株来源
Source |
| C1 | HWW-CBS-01 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C3 | HWW-CBS-03 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C4 | HWW-CBS-04 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C5 | HWW-CBS-05 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C8 | HWW-CBS-08 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C9 | HWW-CBS-09 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C12 | HWW-CBS-12 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C13 | HWW-CBS-13 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| H1 | HWW-SSZ-01 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H2 | HWW-SSZ-02 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H3 | HWW-SSZ-03 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H4 | HWW-SSZ-04 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H5 | HWW-SSZ-05 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H6 | HWW-SSZ-06 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H7 | HWW-SSZ-07 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H8 | HWW-SSZ-08 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H9 | HWW-SSZ-09 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H10 | HWW-SSZ-10 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| S1 | HWW-SDZ-01 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S2 | HWW-SDZ-02 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S3 | HWW-SDZ-03 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S4 | HWW-SDZ-04 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S5 | HWW-SDZ-05 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S6 | HWW-SDZ-06 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S7 | HWW-SDZ-07 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S8 | HWW-SDZ-08 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S9 | HWW-SDZ-09 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| M1 | HWW-MJZ-01 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M2 | HWW-MJZ-02 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M3 | HWW-MJZ-03 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M4 | HWW-MJZ-04 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M5 | HWW-MJZ-05 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M6 | HWW-MJZ-06 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M7 | HWW-MJZ-07 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| GC | GC | H. erinaceus | 青岛联合优鲜科技发展公司
Qingdao United Premium Fresh Technology Development Co., Ltd. |
), ArticleFig(id=1256518490463322451, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=表1, caption=
猴头菇供试菌株
, figureFileSmall=null, figureFileBig=null, tableContent=
实验编号
Experimental
serial numbers | 菌株编号
Strain | 学名
Scientific names | 菌株来源
Source |
| C1 | HWW-CBS-01 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C3 | HWW-CBS-03 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C4 | HWW-CBS-04 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C5 | HWW-CBS-05 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C8 | HWW-CBS-08 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C9 | HWW-CBS-09 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C12 | HWW-CBS-12 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| C13 | HWW-CBS-13 | H. erinaceus | 吉林延边朝鲜族自治州长白山
Changbai Mountain, Yanbian Korean Autonomous Prefecture, Jilin |
| H1 | HWW-SSZ-01 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H2 | HWW-SSZ-02 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H3 | HWW-SSZ-03 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H4 | HWW-SSZ-04 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H5 | HWW-SSZ-05 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H6 | HWW-SSZ-06 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H7 | HWW-SSZ-07 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H8 | HWW-SSZ-08 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H9 | HWW-SSZ-09 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| H10 | HWW-SSZ-10 | H. erinaceus | 吉林吉林市磐石市松山镇
Songshan Town, Panshi City, Jilin City, Jilin |
| S1 | HWW-SDZ-01 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S2 | HWW-SDZ-02 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S3 | HWW-SDZ-03 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S4 | HWW-SDZ-04 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S5 | HWW-SDZ-05 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S6 | HWW-SDZ-06 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S7 | HWW-SDZ-07 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S8 | HWW-SDZ-08 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| S9 | HWW-SDZ-09 | H. erinaceus | 吉林蛟河市黄松甸镇团山子
Tuanshanzi, Huangsongdian Town, Jiaohe City, Jilin |
| M1 | HWW-MJZ-01 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M2 | HWW-MJZ-02 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M3 | HWW-MJZ-03 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M4 | HWW-MJZ-04 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M5 | HWW-MJZ-05 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M6 | HWW-MJZ-06 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| M7 | HWW-MJZ-07 | H. erinaceus | 吉林白山市抚松县漫江镇
Manjiang Town, Fusong County, Baishan City, Jilin |
| GC | GC | H. erinaceus | 青岛联合优鲜科技发展公司
Qingdao United Premium Fresh Technology Development Co., Ltd. |
), ArticleFig(id=1256518490819838295, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Table 2, caption=
The InDel and SNP variations of 35 Hericium erinaceus strains relative to the reference genome
, figureFileSmall=null, figureFileBig=null, tableContent=
菌株
Strains | 插入缺失变异
InDel | 单核苷酸多态性
SNP | 总计
Total |
| C1 | 56 746 | 848 012 | 904 758 |
| C3 | 55 458 | 848 615 | 904 073 |
| C4 | 56 259 | 851 466 | 907 725 |
| C5 | 54 352 | 829 761 | 884 113 |
| C8 | 46 693 | 803 873 | 850 566 |
| C9 | 55 378 | 838 470 | 893 848 |
| C12 | 55 716 | 847 029 | 902 745 |
| C13 | 55 593 | 847 661 | 903 254 |
| H1 | 55 386 | 848 537 | 903 923 |
| H2 | 48 181 | 812 097 | 860 278 |
| H3 | 55 453 | 832 229 | 887 682 |
| H4 | 55 242 | 839 908 | 895 150 |
| H5 | 55 596 | 841 343 | 896 939 |
| H6 | 56 992 | 860 814 | 917 806 |
| H7 | 48 121 | 811 054 | 859 175 |
| H8 | 54 713 | 827 592 | 882 305 |
| H9 | 55 634 | 844 278 | 899 912 |
| H10 | 55 351 | 842 362 | 897 713 |
| S1 | 49 453 | 829 407 | 878 860 |
| S2 | 55 048 | 832 673 | 887 721 |
| S3 | 47 878 | 819 360 | 867 238 |
| S4 | 50 336 | 837 736 | 888 072 |
| S5 | 49 591 | 835 042 | 884 633 |
| S6 | 46 271 | 802 194 | 848 465 |
| S7 | 55 998 | 843 322 | 899 320 |
| S8 | 48 311 | 818 175 | 866 486 |
| S9 | 49 114 | 825 059 | 874 173 |
| M1 | 56 967 | 849 360 | 906 327 |
| M2 | 56 194 | 840 031 | 896 225 |
| M3 | 56 049 | 840 898 | 896 947 |
| M4 | 48 543 | 820 123 | 868 666 |
| M5 | 56 240 | 840 336 | 896 576 |
| M6 | 55 694 | 842 885 | 898 579 |
| M7 | 55 936 | 840 392 | 896 328 |
| GC | 60 661 | 886 319 | 946 980 |
), ArticleFig(id=1256518491046330713, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=表2, caption=
35株猴头菇资源相对于参考基因组的InDel和SNP变异
, figureFileSmall=null, figureFileBig=null, tableContent=
菌株
Strains | 插入缺失变异
InDel | 单核苷酸多态性
SNP | 总计
Total |
| C1 | 56 746 | 848 012 | 904 758 |
| C3 | 55 458 | 848 615 | 904 073 |
| C4 | 56 259 | 851 466 | 907 725 |
| C5 | 54 352 | 829 761 | 884 113 |
| C8 | 46 693 | 803 873 | 850 566 |
| C9 | 55 378 | 838 470 | 893 848 |
| C12 | 55 716 | 847 029 | 902 745 |
| C13 | 55 593 | 847 661 | 903 254 |
| H1 | 55 386 | 848 537 | 903 923 |
| H2 | 48 181 | 812 097 | 860 278 |
| H3 | 55 453 | 832 229 | 887 682 |
| H4 | 55 242 | 839 908 | 895 150 |
| H5 | 55 596 | 841 343 | 896 939 |
| H6 | 56 992 | 860 814 | 917 806 |
| H7 | 48 121 | 811 054 | 859 175 |
| H8 | 54 713 | 827 592 | 882 305 |
| H9 | 55 634 | 844 278 | 899 912 |
| H10 | 55 351 | 842 362 | 897 713 |
| S1 | 49 453 | 829 407 | 878 860 |
| S2 | 55 048 | 832 673 | 887 721 |
| S3 | 47 878 | 819 360 | 867 238 |
| S4 | 50 336 | 837 736 | 888 072 |
| S5 | 49 591 | 835 042 | 884 633 |
| S6 | 46 271 | 802 194 | 848 465 |
| S7 | 55 998 | 843 322 | 899 320 |
| S8 | 48 311 | 818 175 | 866 486 |
| S9 | 49 114 | 825 059 | 874 173 |
| M1 | 56 967 | 849 360 | 906 327 |
| M2 | 56 194 | 840 031 | 896 225 |
| M3 | 56 049 | 840 898 | 896 947 |
| M4 | 48 543 | 820 123 | 868 666 |
| M5 | 56 240 | 840 336 | 896 576 |
| M6 | 55 694 | 842 885 | 898 579 |
| M7 | 55 936 | 840 392 | 896 328 |
| GC | 60 661 | 886 319 | 946 980 |
), ArticleFig(id=1256518491159576925, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Table 3, caption=
Genetic differentiation indices among four Hericium erinaceus populations
, figureFileSmall=null, figureFileBig=null, tableContent=
群体
Population | H | M | S | C |
| H | 0 | | | |
| M | 0.030 5 | 0 | | |
| S | 0.027 3 | 0.023 7 | 0 | |
| C | 0.029 3 | 0.023 8 | 0.022 5 | 0 |
), ArticleFig(id=1256518491394457953, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=表3, caption=
4个猴头菇群体间遗传分化指数
, figureFileSmall=null, figureFileBig=null, tableContent=
群体
Population | H | M | S | C |
| H | 0 | | | |
| M | 0.030 5 | 0 | | |
| S | 0.027 3 | 0.023 7 | 0 | |
| C | 0.029 3 | 0.023 8 | 0.022 5 | 0 |
), ArticleFig(id=1256518491562230114, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=EN, label=Table 4, caption=
Genetic diversity index of Hericium erinaceus
, figureFileSmall=null, figureFileBig=null, tableContent=
群体
Population | 平均观测杂合度
Mean observed
heterozygosity (Ho) | 平均期望杂合度
Mean expected
heterozygosity (He) | 核苷酸多样性指数
Nucleotide diversity
index (π) | 多态性信息含量
Polymorphism
information content | Nei’s 多样性指数
Nei’s diversity
index |
| C | 0.247 | 0.207 | 0.221 | 0.181 | 0.104 |
| H | 0.242 | 0.201 | 0.212 | 0.175 | 0.100 |
| S | 0.235 | 0.199 | 0.233 | 0.174 | 0.099 |
| M | 0.259 | 0.216 | 0.210 | 0.188 | 0.108 |
), ArticleFig(id=1256518491683864932, tenantId=1146029695717560320, journalId=1255847803461844995, articleId=1256518448314761230, language=CN, label=表4, caption=
猴头菇的遗传多样性指数
, figureFileSmall=null, figureFileBig=null, tableContent=
群体
Population | 平均观测杂合度
Mean observed
heterozygosity (Ho) | 平均期望杂合度
Mean expected
heterozygosity (He) | 核苷酸多样性指数
Nucleotide diversity
index (π) | 多态性信息含量
Polymorphism
information content | Nei’s 多样性指数
Nei’s diversity
index |
| C | 0.247 | 0.207 | 0.221 | 0.181 | 0.104 |
| H | 0.242 | 0.201 | 0.212 | 0.175 | 0.100 |
| S | 0.235 | 0.199 | 0.233 | 0.174 | 0.099 |
| M | 0.259 | 0.216 | 0.210 | 0.188 | 0.108 |
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