Article(id=1321785454987432529, tenantId=1146029695717560320, journalId=1316781310003478668, issueId=1321785454333121105, articleNumber=null, orderNo=null, doi=10.11983/CBB24048, pmid=null, cstr=32102.14.CBB24048, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=research-article, receivedDate=1711641600000, receivedDateStr=2024-03-29, revisedDate=null, revisedDateStr=null, acceptedDate=1721664000000, acceptedDateStr=2024-07-23, onlineDate=1793067810054, onlineDateStr=2026-10-27, pubDate=1736438400000, pubDateStr=2025-01-10, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1793067810054, onlineIssueDateStr=2026-10-27, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1793067810054, creator=13701087609, updateTime=1793067810054, updator=13701087609, issue=Issue{id=1321785454333121105, tenantId=1146029695717560320, journalId=1316781310003478668, year='2025', volume='60', issue='1', pageStart='1', pageEnd='143', issueExtLink='null', onlineDate='null', pubDate='1736438400000', pubDateStr='2025-01-10', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1793067809899, creator='13701087609', updateTime=1793068026855, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1321786364417397082, tenantId=1146029695717560320, journalId=1316781310003478668, issueId=1321785454333121105, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1321786364417397083, tenantId=1146029695717560320, journalId=1316781310003478668, issueId=1321785454333121105, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=101, endPage=113, ext={EN=ArticleExt(id=1321785455205536338, articleId=1321785454987432529, tenantId=1146029695717560320, journalId=1316781310003478668, language=EN, title=Advances in the Application of Single-cell Transcriptomics in Plant Growth, Development and Stress Response, columnId=1317485676040409248, journalTitle=Chinese Bulletin of Botany, columnName=SPECIAL TOPICS, runingTitle=null, highlight=null, articleAbstract=

Single-cell transcriptomics has improved the spatiotemporal resolution from multi-cell to single-cell levels, and notable progress in this technique has facilitated the identification of new rare cell types, exploration of intercellular heterogeneity, and mapping of cell developmental trajectories. Single-cell transcriptomics is currently being widely used in various research fields such as plant growth and development, stress response, and environmental adaptability, which helps to more thoroughly and precisely uncover the molecular regulatory mechanisms underlying plant life processes. However, there are numerous challenges associated with the study and analysis of different plant species. In this review, we compare and evaluate various single-cell transcription techniques and processes, summarize plant single-cell studies in recent years, and explore new single-cell analysis tools to support researchers studying plant biology with high precision and dynamics. In addition, we propose future directions in using single-cell transcriptomics technologies to address some of the key challenges in plant research and breeding. Furthermore, some important methods for addressing plant research and breeding with single-cell transcriptomics are discussed, along with their difficulties and potential applications.

, authors=Yaping Wang, Wenquan Bao, Yu’e Bai^*, authorsList=Yaping Wang, Wenquan Bao, Yu’e Bai, authorCompany=null, correspAuthors=Yu’e Bai, authorNote=null, correspAuthorsNote=, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1321785456002454101, articleId=1321785454987432529, tenantId=1146029695717560320, journalId=1316781310003478668, language=CN, title=单细胞转录组学在植物生长发育及胁迫响应中的应用进展, columnId=1317485676191404194, journalTitle=植物学报, columnName=专题论坛, runingTitle=null, highlight=null, articleAbstract=

单细胞转录组学将时空分辨率从多细胞水平转移到单细胞水平, 该技术的快速发展能够更好地揭示新的稀有细胞类型、挖掘细胞间异质性并绘制细胞发育轨迹图。目前, 单细胞转录组学已广泛应用于植物生长发育、应激反应和环境适应等不同研究方向, 有助于更精确、全面地揭示植物生命过程中的分子调控机制。然而, 单细胞转录组学在不同植物中的研究及应用仍面临诸多挑战。该文比较和评估了不同类型的单细胞转录组技术及其流程, 总结了近年来单细胞转录组学在多种植物中的相关研究进展, 并探索了新型单细胞分析工具, 可为以高精度和高动态探究植物生物学的研究人员提供技术支持。最后, 提出了使用单细胞转录组学技术解决植物研究和育种中的一些关键问题、面临的挑战以及未来的发展方向。

, authors=王亚萍, 包文泉, 白玉娥^*, authorsList=王亚萍, 包文泉, 白玉娥, authorCompany=null, correspAuthors=白玉娥, authorNote=null, correspAuthorsNote=, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=EekX7o/yflqX5v2wQXyg/g==, magXml=2kmOxc2DcyAdtFbdpaEthw==, pdfUrl=null, pdf=jgOrZisUaDwUnUkA/rsxSA==, pdfFileSize=611452, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=lD6TI4ylGSlk9Q3mL/IXtA==, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=Tmin1MsxhA6tirOZx9bJWg==, mapNumber=null, fund=null)}, authors=[Author(id=1321791793352524562, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, orderNo=0, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1321791793675485972, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, authorId=1321791793352524562, language=EN, stringName=Yaping Wang, firstName=Yaping, middleName=null, lastName=Wang, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=null, address=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1321791793822286613, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, authorId=1321791793352524562, language=CN, stringName=王亚萍, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=null, address=内蒙古农业大学林学院, 呼和浩特 010019, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1321791793012785934, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, xref=null, ext=[AuthorCompanyExt(id=1321791793033757455, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019), AuthorCompanyExt(id=1321791793050534672, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=内蒙古农业大学林学院, 呼和浩特 010019)])]), Author(id=1321791794103304983, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, orderNo=1, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1321791795550339865, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, authorId=1321791794103304983, language=EN, stringName=Wenquan Bao, firstName=Wenquan, middleName=null, lastName=Bao, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=null, address=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1321791795646808858, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, authorId=1321791794103304983, language=CN, stringName=包文泉, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=null, address=内蒙古农业大学林学院, 呼和浩特 010019, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1321791793012785934, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, xref=null, ext=[AuthorCompanyExt(id=1321791793033757455, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019), AuthorCompanyExt(id=1321791793050534672, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=内蒙古农业大学林学院, 呼和浩特 010019)])]), Author(id=1321791795722306332, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, orderNo=2, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=baiyue@imau.edu.cn, emailSecond=null, emailThird=null, correspondingAuthor=1, authorType=1, ext={EN=AuthorExt(id=1321791795810386718, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, authorId=1321791795722306332, language=EN, stringName=Yu’e Bai, firstName=Yu’e, middleName=null, lastName=Bai, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=^*, address=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1321791795890078495, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, authorId=1321791795722306332, language=CN, stringName=白玉娥, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=^*, address=内蒙古农业大学林学院, 呼和浩特 010019, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1321791793012785934, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, xref=null, ext=[AuthorCompanyExt(id=1321791793033757455, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019), AuthorCompanyExt(id=1321791793050534672, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=内蒙古农业大学林学院, 呼和浩特 010019)])])], keywords=[Keyword(id=1321791796032684832, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, orderNo=1, keyword=plant growth and development), Keyword(id=1321791796204651298, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, orderNo=2, keyword=stress response), Keyword(id=1321791796309508899, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, orderNo=3, keyword=single-cell RNA sequencing (scRNA-seq)), Keyword(id=1321791796481475364, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, orderNo=4, keyword=10× Genomics), Keyword(id=1321791796615693093, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, orderNo=5, keyword=cell type), Keyword(id=1321791796699579174, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, orderNo=1, keyword=植物生长发育), Keyword(id=1321791796766688039, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, orderNo=2, keyword=胁迫响应), Keyword(id=1321791796833796904, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, orderNo=3, keyword=单细胞转录组测序), Keyword(id=1321791796909294377, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, orderNo=4, keyword=10× Genomics), Keyword(id=1321791796988986154, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, orderNo=5, keyword=细胞类型)], refs=[Reference(id=1321791798037562163, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=9, issue=null, pageStart=uhab055, pageEnd=null, url=null, language=null, rfNumber=[1], rfOrder=0, authorNames=Bai YB, Liu H, Lyu HM, Su LY, Xiong JS, Cheng ZM, journalName=Hortic Res, refType=null, unstructuredReference=Bai YB, Liu H, Lyu HM, Su LY, Xiong JS, Cheng ZM (2022). Development of a single-cell atlas for woodland strawberry (Fragaria vesca) leaves during early Botrytis cinerea infection using single-cell RNA-seq. Hortic Res 9, uhab055., articleTitle=Development of a single-cell atlas for woodland strawberry (Fragaria vesca) leaves during early Botrytis cinerea infection using single-cell RNA-seq, refAbstract=null), Reference(id=1321791798285026100, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=33, issue=null, pageStart=531, pageEnd=547, url=null, language=null, rfNumber=[2], rfOrder=1, authorNames=Bezrutczyk M, Zöllner NR, Kruse CPS, Hartwig T, Lautwein T, Köhrer K, Frommer WB, Kim JY, journalName=Plant Cell, refType=null, unstructuredReference=Bezrutczyk M, Zöllner NR, Kruse CPS, Hartwig T, Lautwein T, Köhrer K, Frommer WB, Kim JY (2021). Evidence for phloem loading via the abaxial bundle sheath cells in maize leaves. Plant Cell 33, 531-547., articleTitle=Evidence for phloem loading via the abaxial bundle sheath cells in maize leaves, refAbstract=null), Reference(id=1321791798347940661, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=null, issue=null, pageStart=35, pageEnd=59, url=null, language=null, rfNumber=[3], rfOrder=2, authorNames=Cai PF, journalName=Study on Immune Features of Cytokine Storm in COVID-19 Patients by Single-Cell Transcriptomics and Bioinformatics. PhD dissertation, refType=null, unstructuredReference=Cai PF (2022). Study on Immune Features of Cytokine Storm in COVID-19 Patients by Single-Cell Transcriptomics and Bioinformatics. PhD dissertation. Hefei: University of Science and Technology of China. pp. 35-59. (in Chinese), articleTitle=null, refAbstract=null), Reference(id=1321791799576871735, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=null, issue=null, pageStart=35, pageEnd=59, url=null, language=null, rfNumber=[3], rfOrder=3, authorNames=蔡鹏飞, journalName=新冠肺炎患者炎症风暴免疫学特征的单细胞转录组和生物信息学研究. 博士论文, refType=null, unstructuredReference=蔡鹏飞 (2022). 新冠肺炎患者炎症风暴免疫学特征的单细胞转录组和生物信息学研究. 博士论文. 合肥: 中国科学技术大学. pp. 35-59., articleTitle=null, refAbstract=null), Reference(id=1321791799660757816, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=21, issue=null, pageStart=1839, pageEnd=1859, url=null, language=null, rfNumber=[4], rfOrder=4, authorNames=Cao YY, Ma J, Han SB, Hou MW, Wei X, Zhang XR, Zhang ZJ, Sun SL, Ku LX, Tang JH, Dong ZY, Zhu ZD, Wang XM, Zhou XX, Zhang LL, Li XD, Long Y, Wan XY, Duan CX, journalName=Plant Biotechnol J, refType=null, unstructuredReference=Cao YY, Ma J, Han SB, Hou MW, Wei X, Zhang XR, Zhang ZJ, Sun SL, Ku LX, Tang JH, Dong ZY, Zhu ZD, Wang XM, Zhou XX, Zhang LL, Li XD, Long Y, Wan XY, Duan CX (2023). Single-cell RNA sequencing profiles reveal cell type-specific transcriptional regulation networks conditioning fungal invasion in maize roots. Plant Biotechnol J 21, 1839-1859., articleTitle=Single-cell RNA sequencing profiles reveal cell type-specific transcriptional regulation networks conditioning fungal invasion in maize roots, refAbstract=null), Reference(id=1321791799975330617, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=null, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[5], rfOrder=5, authorNames=Cervantes-Pérez SA, Zogli P, Thibivilliers S, Tennant S, Hossain S, Xu HP, Meyer I, Nooka A, Venkata Subramanyam SSM, Ma PC, Yao QM, Naldrett M, Smith B, Bhattacharya S, Kläver J, Libault M, journalName=Res Square, refType=null, unstructuredReference=Cervantes-Pérez SA, Zogli P, Thibivilliers S, Tennant S, Hossain S, Xu HP, Meyer I, Nooka A, Venkata Subramanyam SSM, Ma PC, Yao QM, Naldrett M, Smith B, Bhattacharya S, Kläver J, Libault M (2023). Single-cell resolution transcriptome atlases of soybean root organs reveal new regulatory programs controlling the nodulation process. Res Square https://doi.org/10.21203/rs.3.rs-2833917/v1, articleTitle=Single-cell resolution transcriptome atlases of soybean root organs reveal new regulatory programs controlling the nodulation process, refAbstract=null), Reference(id=1321791800050828090, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=10, issue=null, pageStart=317, pageEnd=null, url=null, language=null, rfNumber=[6], rfOrder=6, authorNames=Chen G, Ning BT, Shi TL, journalName=Front Genet, refType=null, unstructuredReference=Chen G, Ning BT, Shi TL (2019). Single-cell RNA-seq technologies and related computational data analysis. Front Genet 10, 317., articleTitle=Single-cell RNA-seq technologies and related computational data analysis, refAbstract=null), Reference(id=1321791800147297083, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=22, issue=null, pageStart=319, pageEnd=null, url=null, language=null, rfNumber=[7], rfOrder=7, authorNames=Chen Y, Tong SF, Jiang YZ, Ai FD, Feng YL, Zhang JL, Gong J, Qin JJ, Zhang YY, Zhu YY, Liu JQ, Ma T, journalName=Genome Biol, refType=null, unstructuredReference=Chen Y, Tong SF, Jiang YZ, Ai FD, Feng YL, Zhang JL, Gong J, Qin JJ, Zhang YY, Zhu YY, Liu JQ, Ma T (2021). Transcriptional landscape of highly lignified poplar stems at single-cell resolution. Genome Biol 22, 319., articleTitle=Transcriptional landscape of highly lignified poplar stems at single-cell resolution, refAbstract=null), Reference(id=1321791800453481276, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2024, volume=81, issue=null, pageStart=56, pageEnd=null, url=null, language=null, rfNumber=[8], rfOrder=8, authorNames=Chen ZJ, Ye LQ, Zhu MY, Xia C, Fan JF, Chen HB, Li ZJ, Mou S, journalName=Cell Mol Life Sci, refType=null, unstructuredReference=Chen ZJ, Ye LQ, Zhu MY, Xia C, Fan JF, Chen HB, Li ZJ, Mou S (2024). Single cell multi-omics of fibrotic kidney reveal epigenetic regulation of antioxidation and apoptosis within proximal tubule. Cell Mol Life Sci 81, 56., articleTitle=Single cell multi-omics of fibrotic kidney reveal epigenetic regulation of antioxidation and apoptosis within proximal tubule, refAbstract=null), Reference(id=1321791800533173053, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=10, issue=null, pageStart=uhad122, pageEnd=null, url=null, language=null, rfNumber=[9], rfOrder=9, authorNames=Cheng ZC, Mu CH, Li XY, Cheng WL, Cai MM, Wu CY, Jiang JT, Fang H, Bai YC, Zheng HF, Geng RM, Xu JL, Xie YL, Dou YP, Li J, Mu SH, Gao J, journalName=Hortic Res, refType=null, unstructuredReference=Cheng ZC, Mu CH, Li XY, Cheng WL, Cai MM, Wu CY, Jiang JT, Fang H, Bai YC, Zheng HF, Geng RM, Xu JL, Xie YL, Dou YP, Li J, Mu SH, Gao J (2023). Single-cell transcriptome atlas reveals spatiotemporal developmental trajectories in the basal roots of moso bamboo (Phyllostachys edulis). Hortic Res 10, uhad122., articleTitle=Single-cell transcriptome atlas reveals spatiotemporal developmental trajectories in the basal roots of moso bamboo (Phyllostachys edulis), refAbstract=null), Reference(id=1321791800877105982, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2020, volume=11, issue=null, pageStart=596150, pageEnd=null, url=null, language=null, rfNumber=[10], rfOrder=10, authorNames=Coate JE, Farmer AD, Schiefelbein JW, Doyle JJ, journalName=Front Genet, refType=null, unstructuredReference=Coate JE, Farmer AD, Schiefelbein JW, Doyle JJ (2020). Expression partitioning of duplicate genes at single cell resolution in Arabidopsis roots. Front Genet 11, 596150., articleTitle=Expression partitioning of duplicate genes at single cell resolution in Arabidopsis roots, refAbstract=null), Reference(id=1321791800965186367, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=4, issue=null, pageStart=962, pageEnd=null, url=null, language=null, rfNumber=[11], rfOrder=11, authorNames=Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, Sinha N, Vogel JP, O’Malley RC, Visel A, Dickel DE, journalName=Commun Biol, refType=null, unstructuredReference=Cole B, Bergmann D, Blaby-Haas CE, Blaby IK, Bouchard KE, Brady SM, Ciobanu D, Coleman-Derr D, Leiboff S, Mortimer JC, Nobori T, Rhee SY, Schmutz J, Simmons BA, Singh AK, Sinha N, Vogel JP, O’Malley RC, Visel A, Dickel DE (2021). Plant single-cell solutions for energy and the environment. Commun Biol 4, 962., articleTitle=Plant single-cell solutions for energy and the environment, refAbstract=null), Reference(id=1321791801292342080, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=48, issue=null, pageStart=840, pageEnd=852, url=null, language=null, rfNumber=[12], rfOrder=12, authorNames=Denyer T, Ma XL, Klesen S, Scacchi E, Nieselt K, Timmermans MCP, journalName=Dev Cell, refType=null, unstructuredReference=Denyer T, Ma XL, Klesen S, Scacchi E, Nieselt K, Timmermans MCP (2019). Spatiotemporal developmental trajectories in the Arabidopsis root revealed using high- throughput single-cell RNA sequencing. Dev Cell 48, 840-852., articleTitle=Spatiotemporal developmental trajectories in the Arabidopsis root revealed using high- throughput single-cell RNA sequencing, refAbstract=null), Reference(id=1321791801640469313, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=4, issue=null, pageStart=100554, pageEnd=null, url=null, language=null, rfNumber=[13], rfOrder=13, authorNames=Ding YH, Gao W, Qin Y, Li XP, Zhang ZN, Lai WJ, Yang Y, Guo K, Li P, Zhou SH, Hu HY, journalName=Plant Commun, refType=null, unstructuredReference=Ding YH, Gao W, Qin Y, Li XP, Zhang ZN, Lai WJ, Yang Y, Guo K, Li P, Zhou SH, Hu HY (2023). Single-cell RNA landscape of the special fiber initiation process in Bombax ceiba. Plant Commun 4, 100554., articleTitle=Single-cell RNA landscape of the special fiber initiation process in Bombax ceiba, refAbstract=null), Reference(id=1321791801728549698, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=12, issue=null, pageStart=3334, pageEnd=null, url=null, language=null, rfNumber=[14], rfOrder=14, authorNames=Dorrity MW, Alexandre CM, Hamm MO, Vigil AL, Fields S, Queitsch C, Cuperus JT, journalName=Nat Commun, refType=null, unstructuredReference=Dorrity MW, Alexandre CM, Hamm MO, Vigil AL, Fields S, Queitsch C, Cuperus JT (2021). The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution. Nat Commun 12, 3334., articleTitle=The regulatory landscape of Arabidopsis thaliana roots at single-cell resolution, refAbstract=null), Reference(id=1321791802072482627, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=16, issue=null, pageStart=809, pageEnd=828, url=null, language=null, rfNumber=[15], rfOrder=15, authorNames=Du J, Wang YC, Chen WF, Xu ML, Zhou RH, Shou HX, Chen J, journalName=Mol Plant, refType=null, unstructuredReference=Du J, Wang YC, Chen WF, Xu ML, Zhou RH, Shou HX, Chen J (2023). High-resolution anatomical and spatial transcriptome analyses reveal two types of meristematic cell pools within the secondary vascular tissue of poplar stem. Mol Plant 16, 809-828., articleTitle=High-resolution anatomical and spatial transcriptome analyses reveal two types of meristematic cell pools within the secondary vascular tissue of poplar stem, refAbstract=null), Reference(id=1321791802160563012, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2016, volume=165, issue=null, pageStart=1721, pageEnd=1733, url=null, language=null, rfNumber=[16], rfOrder=16, authorNames=Efroni I, Mello A, Nawy T, Ip PL, Rahni R, DelRose N, Powers A, Satija R, Birnbaum KD, journalName=Cell, refType=null, unstructuredReference=Efroni I, Mello A, Nawy T, Ip PL, Rahni R, DelRose N, Powers A, Satija R, Birnbaum KD (2016). Root regeneration triggers an embryo-like sequence guided by hormonal interactions. Cell 165, 1721-1733., articleTitle=Root regeneration triggers an embryo-like sequence guided by hormonal interactions, refAbstract=null), Reference(id=1321791802479330117, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=33, issue=null, pageStart=2197, pageEnd=2220, url=null, language=null, rfNumber=[17], rfOrder=17, authorNames=Gala HP, Lanctot A, Jean-Baptiste K, Guiziou S, Chu JC, Zemke JE, George W, Queitsch C, Cuperus JT, Nemhauser JL, journalName=Plant Cell, refType=null, unstructuredReference=Gala HP, Lanctot A, Jean-Baptiste K, Guiziou S, Chu JC, Zemke JE, George W, Queitsch C, Cuperus JT, Nemhauser JL (2021). A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana. Plant Cell 33, 2197-2220., articleTitle=A single-cell view of the transcriptome during lateral root initiation in Arabidopsis thaliana, refAbstract=null), Reference(id=1321791802596770630, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=null, issue=null, pageStart=17, pageEnd=61, url=null, language=null, rfNumber=[18], rfOrder=18, authorNames=Guo XL, journalName=Bulk RNA-Seq of Leafy Head and Single-Cell Transcriptome Analysis of Leaf in Brassica rapa. PhD dissertation, refType=null, unstructuredReference=Guo XL (2021). Bulk RNA-Seq of Leafy Head and Single-Cell Transcriptome Analysis of Leaf in Brassica rapa. PhD dissertation. Beijing: Chinese Academy of Agricultural Sciences. pp. 17-61. (in Chinese), articleTitle=null, refAbstract=null), Reference(id=1321791802898760519, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=null, issue=null, pageStart=17, pageEnd=null, url=null, language=null, rfNumber=[18], rfOrder=19, authorNames=郭新磊, journalName=大白菜叶球转录组及叶片单细胞转录组研究. 博士论文, refType=null, unstructuredReference=郭新磊 (2021). 大白菜叶球转录组及叶片单细胞转录组研究. 博士论文. 北京: 中国农业科学院. pp. 17-61., articleTitle=null, refAbstract=null), Reference(id=1321791802965869384, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=4, issue=null, pageStart=1149, pageEnd=null, url=null, language=null, rfNumber=[19], rfOrder=20, authorNames=Hou ZM, Liu YH, Zhang M, Zhao LH, Jin XY, Liu LP, Su ZX, Cai HY, Qin Y, journalName=Commun Biol, refType=null, unstructuredReference=Hou ZM, Liu YH, Zhang M, Zhao LH, Jin XY, Liu LP, Su ZX, Cai HY, Qin Y (2021). High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana. Commun Biol 4, 1149., articleTitle=High-throughput single-cell transcriptomics reveals the female germline differentiation trajectory in Arabidopsis thaliana, refAbstract=null), Reference(id=1321791803058144073, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=31, issue=null, pageStart=993, pageEnd=1011, url=null, language=null, rfNumber=[20], rfOrder=21, authorNames=Jean-Baptiste K, McFaline-Figueroa JL, Alexandre CM, Dorrity MW, Saunders L, Bubb KL, Trapnell C, Fields S, Queitsch C, Cuperus JT, journalName=Plant Cell, refType=null, unstructuredReference=Jean-Baptiste K, McFaline-Figueroa JL, Alexandre CM, Dorrity MW, Saunders L, Bubb KL, Trapnell C, Fields S, Queitsch C, Cuperus JT (2019). Dynamics of gene expression in single root cells of Arabidopsis thaliana. Plant Cell 31, 993-1011., articleTitle=Dynamics of gene expression in single root cells of Arabidopsis thaliana, refAbstract=null), Reference(id=1321791804731671370, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=33, issue=null, pageStart=511, pageEnd=530, url=null, language=null, rfNumber=[21], rfOrder=22, authorNames=Kim JY, Symeonidi E, Pang TY, Denyer T, Weidauer D, Bezrutczyk M, Miras M, Zöllner N, Hartwig T, Wudick MM, Lercher M, Chen LQ, Timmermans MCP, Frommer WB, journalName=Plant Cell, refType=null, unstructuredReference=Kim JY, Symeonidi E, Pang TY, Denyer T, Weidauer D, Bezrutczyk M, Miras M, Zöllner N, Hartwig T, Wudick MM, Lercher M, Chen LQ, Timmermans MCP, Frommer WB (2021). Distinct identities of leaf phloem cells revealed by single cell transcriptomics. Plant Cell 33, 511-530., articleTitle=Distinct identities of leaf phloem cells revealed by single cell transcriptomics, refAbstract=null), Reference(id=1321791804798780235, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2015, volume=161, issue=null, pageStart=1187, pageEnd=1201, url=null, language=null, rfNumber=[22], rfOrder=23, authorNames=Klein AM, Mazutis L, Akartuna I, Tallapragada N, Veres A, Li V, Peshkin L, Weitz DA, Kirschner MW, journalName=Cell, refType=null, unstructuredReference=Klein AM, Mazutis L, Akartuna I, Tallapragada N, Veres A, Li V, Peshkin L, Weitz DA, Kirschner MW (2015). Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells. Cell 161, 1187-1201., articleTitle=Droplet barcoding for single-cell transcriptomics applied to embryonic stem cells, refAbstract=null), Reference(id=1321791804878472012, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=47, issue=null, pageStart=4539, pageEnd=4553, url=null, language=null, rfNumber=[23], rfOrder=24, authorNames=Kubo M, Nishiyama T, Tamada Y, Sano R, Ishikawa M, Murata T, Imai A, Lang D, Demura T, Reski R, Hasebe M, journalName=Nucleic Acids Res, refType=null, unstructuredReference=Kubo M, Nishiyama T, Tamada Y, Sano R, Ishikawa M, Murata T, Imai A, Lang D, Demura T, Reski R, Hasebe M (2019). Single-cell transcriptome analysis of Phy- scomitrella leaf cells during reprogramming using microcapillary manipulation. Nucleic Acids Res 47, 4539-4553., articleTitle=Single-cell transcriptome analysis of Phy- scomitrella leaf cells during reprogramming using microcapillary manipulation, refAbstract=null), Reference(id=1321791804949775181, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023a, volume=58, issue=null, pageStart=694, pageEnd=708, url=null, language=null, rfNumber=[24], rfOrder=25, authorNames=Li CX, Zhang SY, Yan XY, Cheng P, Yu H, journalName=Dev Cell, refType=null, unstructuredReference=Li CX, Zhang SY, Yan XY, Cheng P, Yu H (2023a). Single-nucleus sequencing deciphers developmental trajectories in rice pistils. Dev Cell 58, 694-708., articleTitle=Single-nucleus sequencing deciphers developmental trajectories in rice pistils, refAbstract=null), Reference(id=1321791805046244174, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=63, issue=null, pageStart=1906, pageEnd=1921, url=null, language=null, rfNumber=[25], rfOrder=26, authorNames=Li H, Dai XR, Huang X, Xu MX, Wang Q, Yan XJ, Sederoff RR, Li QZ, journalName=J Integr Plant Biol, refType=null, unstructuredReference=Li H, Dai XR, Huang X, Xu MX, Wang Q, Yan XJ, Sederoff RR, Li QZ (2021). Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus. J Integr Plant Biol 63, 1906-1921., articleTitle=Single-cell RNA sequencing reveals a high-resolution cell atlas of xylem in Populus, refAbstract=null), Reference(id=1321791805159490383, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023b, volume=4, issue=null, pageStart=100665, pageEnd=null, url=null, language=null, rfNumber=[26], rfOrder=27, authorNames=Li RH, Wang ZF, Wang JW, Li LG, journalName=Plant Commun, refType=null, unstructuredReference=Li RH, Wang ZF, Wang JW, Li LG (2023b). Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees. Plant Commun 4, 100665., articleTitle=Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees, refAbstract=null), Reference(id=1321791805222404944, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=10, issue=null, pageStart=1589, pageEnd=1600, url=null, language=null, rfNumber=[27], rfOrder=28, authorNames=Li XH, Zhang XB, Gao S, Cui FQ, Chen WW, Fan LN, Qi YW, journalName=Crop J, refType=null, unstructuredReference=Li XH, Zhang XB, Gao S, Cui FQ, Chen WW, Fan LN, Qi YW (2022). Single-cell RNA sequencing reveals the landscape of maize root tips and assists in identification of cell type-specific nitrate-response genes. Crop J 10, 1589-1600., articleTitle=Single-cell RNA sequencing reveals the landscape of maize root tips and assists in identification of cell type-specific nitrate-response genes, refAbstract=null), Reference(id=1321791805293708113, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=37, issue=null, pageStart=60, pageEnd=66, url=null, language=null, rfNumber=[28], rfOrder=29, authorNames=Li Y, Sun C, journalName=Biotechnol Bull, refType=null, unstructuredReference=Li Y, Sun C (2021). Research progress in single-cell RNA- Seq of plant. Biotechnol Bull 37, 60-66. (in Chinese), articleTitle=Research progress in single-cell RNA- Seq of plant, refAbstract=null), Reference(id=1321791805469868882, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=37, issue=null, pageStart=60, pageEnd=66, url=null, language=null, rfNumber=[28], rfOrder=30, authorNames=李益, 孙超, journalName=生物技术通报, refType=null, unstructuredReference=李益, 孙超 (2021). 植物单细胞转录组测序研究进展. 生物技术通报 37, 60-66., articleTitle=植物单细胞转录组测序研究进展, refAbstract=null), Reference(id=1321791805532783443, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=46, issue=null, pageStart=2222, pageEnd=2237, url=null, language=null, rfNumber=[29], rfOrder=31, authorNames=Liang XY, Ma Z, Ke YH, Wang JL, Wang LF, Qin B, Tang CR, Liu MY, Xian XM, Yang Y, Wang M, Zhang Y, journalName=Plant Cell Environ, refType=null, unstructuredReference=Liang XY, Ma Z, Ke YH, Wang JL, Wang LF, Qin B, Tang CR, Liu MY, Xian XM, Yang Y, Wang M, Zhang Y (2023). Single-cell transcriptomic analyses reveal cellular and molecular patterns of rubber tree response to early powdery mildew infection. Plant Cell Environ 46, 2222-2237., articleTitle=Single-cell transcriptomic analyses reveal cellular and molecular patterns of rubber tree response to early powdery mildew infection, refAbstract=null), Reference(id=1321791805604086612, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=null, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[30], rfOrder=32, authorNames=Liu GY, Li J, Li JM, Chen ZY, Yuan PS, Chen RY, Yin RL, Liao ZT, Li XY, Gu Y, Sun HX, Xia KK, journalName=bioRxiv, refType=null, unstructuredReference=Liu GY, Li J, Li JM, Chen ZY, Yuan PS, Chen RY, Yin RL, Liao ZT, Li XY, Gu Y, Sun HX, Xia KK (2022). Single-cell transcriptome reveals the redifferentiation trajectories of the early stage of de novo shoot regeneration in Arabidopsis thaliana. bioRxiv https://doi.org/10.1101/2022.01.01.474510., articleTitle=Single-cell transcriptome reveals the redifferentiation trajectories of the early stage of de novo shoot regeneration in Arabidopsis thaliana, refAbstract=null), Reference(id=1321791805679584085, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021a, volume=19, issue=null, pageStart=2261, pageEnd=2276, url=null, language=null, rfNumber=[31], rfOrder=33, authorNames=Liu H, Hu DX, Du PX, Wang LP, Liang XQ, Li HF, Lu Q, Li SX, Liu HY, Chen XP, Varshney RK, Hong YB, journalName=Plant Biotechnol J, refType=null, unstructuredReference=Liu H, Hu DX, Du PX, Wang LP, Liang XQ, Li HF, Lu Q, Li SX, Liu HY, Chen XP, Varshney RK, Hong YB (2021a). Single-cell RNA-seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut (Arachis hypogaea L.). Plant Biotechnol J 19, 2261-2276., articleTitle=Single-cell RNA-seq describes the transcriptome landscape and identifies critical transcription factors in the leaf blade of the allotetraploid peanut (Arachis hypogaea L.), refAbstract=null), Reference(id=1321791805759275862, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021b, volume=14, issue=null, pageStart=384, pageEnd=394, url=null, language=null, rfNumber=[32], rfOrder=34, authorNames=Liu Q, Liang Z, Feng D, Jiang SJ, Wang YF, Du ZY, Li RX, Hu GH, Zhang PX, Ma YF, Lohmann JU, Gu XF, journalName=Mol Plant, refType=null, unstructuredReference=Liu Q, Liang Z, Feng D, Jiang SJ, Wang YF, Du ZY, Li RX, Hu GH, Zhang PX, Ma YF, Lohmann JU, Gu XF (2021b). Transcriptional landscape of rice roots at the single-cell resolution. Mol Plant 14, 384-394., articleTitle=Transcriptional landscape of rice roots at the single-cell resolution, refAbstract=null), Reference(id=1321791805834773335, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=9, issue=null, pageStart=515, pageEnd=524, url=null, language=null, rfNumber=[33], rfOrder=35, authorNames=Liu ZJ, Kong XY, Long YP, Liu SR, Zhang H, Jia JB, Cui WH, Zhang ZM, Song XW, Qiu LJ, Zhai JX, Yan Z, journalName=Nat Plants, refType=null, unstructuredReference=Liu ZJ, Kong XY, Long YP, Liu SR, Zhang H, Jia JB, Cui WH, Zhang ZM, Song XW, Qiu LJ, Zhai JX, Yan Z (2023). Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation. Nat Plants 9, 515-524., articleTitle=Integrated single-nucleus and spatial transcriptomics captures transitional states in soybean nodule maturation, refAbstract=null), Reference(id=1321791805914465112, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2015, volume=161, issue=null, pageStart=1202, pageEnd=1214, url=null, language=null, rfNumber=[34], rfOrder=36, authorNames=Macosko EZ, Basu A, Satija R, Nemesh J, Shekhar K, Goldman M, Tirosh I, Bialas AR, Kamitaki N, Martersteck EM, Trombetta JJ, Weitz DA, Sanes JR, Shalek AK, Regev A, McCarroll SA, journalName=Cell, refType=null, unstructuredReference=Macosko EZ, Basu A, Satija R, Nemesh J, Shekhar K, Goldman M, Tirosh I, Bialas AR, Kamitaki N, Martersteck EM, Trombetta JJ, Weitz DA, Sanes JR, Shalek AK, Regev A, McCarroll SA (2015). Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets. Cell 161, 1202-1214., articleTitle=Highly parallel genome-wide expression profiling of individual cells using nanoliter droplets, refAbstract=null), Reference(id=1321791806006739801, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2017, volume=52, issue=null, pageStart=788, pageEnd=796, url=null, language=null, rfNumber=[35], rfOrder=37, authorNames=Niu YL, Bai SL, Wang QY, Liu LY, journalName=Chin Bull Bot, refType=null, unstructuredReference=Niu YL, Bai SL, Wang QY, Liu LY (2017). Applications of single-cell technologies in guard cells. Chin Bull Bot 52, 788-796. (in Chinese), articleTitle=Applications of single-cell technologies in guard cells, refAbstract=null), Reference(id=1321791806103208794, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2017, volume=52, issue=null, pageStart=788, pageEnd=796, url=null, language=null, rfNumber=[35], rfOrder=38, authorNames=牛艳丽, 柏胜龙, 王麒云, 刘凌云, journalName=植物学报, refType=null, unstructuredReference=牛艳丽, 柏胜龙, 王麒云, 刘凌云 (2017). 单细胞组学技术及其在植物保卫细胞研究中的应用. 植物学报 52, 788-796., articleTitle=单细胞组学技术及其在植物保卫细胞研究中的应用, refAbstract=null), Reference(id=1321791806208066395, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=9, issue=null, pageStart=eadg6983, pageEnd=null, url=null, language=null, rfNumber=[36], rfOrder=39, authorNames=Ogura N, Sasagawa Y, Ito T, Tameshige T, Kawai S, Sano M, Doll Y, Iwase A, Kawamura A, Suzuki T, Nikaido I, Sugimoto K, Ikeuchi M, journalName=Sci Adv, refType=null, unstructuredReference=Ogura N, Sasagawa Y, Ito T, Tameshige T, Kawai S, Sano M, Doll Y, Iwase A, Kawamura A, Suzuki T, Nikaido I, Sugimoto K, Ikeuchi M (2023). WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus. Sci Adv 9, eadg6983., articleTitle=WUSCHEL-RELATED HOMEOBOX 13 suppresses de novo shoot regeneration via cell fate control of pluripotent callus, refAbstract=null), Reference(id=1321791806279369564, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=375, issue=null, pageStart=eabf4368, pageEnd=null, url=null, language=null, rfNumber=[37], rfOrder=40, authorNames=Omary M, Gil-Yarom N, Yahav C, Steiner E, Hendelman A, Efroni I, journalName=Science, refType=null, unstructuredReference=Omary M, Gil-Yarom N, Yahav C, Steiner E, Hendelman A, Efroni I (2022). A conserved superlocus regulates above- and belowground root initiation. Science 375, eabf4368., articleTitle=A conserved superlocus regulates above- and belowground root initiation, refAbstract=null), Reference(id=1321791806333895517, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2017, volume=14, issue=null, pageStart=309, pageEnd=315, url=null, language=null, rfNumber=[38], rfOrder=41, authorNames=Qiu XJ, Hill A, Packer J, Lin DJ, Ma YA, Trapnell C, journalName=Nat Methods, refType=null, unstructuredReference=Qiu XJ, Hill A, Packer J, Lin DJ, Ma YA, Trapnell C (2017). Single-cell mRNA quantification and differential analysis with Census. Nat Methods 14, 309-315., articleTitle=Single-cell mRNA quantification and differential analysis with Census, refAbstract=null), Reference(id=1321791806401004382, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=24, issue=null, pageStart=303, pageEnd=310, url=null, language=null, rfNumber=[39], rfOrder=42, authorNames=Rhee SY, Birnbaum KD, Ehrhardt DW, journalName=Trends Plant Sci, refType=null, unstructuredReference=Rhee SY, Birnbaum KD, Ehrhardt DW (2019). Towards building a plant cell atlas. Trends Plant Sci 24, 303-310., articleTitle=Towards building a plant cell atlas, refAbstract=null), Reference(id=1321791806459724639, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=179, issue=null, pageStart=1444, pageEnd=1456, url=null, language=null, rfNumber=[40], rfOrder=43, authorNames=Ryu KH, Huang L, Kang HM, Schiefelbein J, journalName=Plant Physiol, refType=null, unstructuredReference=Ryu KH, Huang L, Kang HM, Schiefelbein J (2019). Single-cell RNA sequencing resolves molecular relationships among individual plant cells. Plant Physiol 179, 1444-1456., articleTitle=Single-cell RNA sequencing resolves molecular relationships among individual plant cells, refAbstract=null), Reference(id=1321791806522639200, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=57, issue=null, pageStart=543, pageEnd=560, url=null, language=null, rfNumber=[41], rfOrder=44, authorNames=Shahan R, Hsu CW, Nolan TM, Cole BJ, Taylor IW, Greenstreet L, Zhang S, Afanassiev A, Vlot AHC, Schiebinger G, Benfey PN, Ohler U, journalName=Dev Cell, refType=null, unstructuredReference=Shahan R, Hsu CW, Nolan TM, Cole BJ, Taylor IW, Greenstreet L, Zhang S, Afanassiev A, Vlot AHC, Schiebinger G, Benfey PN, Ohler U (2022). A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants. Dev Cell 57, 543-560., articleTitle=A single-cell Arabidopsis root atlas reveals developmental trajectories in wild-type and cell identity mutants, refAbstract=null), Reference(id=1321791806577165153, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=14, issue=null, pageStart=115, pageEnd=126, url=null, language=null, rfNumber=[42], rfOrder=45, authorNames=Shaw R, Tian X, Xu J, journalName=Mol Plant, refType=null, unstructuredReference=Shaw R, Tian X, Xu J (2021). Single-cell transcriptome analysis in plants: advances and challenges. Mol Plant 14, 115-126., articleTitle=Single-cell transcriptome analysis in plants: advances and challenges, refAbstract=null), Reference(id=1321791806652662626, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=27, issue=null, pageStart=2241, pageEnd=2247, url=null, language=null, rfNumber=[43], rfOrder=46, authorNames=Shulse CN, Cole BJ, Ciobanu D, Lin JY, Yoshinaga Y, Gouran M, Turco GM, Zhu YW, O’Malley RC, Brady SM, Dickel DE, journalName=Cell Rep, refType=null, unstructuredReference=Shulse CN, Cole BJ, Ciobanu D, Lin JY, Yoshinaga Y, Gouran M, Turco GM, Zhu YW, O’Malley RC, Brady SM, Dickel DE (2019). High-throughput single-cell transcriptome profiling of plant cell types. Cell Rep 27, 2241-2247., articleTitle=High-throughput single-cell transcriptome profiling of plant cell types, refAbstract=null), Reference(id=1321791806715577187, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2020, volume=21, issue=null, pageStart=178, pageEnd=null, url=null, language=null, rfNumber=[44], rfOrder=47, authorNames=Song QX, Ando A, Jiang N, Ikeda Y, Chen ZJ, journalName=Genome Biol, refType=null, unstructuredReference=Song QX, Ando A, Jiang N, Ikeda Y, Chen ZJ (2020). Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes. Genome Biol 21, 178., articleTitle=Single-cell RNA-seq analysis reveals ploidy-dependent and cell-specific transcriptome changes in Arabidopsis female gametophytes, refAbstract=null), Reference(id=1321791806770103140, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=null, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[45], rfOrder=48, authorNames=Song XH, Guo PR, Wang ML, Chen LC, Zhang JH, Xu MY, Liu NX, Liu M, Fang L, Xu X, Gu Y, Xia KK, Li BS, journalName=bioRxiv, refType=null, unstructuredReference=Song XH, Guo PR, Wang ML, Chen LC, Zhang JH, Xu MY, Liu NX, Liu M, Fang L, Xu X, Gu Y, Xia KK, Li BS (2023). Spatial transcriptomic atlas of shoot organogenesis in tomato callus. bioRxiv https://doi.org/10.1101/2023.02.24.529793., articleTitle=Spatial transcriptomic atlas of shoot organogenesis in tomato callus, refAbstract=null), Reference(id=1321791806837212005, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023a, volume=65, issue=null, pageStart=1536, pageEnd=1552, url=null, language=null, rfNumber=[46], rfOrder=49, authorNames=Sun BC, Wang Y, Yang Q, Gao H, Niu HY, Li YS, Ma Q, Huan Q, Qian WF, Ren B, journalName=J Integr Plant Biol, refType=null, unstructuredReference=Sun BC, Wang Y, Yang Q, Gao H, Niu HY, Li YS, Ma Q, Huan Q, Qian WF, Ren B (2023a). A high-resolution transcriptomic atlas depicting nitrogen fixation and nodule development in soybean. J Integr Plant Biol 65, 1536-1552., articleTitle=A high-resolution transcriptomic atlas depicting nitrogen fixation and nodule development in soybean, refAbstract=null), Reference(id=1321791806904320870, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023b, volume=9, issue=null, pageStart=179, pageEnd=190, url=null, language=null, rfNumber=[47], rfOrder=50, authorNames=Sun SJ, Shen XF, Li Y, Li Y, Wang S, Li RC, Zhang HB, Shen GA, Guo BL, Wei JH, Xu J, St-Pierre B, Chen SL, Sun C, journalName=Nat Plants, refType=null, unstructuredReference=Sun SJ, Shen XF, Li Y, Li Y, Wang S, Li RC, Zhang HB, Shen GA, Guo BL, Wei JH, Xu J, St-Pierre B, Chen SL, Sun C (2023b). Single-cell RNA sequencing provides a high-resolution roadmap for understanding the multicellular compartmentation of specialized metabolism. Nat Plants 9, 179-190., articleTitle=Single-cell RNA sequencing provides a high-resolution roadmap for understanding the multicellular compartmentation of specialized metabolism, refAbstract=null), Reference(id=1321791806975624039, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=23, issue=null, pageStart=262, pageEnd=null, url=null, language=null, rfNumber=[48], rfOrder=51, authorNames=Sun XX, Feng DL, Liu MY, Qin RX, Li Y, Lu Y, Zhang XM, Wang YH, Shen SX, Ma W, Zhao JJ, journalName=Genome Biol, refType=null, unstructuredReference=Sun XX, Feng DL, Liu MY, Qin RX, Li Y, Lu Y, Zhang XM, Wang YH, Shen SX, Ma W, Zhao JJ (2022). Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage. Genome Biol 23, 262., articleTitle=Single-cell transcriptome reveals dominant subgenome expression and transcriptional response to heat stress in Chinese cabbage, refAbstract=null), Reference(id=1321791807072093032, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023c, volume=16, issue=null, pageStart=694, pageEnd=708, url=null, language=null, rfNumber=[49], rfOrder=52, authorNames=Sun Y, Han YF, Sheng K, Yang P, Cao YF, Li HZ, Zhu QH, Chen JH, Zhu SJ, Zhao TL, journalName=Mol Plant, refType=null, unstructuredReference=Sun Y, Han YF, Sheng K, Yang P, Cao YF, Li HZ, Zhu QH, Chen JH, Zhu SJ, Zhao TL (2023c). Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of pigment glands in Gossypium bickii. Mol Plant 16, 694-708., articleTitle=Single-cell transcriptomic analysis reveals the developmental trajectory and transcriptional regulatory networks of pigment glands in Gossypium bickii, refAbstract=null), Reference(id=1321791807130813289, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2009, volume=6, issue=null, pageStart=377, pageEnd=382, url=null, language=null, rfNumber=[50], rfOrder=53, authorNames=Tang FC, Barbacioru C, Wang YZ, Nordman E, Lee C, Xu NL, Wang XH, Bodeau J, Tuch BB, Siddiqui A, Lao KQ, Surani MA, journalName=Nat Methods, refType=null, unstructuredReference=Tang FC, Barbacioru C, Wang YZ, Nordman E, Lee C, Xu NL, Wang XH, Bodeau J, Tuch BB, Siddiqui A, Lao KQ, Surani MA (2009). mRNA-Seq whole-transcriptome analysis of a single cell. Nat Methods 6, 377-382., articleTitle=mRNA-Seq whole-transcriptome analysis of a single cell, refAbstract=null), Reference(id=1321791807206310762, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=13, issue=null, pageStart=374, pageEnd=null, url=null, language=null, rfNumber=[51], rfOrder=54, authorNames=Tao ST, Liu P, Shi YN, Feng YL, Gao JJ, Chen LF, Zhang AC, Cheng XJ, Wei HR, Zhang T, Zhang WL, journalName=Genes, refType=null, unstructuredReference=Tao ST, Liu P, Shi YN, Feng YL, Gao JJ, Chen LF, Zhang AC, Cheng XJ, Wei HR, Zhang T, Zhang WL (2022). Single-cell transcriptome and network analyses unveil key transcription factors regulating mesophyll cell development in maize. Genes 13, 374., articleTitle=Single-cell transcriptome and network analyses unveil key transcription factors regulating mesophyll cell development in maize, refAbstract=null), Reference(id=1321791807286002539, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2020, volume=null, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[52], rfOrder=55, authorNames=Tian CH, Du QW, Xu MX, Du F, Jiao YL, journalName=bioRxiv, refType=null, unstructuredReference=Tian CH, Du QW, Xu MX, Du F, Jiao YL (2020). Single-nucleus RNA-seq resolves spatiotemporal developmental trajectories in the tomato shoot apex. bioRxiv https://doi.org/10.1101/2020.09.20.305029., articleTitle=Single-nucleus RNA-seq resolves spatiotemporal developmental trajectories in the tomato shoot apex, refAbstract=null), Reference(id=1321791807361500012, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2014, volume=32, issue=null, pageStart=381, pageEnd=386, url=null, language=null, rfNumber=[53], rfOrder=56, authorNames=Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li SQ, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL, journalName=Nat Biotechnol, refType=null, unstructuredReference=Trapnell C, Cacchiarelli D, Grimsby J, Pokharel P, Li SQ, Morse M, Lennon NJ, Livak KJ, Mikkelsen TS, Rinn JL (2014). The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells. Nat Biotechnol 32, 381-386., articleTitle=The dynamics and regulators of cell fate decisions are revealed by pseudotemporal ordering of single cells, refAbstract=null), Reference(id=1321791807416025965, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=24, issue=null, pageStart=3, pageEnd=null, url=null, language=null, rfNumber=[54], rfOrder=57, authorNames=Tung CC, Kuo SC, Yang CL, Yu JH, Huang CE, Liou PC, Sun YH, Shuai P, Su JC, Ku C, Lin YCJ, journalName=Genome Biol, refType=null, unstructuredReference=Tung CC, Kuo SC, Yang CL, Yu JH, Huang CE, Liou PC, Sun YH, Shuai P, Su JC, Ku C, Lin YCJ (2023). Single-cell transcriptomics unveils xylem cell development and evolution. Genome Biol 24, 3., articleTitle=Single-cell transcriptomics unveils xylem cell development and evolution, refAbstract=null), Reference(id=1321791807483134830, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019, volume=28, issue=null, pageStart=342, pageEnd=351, url=null, language=null, rfNumber=[55], rfOrder=58, authorNames=Turco GM, Rodriguez-Medina J, Siebert S, Han DN, Valderrama-Gómez MÁ, Vahldick H, Shulse CN, Cole BJ, Juliano CE, Dickel DE, Savageau MA, Brady SM, journalName=Cell Rep, refType=null, unstructuredReference=Turco GM, Rodriguez-Medina J, Siebert S, Han DN, Valderrama-Gómez MÁ, Vahldick H, Shulse CN, Cole BJ, Juliano CE, Dickel DE, Savageau MA, Brady SM (2019). Molecular mechanisms driving switch behavior in xylem cell differentiation. Cell Rep 28, 342-351., articleTitle=Molecular mechanisms driving switch behavior in xylem cell differentiation, refAbstract=null), Reference(id=1321791809127301999, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=24, issue=null, pageStart=49, pageEnd=null, url=null, language=null, rfNumber=[56], rfOrder=59, authorNames=Wang DH, Hu X, Ye HZ, Wang Y, Yang Q, Liang XD, Wang ZL, Zhou YF, Wen MM, Yuan XY, Zheng XM, Ye W, Guo BY, Yusuyin M, Russinova E, Zhou Y, Wang K, journalName=Genome Biol, refType=null, unstructuredReference=Wang DH, Hu X, Ye HZ, Wang Y, Yang Q, Liang XD, Wang ZL, Zhou YF, Wen MM, Yuan XY, Zheng XM, Ye W, Guo BY, Yusuyin M, Russinova E, Zhou Y, Wang K (2023). Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton. Genome Biol 24, 49., articleTitle=Cell-specific clock-controlled gene expression program regulates rhythmic fiber cell growth in cotton, refAbstract=null), Reference(id=1321791809223770992, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021a, volume=48, issue=null, pageStart=1087, pageEnd=1099, url=null, language=null, rfNumber=[57], rfOrder=60, authorNames=Wang JB, Li Y, Wu TW, Miao C, Xie MJ, Ding B, Li M, Bao SG, Chen XQ, Hu ZR, Xie XD, journalName=Funct Plant Biol, refType=null, unstructuredReference=Wang JB, Li Y, Wu TW, Miao C, Xie MJ, Ding B, Li M, Bao SG, Chen XQ, Hu ZR, Xie XD (2021a). Single-cell-type transcriptomic analysis reveals distinct gene expression profiles in wheat guard cells in response to abscisic acid. Funct Plant Biol 48, 1087-1099., articleTitle=Single-cell-type transcriptomic analysis reveals distinct gene expression profiles in wheat guard cells in response to abscisic acid, refAbstract=null), Reference(id=1321791809295074161, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=20, issue=null, pageStart=2089, pageEnd=2106, url=null, language=null, rfNumber=[58], rfOrder=61, authorNames=Wang Q, Wu Y, Peng AQ, Cui JL, Zhao MY, Pan YT, Zhang MT, Tian K, Schwab W, Song CK, journalName=Plant Biotechnol J, refType=null, unstructuredReference=Wang Q, Wu Y, Peng AQ, Cui JL, Zhao MY, Pan YT, Zhang MT, Tian K, Schwab W, Song CK (2022). Single-cell transcriptome atlas reveals developmental trajectories and a novel metabolic pathway of catechin esters in tea leaves. Plant Biotechnol J 20, 2089-2106., articleTitle=Single-cell transcriptome atlas reveals developmental trajectories and a novel metabolic pathway of catechin esters in tea leaves, refAbstract=null), Reference(id=1321791809383154546, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021b, volume=19, issue=null, pageStart=null, pageEnd=253, url=null, language=null, rfNumber=[59], rfOrder=62, authorNames=Wang XL, He Y, Zhang QM, Ren XW, Zhang ZM, journalName=Genom Proteom Bioinf, refType=null, unstructuredReference=Wang XL, He Y, Zhang QM, Ren XW, Zhang ZM (2021b). Direct comparative analyses of 10× Genomics chromium and Smart-Seq2. Genom Proteom Bioinf 19, 253-266., articleTitle=Direct comparative analyses of 10× Genomics chromium and Smart-Seq2, refAbstract=null), Reference(id=1321791809450263411, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021c, volume=48, issue=null, pageStart=881, pageEnd=898, url=null, language=null, rfNumber=[60], rfOrder=63, authorNames=Wang Y, Huan Q, Li K, Qian WF, journalName=J Genet Genomics, refType=null, unstructuredReference=Wang Y, Huan Q, Li K, Qian WF (2021c). Single-cell transcriptome atlas of the leaf and root of rice seedlings. J Genet Genomics 48, 881-898., articleTitle=Single-cell transcriptome atlas of the leaf and root of rice seedlings, refAbstract=null), Reference(id=1321791809525760884, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2020, volume=370, issue=null, pageStart=eaay4970, pageEnd=null, url=null, language=null, rfNumber=[61], rfOrder=64, authorNames=Wendrich JR, Yang BJ, Vandamme N, Verstaen K, Smet W, van de Velde C, Minne M, Wybouw B, Mor E, Arents HE, Nolf J, van Duyse J, van Isterdael G, Maere S, Saeys Y, De Rybel B, journalName=Science, refType=null, unstructuredReference=Wendrich JR, Yang BJ, Vandamme N, Verstaen K, Smet W, van de Velde C, Minne M, Wybouw B, Mor E, Arents HE, Nolf J, van Duyse J, van Isterdael G, Maere S, Saeys Y, De Rybel B (2020). Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions. Science 370, eaay4970., articleTitle=Vascular transcription factors guide plant epidermal responses to limiting phosphate conditions, refAbstract=null), Reference(id=1321791809592869749, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=57, issue=null, pageStart=1299, pageEnd=1310, url=null, language=null, rfNumber=[62], rfOrder=65, authorNames=Xia KK, Sun HX, Li J, Li JM, Zhao Y, Chen LC, Qin C, Chen RY, Chen ZY, Liu GY, Yin RL, Mu BB, Wang XJ, Xu MY, Li XY, Yuan PS, Qiao YX, Hao SJ, Wang J, Xie Q, Xu JS, Liu SP, Li YX, Chen A, Liu LQ, Yin Y, Yang HM, Wang J, Gu Y, Xu X, journalName=Dev Cell, refType=null, unstructuredReference=Xia KK, Sun HX, Li J, Li JM, Zhao Y, Chen LC, Qin C, Chen RY, Chen ZY, Liu GY, Yin RL, Mu BB, Wang XJ, Xu MY, Li XY, Yuan PS, Qiao YX, Hao SJ, Wang J, Xie Q, Xu JS, Liu SP, Li YX, Chen A, Liu LQ, Yin Y, Yang HM, Wang J, Gu Y, Xu X (2022). The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves. Dev Cell 57, 1299-1310., articleTitle=The single-cell stereo-seq reveals region-specific cell subtypes and transcriptome profiling in Arabidopsis leaves, refAbstract=null), Reference(id=1321791809668367222, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=58, issue=null, pageStart=214, pageEnd=232, url=null, language=null, rfNumber=[63], rfOrder=66, authorNames=Xiao YB, Zhang ZX, Wang YZ, Liu H, Chen LT, journalName=Chin Bull Bot, refType=null, unstructuredReference=Xiao YB, Zhang ZX, Wang YZ, Liu H, Chen LT (2023). Research progress of spatiotemporal transcriptomes. Chin Bull Bot 58, 214-232. (in Chinese), articleTitle=Research progress of spatiotemporal transcriptomes, refAbstract=null), Reference(id=1321791809743864695, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=58, issue=null, pageStart=214, pageEnd=232, url=null, language=null, rfNumber=[63], rfOrder=67, authorNames=肖宇彬, 张子旭, 王玉珠, 刘欢, 陈乐天, journalName=植物学报, refType=null, unstructuredReference=肖宇彬, 张子旭, 王玉珠, 刘欢, 陈乐天 (2023). 时空转录组研究进展. 植物学报 58, 214-232., articleTitle=时空转录组研究进展, refAbstract=null), Reference(id=1321791809810973560, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=20, issue=null, pageStart=417, pageEnd=419, url=null, language=null, rfNumber=[64], rfOrder=68, authorNames=Xie JB, Li M, Zeng JY, Li X, Zhang DQ, journalName=Plant Biotechnol J, refType=null, unstructuredReference=Xie JB, Li M, Zeng JY, Li X, Zhang DQ (2022). Single-cell RNA sequencing profiles of stem-differentiating xylem in poplar. Plant Biotechnol J 20, 417-419., articleTitle=Single-cell RNA sequencing profiles of stem-differentiating xylem in poplar, refAbstract=null), Reference(id=1321791809869693817, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=56, issue=null, pageStart=557, pageEnd=568, url=null, language=null, rfNumber=[65], rfOrder=69, authorNames=Xu XS, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu ZF, Wang LY, Fox N, Wang XF, Drenkow J, Luo AD, Char SN, Yang B, Sylvester AW, Gingeras TR, Schmitz RJ, Ware D, Lipka AE, Jackson D, journalName=Dev Cell, refType=null, unstructuredReference=Xu XS, Crow M, Rice BR, Li F, Harris B, Liu L, Demesa-Arevalo E, Lu ZF, Wang LY, Fox N, Wang XF, Drenkow J, Luo AD, Char SN, Yang B, Sylvester AW, Gingeras TR, Schmitz RJ, Ware D, Lipka AE, Jackson D (2021). Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery. Dev Cell 56, 557-568., articleTitle=Single-cell RNA sequencing of developing maize ears facilitates functional analysis and trait candidate gene discovery, refAbstract=null), Reference(id=1321791809924219770, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=28, issue=null, pageStart=1053, pageEnd=1060, url=null, language=null, rfNumber=[66], rfOrder=70, authorNames=Yang M, Tang LY, Zi XY, journalName=Chin J Cancer Biother, refType=null, unstructuredReference=Yang M, Tang LY, Zi XY (2021). Single-cell transcriptome sequencing and tumor precision medicine. Chin J Cancer Biother 28, 1053-1060. (in Chinese), articleTitle=Single-cell transcriptome sequencing and tumor precision medicine, refAbstract=null), Reference(id=1321791810008105851, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=28, issue=null, pageStart=1053, pageEnd=1060, url=null, language=null, rfNumber=[66], rfOrder=71, authorNames=杨梅, 唐乐怡, 訾晓渊, journalName=中国肿瘤生物治疗杂志, refType=null, unstructuredReference=杨梅, 唐乐怡, 訾晓渊 (2021). 单细胞转录组测序和肿瘤精准医疗. 中国肿瘤生物治疗杂志 28, 1053-1060., articleTitle=单细胞转录组测序和肿瘤精准医疗, refAbstract=null), Reference(id=1321791810075214716, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=116, issue=null, pageStart=1571, pageEnd=1581, url=null, language=null, rfNumber=[67], rfOrder=72, authorNames=Yin RL, Xia KK, Xu X, journalName=Plant J, refType=null, unstructuredReference=Yin RL, Xia KK, Xu X (2023). Spatial transcriptomics drives a new era in plant research. Plant J 116, 1571-1581., articleTitle=Spatial transcriptomics drives a new era in plant research, refAbstract=null), Reference(id=1321791810138129277, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=115, issue=null, pageStart=1243, pageEnd=1260, url=null, language=null, rfNumber=[68], rfOrder=73, authorNames=Yu CN, Hou KL, Zhang HS, Liang XS, Chen C, Wang ZJ, Wu QC, Chen GL, He JX, Bai EH, Li XF, Du TR, Wang YF, Wang MS, Feng SG, Wang HZ, Shen CJ, journalName=Plant J, refType=null, unstructuredReference=Yu CN, Hou KL, Zhang HS, Liang XS, Chen C, Wang ZJ, Wu QC, Chen GL, He JX, Bai EH, Li XF, Du TR, Wang YF, Wang MS, Feng SG, Wang HZ, Shen CJ (2023). Integrated mass spectrometry imaging and single-cell transcriptome atlas strategies provide novel insights into taxoid biosynthesis and transport in Taxus mairei stems. Plant J 115, 1243-1260., articleTitle=Integrated mass spectrometry imaging and single-cell transcriptome atlas strategies provide novel insights into taxoid biosynthesis and transport in Taxus mairei stems, refAbstract=null), Reference(id=1321791810209432446, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=7, issue=null, pageStart=1453, pageEnd=1460, url=null, language=null, rfNumber=[69], rfOrder=74, authorNames=Zhai N, Xu L, journalName=Nat Plants, refType=null, unstructuredReference=Zhai N, Xu L (2021). Pluripotency acquisition in the middle cell layer of callus is required for organ regeneration. Nat Plants 7, 1453-1460., articleTitle=Pluripotency acquisition in the middle cell layer of callus is required for organ regeneration, refAbstract=null), Reference(id=1321791810272347007, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=24, issue=null, pageStart=65, pageEnd=null, url=null, language=null, rfNumber=[70], rfOrder=75, authorNames=Zhang LH, He C, Lai YT, Wang YT, Kang L, Liu AK, Lan CX, Su HD, Gao YW, Li ZQ, Yang F, Li Q, Mao HL, Chen DJ, Chen W, Kaufmann K, Yan WH, journalName=Genome Biol, refType=null, unstructuredReference=Zhang LH, He C, Lai YT, Wang YT, Kang L, Liu AK, Lan CX, Su HD, Gao YW, Li ZQ, Yang F, Li Q, Mao HL, Chen DJ, Chen W, Kaufmann K, Yan WH (2023). Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis. Genome Biol 24, 65., articleTitle=Asymmetric gene expression and cell-type-specific regulatory networks in the root of bread wheat revealed by single-cell multiomics analysis, refAbstract=null), Reference(id=1321791810339455872, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=null, issue=null, pageStart=29, pageEnd=60, url=null, language=null, rfNumber=[71], rfOrder=76, authorNames=Zhang ST, journalName=Functional Study of the ERF6-GPAT Regulatory Network Based on Single-Cell Transcriptome During the Early Somatic Embryogenesis of Longan. PhD dissertation, refType=null, unstructuredReference=Zhang ST (2022). Functional Study of the ERF6-GPAT Regulatory Network Based on Single-Cell Transcriptome During the Early Somatic Embryogenesis of Longan. PhD dissertation. Fuzhou: Fujian Agriculture and Forestry University. pp. 29-60. (in Chinese), articleTitle=null, refAbstract=null), Reference(id=1321791810456896385, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2022, volume=null, issue=null, pageStart=29, pageEnd=60, url=null, language=null, rfNumber=[71], rfOrder=77, authorNames=张舒婷, journalName=基于单细胞转录组的ERF6-GPAT调控网络在龙眼体胚发生早期的功能研究. 博士论文, refType=null, unstructuredReference=张舒婷 (2022). 基于单细胞转录组的ERF6-GPAT调控网络在龙眼体胚发生早期的功能研究. 博士论文. 福州: 福建农林大学. pp. 29-60., articleTitle=null, refAbstract=null), Reference(id=1321791810532393858, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2021, volume=12, issue=null, pageStart=2053, pageEnd=null, url=null, language=null, rfNumber=[72], rfOrder=78, authorNames=Zhang TQ, Chen Y, Liu Y, Lin WH, Wang JW, journalName=Nat Commun, refType=null, unstructuredReference=Zhang TQ, Chen Y, Liu Y, Lin WH, Wang JW (2021). Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root. Nat Commun 12, 2053., articleTitle=Single-cell transcriptome atlas and chromatin accessibility landscape reveal differentiation trajectories in the rice root, refAbstract=null), Reference(id=1321791810603697027, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019a, volume=12, issue=null, pageStart=648, pageEnd=660, url=null, language=null, rfNumber=[73], rfOrder=79, authorNames=Zhang TQ, Xu ZG, Shang GD, Wang JW, journalName=Mol Plant, refType=null, unstructuredReference=Zhang TQ, Xu ZG, Shang GD, Wang JW (2019a). A single-cell RNA sequencing profiles the developmental landscape of Arabidopsis root. Mol Plant 12, 648-660., articleTitle=A single-cell RNA sequencing profiles the developmental landscape of Arabidopsis root, refAbstract=null), Reference(id=1321791810691777412, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2019b, volume=73, issue=null, pageStart=130, pageEnd=142, url=null, language=null, rfNumber=[74], rfOrder=80, authorNames=Zhang XN, Li TQ, Liu F, Chen YQ, Yao JC, Li ZY, Huang YY, Wang JB, journalName=Mol Cell, refType=null, unstructuredReference=Zhang XN, Li TQ, Liu F, Chen YQ, Yao JC, Li ZY, Huang YY, Wang JB (2019b). Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems. Mol Cell 73, 130-142., articleTitle=Comparative analysis of droplet-based ultra-high-throughput single-cell RNA-seq systems, refAbstract=null), Reference(id=1321791810758886277, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2017, volume=8, issue=null, pageStart=14049, pageEnd=null, url=null, language=null, rfNumber=[75], rfOrder=81, authorNames=Zheng GXY, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, Ziraldo SB, Wheeler TD, McDermott GP, Zhu JJ, Gregory MT, Shuga J, Montesclaros L, Underwood JG, Masquelier DA, Nishimura SY, Schnall-Levin M, Wyatt PW, Hindson CM, Bharadwaj R, Wong A, Ness KD, Beppu LW, Deeg HJ, McFarland C, Loeb KR, Valente WJ, Ericson NG, Stevens EA, Radich JP, Mikkelsen TS, Hindson BJ, Bielas JH, journalName=Nat Commun, refType=null, unstructuredReference=Zheng GXY, Terry JM, Belgrader P, Ryvkin P, Bent ZW, Wilson R, Ziraldo SB, Wheeler TD, McDermott GP, Zhu JJ, Gregory MT, Shuga J, Montesclaros L, Underwood JG, Masquelier DA, Nishimura SY, Schnall-Levin M, Wyatt PW, Hindson CM, Bharadwaj R, Wong A, Ness KD, Beppu LW, Deeg HJ, McFarland C, Loeb KR, Valente WJ, Ericson NG, Stevens EA, Radich JP, Mikkelsen TS, Hindson BJ, Bielas JH (2017). Massively parallel digital transcriptional profiling of single cells. Nat Commun 8, 14049., articleTitle=Massively parallel digital transcriptional profiling of single cells, refAbstract=null), Reference(id=1321791810842772358, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2023, volume=42, issue=null, pageStart=112676, pageEnd=null, url=null, language=null, rfNumber=[76], rfOrder=82, authorNames=Zhu J, Lolle S, Tang A, Guel B, Kvitko B, Cole B, Coaker G, journalName=Cell Rep, refType=null, unstructuredReference=Zhu J, Lolle S, Tang A, Guel B, Kvitko B, Cole B, Coaker G (2023). Single-cell profiling of Arabidopsis leaves to Pseudomonas syringae infection. Cell Rep 42, 112676., articleTitle=Single-cell profiling of Arabidopsis leaves to Pseudomonas syringae infection, refAbstract=null), Reference(id=1321791810905686919, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2017, volume=65, issue=null, pageStart=631, pageEnd=643, url=null, language=null, rfNumber=[77], rfOrder=83, authorNames=Ziegenhain C, Vieth B, Parekh S, Reinius B, Guillaumet-Adkins A, Smets M, Leonhardt H, Heyn H, Hellmann I, Enard W, journalName=Mol Cell, refType=null, unstructuredReference=Ziegenhain C, Vieth B, Parekh S, Reinius B, Guillaumet-Adkins A, Smets M, Leonhardt H, Heyn H, Hellmann I, Enard W (2017). Comparative analysis of single-cell RNA sequencing methods. Mol Cell 65, 631-643., articleTitle=Comparative analysis of single-cell RNA sequencing methods, refAbstract=null), Reference(id=1321791810972795784, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, doi=null, pmid=null, pmcid=null, year=2017, volume=12, issue=null, pageStart=44, pageEnd=73, url=null, language=null, rfNumber=[78], rfOrder=84, authorNames=Zilionis R, Nainys J, Veres A, Savova V, Zemmour D, Klein AM, Mazutis L, journalName=Nat Protoc, refType=null, unstructuredReference=Zilionis R, Nainys J, Veres A, Savova V, Zemmour D, Klein AM, Mazutis L (2017). Single-cell barcoding and sequencing using droplet microfluidics. Nat Protoc 12, 44-73., articleTitle=Single-cell barcoding and sequencing using droplet microfluidics, refAbstract=null)], funds=[Fund(id=1321791797752349489, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, awardId=32360402, language=CN, fundingSource=国家自然科学基金(32360402), fundOrder=null, country=null), Fund(id=1321791797827846962, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, awardId=B20231093Z, language=CN, fundingSource=内蒙古自治区高等学校科学研究项目(B20231093Z), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1321791793012785934, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, xref=null, ext=[AuthorCompanyExt(id=1321791793033757455, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=College of Forestry, Inner Mongolia Agricultural University, Huhhot 010019), AuthorCompanyExt(id=1321791793050534672, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, companyId=1321791793012785934, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=内蒙古农业大学林学院, 呼和浩特 010019)])], figs=[ArticleFig(id=1321791797135786795, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, label=Figure 1, caption=Schematic workflow of droplet-based single-cell RNA-seq (scRNA-seq) in plants, figureFileSmall=iPwfWPrXIXpjCyXgQ69Udw==, figureFileBig=0AzNWY9BQhws1JYBDumyDg==, tableContent=null), ArticleFig(id=1321791797223867180, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, label=图1, caption=植物中基于液滴法的单细胞RNA测序(scRNA-seq)工作流程示意图, figureFileSmall=iPwfWPrXIXpjCyXgQ69Udw==, figureFileBig=0AzNWY9BQhws1JYBDumyDg==, tableContent=null), ArticleFig(id=1321791797349696301, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, label=Table 1, caption=

Comparative analysis of three droplet-based single-cell RNA-seq systems

, figureFileSmall=null, figureFileBig=null, tableContent=

	Drop-seq (Dolomite Bio)	InDrop (1CellBio)	10× Genomics
珠型	脆性树脂	水凝胶	水凝胶
主要特点	温度控制; 无专有生化试剂	细胞捕获率非常高	乳液中的凝胶珠(GEM)液滴; 液滴内的反转录
每个样本捕获的细胞数	50000+	40000+	80000+
每次运行细胞数	最多8个	最多6个	最多8个
运行时间	20分钟	-	<9分钟
捕获效率	10%	>90%	高达65%
双峰率	6%-8%	4%	每捕获1000个细胞约0.9%; 每捕获10000个细胞约8%
成本	0.16美元(不包括测序)	0.65美元(不含反转录酶(RT), 含测序)	<0.35美元(包括测序)
分析流程	开源	OneCellPipe	Cell Ranger
参考文献	Macosko et al., 2015	Klein et al., 2015; Zilionis et al., 2017	Zheng et al., 2017; Zhang et al., 2019b

), ArticleFig(id=1321791797454553902, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, label=表1, caption=

3种基于液滴的单细胞转录组测序系统比较分析

, figureFileSmall=null, figureFileBig=null, tableContent=

	Drop-seq (Dolomite Bio)	InDrop (1CellBio)	10× Genomics
珠型	脆性树脂	水凝胶	水凝胶
主要特点	温度控制; 无专有生化试剂	细胞捕获率非常高	乳液中的凝胶珠(GEM)液滴; 液滴内的反转录
每个样本捕获的细胞数	50000+	40000+	80000+
每次运行细胞数	最多8个	最多6个	最多8个
运行时间	20分钟	-	<9分钟
捕获效率	10%	>90%	高达65%
双峰率	6%-8%	4%	每捕获1000个细胞约0.9%; 每捕获10000个细胞约8%
成本	0.16美元(不包括测序)	0.65美元(不含反转录酶(RT), 含测序)	<0.35美元(包括测序)
分析流程	开源	OneCellPipe	Cell Ranger
参考文献	Macosko et al., 2015	Klein et al., 2015; Zilionis et al., 2017	Zheng et al., 2017; Zhang et al., 2019b

), ArticleFig(id=1321791797517468463, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=EN, label=Table 2, caption=

Current status of plant single-cell transcriptome research

, figureFileSmall=null, figureFileBig=null, tableContent=

物种	器官/组织	研究方向	测序平台	细胞数量	参考文献
拟南芥(Arabidopsis thaliana)	根尖	转录图谱	10× Genomics	4727	Denyer et al., 2019
	根尖	转录图谱	10× Genomics	7522	Ryu et al., 2019
	根尖	转录图谱	10× Genomics	7695	Zhang et al., 2019a
	根尖	低磷响应机制	10× Genomics	5145	Wendrich et al., 2020
	侧根	侧根发育	10× Genomics	6658	Gala et al., 2021
	根尖	转录图谱	10× Genomics	110000	Shahan et al., 2022
	根	转录图谱	10× Genomics	3221	Jean-Baptiste et al., 2019
	根	转录图谱	Drop-seq	12198	Shulse et al., 2019
	根	木质部细胞亚型	Drop-seq	2400	Turco et al., 2019
	根	基因复制	10× Genomics	11470	Coate et al., 2020
	根	转录图谱	10× Genomics	5283	Dorrity et al., 2021
	叶片	转录图谱	10× Genomics	5230	Kim et al., 2021
	叶片	空间转录图谱	Stereo-seq	17406	Xia et al., 2022
	胚珠原基	雌性细胞发育	10× Genomics	16872	Hou et al., 2021
	叶片	细菌胁迫	10× Genomics	11000	Zhu et al., 2023
	愈伤组织	器官再生	10× Genomics	-	Zhai and Xu, 2021
	愈伤组织	茎顶端分生组织形成机制	Quartz-Seq2	-	Ogura et al., 2023
	愈伤组织	愈伤组织从头再生	10× Genomics	35669	Liu et al., 2022
水稻(Oryza sativa)	根尖	转录图谱	10× Genomics	20000	Liu et al., 2021b
	根和叶片	转录图谱	10× Genomics	237431	Wang et al., 2021c
	根	转录图谱	10× Genomics	27469	Zhang et al., 2021
	雌蕊	雌蕊发育	10× Genomics	6004	Li et al., 2023a
玉米(Zea mays)	根尖	氮胁迫	10× Genomics	7000	Li et al., 2022
	叶片	叶肉细胞发育	10× Genomics	14656	Tao et al., 2022
	叶片	生长高效机制	10× Genomics	7000	Bezrutczyk et al., 2021
	穗	转录图谱	10× Genomics	12525	Xu et al., 2021
	根	抗茎腐病	10× Genomics	29217	Cao et al., 2023
大豆(Glycine max)	根	根瘤发育	10× Genomics	52775	Sun et al., 2023a
	根瘤	根瘤发育	Spatial transcriptomic	26712	Liu et al., 2023
	根瘤	根瘤形成	10× Genomics	14639	Cervantes-Pérez et al., 2023
小麦(Triticum aestivum)	保卫细胞	脱落酸(ABA)胁迫	10× Genomics	8629	Wang et al., 2021a
	根	转录图谱	10× Genomics	6875	Zhang et al., 2023
番茄(Solanum lycopersicum)	茎尖	转录图谱	10× Genomics	13377	Tian et al., 2020
	茎	茎生根和侧根启动调控机制	10× Genomics	3087	Omary et al., 2022
	愈伤组织	空间转录图谱	Spatial transcriptomic	6759	Song et al., 2023
比克氏棉(Gossypium bickii)	子叶	色素腺体发育	10× Genomics	12222	Sun et al., 2023c
陆地棉(G. hirsutum)	胚珠	纤维细胞类型	10× Genomics	21389	Wang et al., 2023
白菜型油菜(Brassica rapa)	叶片	转录图谱	10× Genomics	17372	郭新磊, 2021
	茎尖和 叶片	热胁迫	Drop-seq	30000	Sun et al., 2022
花生(Arachis hypogaea)	叶片	转录图谱	10× Genomics	6815	Liu et al., 2021a
草莓(Fragaria vesca)	叶片	真菌胁迫	10× Genomics	50000	Bai et al., 2022
长春花(Catharanthus ros- eus)	叶片	长春碱生物合成	10× Genomics	25000	Sun et al., 2023b
毛竹(Phyllostachys edulis)	根尖	基根发育	10× Genomics	14279	Cheng et al., 2023
杨树(Populus trichocarpa)	茎	木质部单细胞图谱	Drop-seq	9798	Li et al., 2021
	茎	转录图谱	10× Genomics	12466	Xie et al., 2022
	茎	转录图谱	10× Genomics	6796	Chen et al., 2021
	茎	木质部发育及演化	10× Genomics+ MARS-seq2.0	25166	Tung et al., 2023
	茎	转录图谱	10× Genomics+ Spatial transcriptomic	19185	Li et al., 2023b
	茎	维管组织结构与发育	Spatial transcriptomic	-	Du et al., 2023
木棉(Bombax ceiba)	花及蒴果	纤维发育	10× Genomics	15567	Ding et al., 2023
龙眼(Dimocarpus longan)	愈伤组织	体胚发育	10× Genomics	28727	张舒婷, 2022
茶树(Camellia sinensis)	叶片	儿茶素酯代谢	10× Genomics	16977	Wang et al., 2022
橡胶树(Hevea brasiliensis)	叶片	真菌胁迫	10× Genomics	44102	Liang et al., 2023
红豆杉(Taxus mairei)	茎	紫杉烷合成调控机制	10× Genomics	10900000	Yu et al., 2023

), ArticleFig(id=1321791797597160240, tenantId=1146029695717560320, journalId=1316781310003478668, articleId=1321785454987432529, language=CN, label=表2, caption=

植物单细胞转录组研究现状

, figureFileSmall=null, figureFileBig=null, tableContent=

物种	器官/组织	研究方向	测序平台	细胞数量	参考文献
拟南芥(Arabidopsis thaliana)	根尖	转录图谱	10× Genomics	4727	Denyer et al., 2019
	根尖	转录图谱	10× Genomics	7522	Ryu et al., 2019
	根尖	转录图谱	10× Genomics	7695	Zhang et al., 2019a
	根尖	低磷响应机制	10× Genomics	5145	Wendrich et al., 2020
	侧根	侧根发育	10× Genomics	6658	Gala et al., 2021
	根尖	转录图谱	10× Genomics	110000	Shahan et al., 2022
	根	转录图谱	10× Genomics	3221	Jean-Baptiste et al., 2019
	根	转录图谱	Drop-seq	12198	Shulse et al., 2019
	根	木质部细胞亚型	Drop-seq	2400	Turco et al., 2019
	根	基因复制	10× Genomics	11470	Coate et al., 2020
	根	转录图谱	10× Genomics	5283	Dorrity et al., 2021
	叶片	转录图谱	10× Genomics	5230	Kim et al., 2021
	叶片	空间转录图谱	Stereo-seq	17406	Xia et al., 2022
	胚珠原基	雌性细胞发育	10× Genomics	16872	Hou et al., 2021
	叶片	细菌胁迫	10× Genomics	11000	Zhu et al., 2023
	愈伤组织	器官再生	10× Genomics	-	Zhai and Xu, 2021
	愈伤组织	茎顶端分生组织形成机制	Quartz-Seq2	-	Ogura et al., 2023
	愈伤组织	愈伤组织从头再生	10× Genomics	35669	Liu et al., 2022
水稻(Oryza sativa)	根尖	转录图谱	10× Genomics	20000	Liu et al., 2021b
	根和叶片	转录图谱	10× Genomics	237431	Wang et al., 2021c
	根	转录图谱	10× Genomics	27469	Zhang et al., 2021
	雌蕊	雌蕊发育	10× Genomics	6004	Li et al., 2023a
玉米(Zea mays)	根尖	氮胁迫	10× Genomics	7000	Li et al., 2022
	叶片	叶肉细胞发育	10× Genomics	14656	Tao et al., 2022
	叶片	生长高效机制	10× Genomics	7000	Bezrutczyk et al., 2021
	穗	转录图谱	10× Genomics	12525	Xu et al., 2021
	根	抗茎腐病	10× Genomics	29217	Cao et al., 2023
大豆(Glycine max)	根	根瘤发育	10× Genomics	52775	Sun et al., 2023a
	根瘤	根瘤发育	Spatial transcriptomic	26712	Liu et al., 2023
	根瘤	根瘤形成	10× Genomics	14639	Cervantes-Pérez et al., 2023
小麦(Triticum aestivum)	保卫细胞	脱落酸(ABA)胁迫	10× Genomics	8629	Wang et al., 2021a
	根	转录图谱	10× Genomics	6875	Zhang et al., 2023
番茄(Solanum lycopersicum)	茎尖	转录图谱	10× Genomics	13377	Tian et al., 2020
	茎	茎生根和侧根启动调控机制	10× Genomics	3087	Omary et al., 2022
	愈伤组织	空间转录图谱	Spatial transcriptomic	6759	Song et al., 2023
比克氏棉(Gossypium bickii)	子叶	色素腺体发育	10× Genomics	12222	Sun et al., 2023c
陆地棉(G. hirsutum)	胚珠	纤维细胞类型	10× Genomics	21389	Wang et al., 2023
白菜型油菜(Brassica rapa)	叶片	转录图谱	10× Genomics	17372	郭新磊, 2021
	茎尖和 叶片	热胁迫	Drop-seq	30000	Sun et al., 2022
花生(Arachis hypogaea)	叶片	转录图谱	10× Genomics	6815	Liu et al., 2021a
草莓(Fragaria vesca)	叶片	真菌胁迫	10× Genomics	50000	Bai et al., 2022
长春花(Catharanthus ros- eus)	叶片	长春碱生物合成	10× Genomics	25000	Sun et al., 2023b
毛竹(Phyllostachys edulis)	根尖	基根发育	10× Genomics	14279	Cheng et al., 2023
杨树(Populus trichocarpa)	茎	木质部单细胞图谱	Drop-seq	9798	Li et al., 2021
	茎	转录图谱	10× Genomics	12466	Xie et al., 2022
	茎	转录图谱	10× Genomics	6796	Chen et al., 2021
	茎	木质部发育及演化	10× Genomics+ MARS-seq2.0	25166	Tung et al., 2023
	茎	转录图谱	10× Genomics+ Spatial transcriptomic	19185	Li et al., 2023b
	茎	维管组织结构与发育	Spatial transcriptomic	-	Du et al., 2023
木棉(Bombax ceiba)	花及蒴果	纤维发育	10× Genomics	15567	Ding et al., 2023
龙眼(Dimocarpus longan)	愈伤组织	体胚发育	10× Genomics	28727	张舒婷, 2022
茶树(Camellia sinensis)	叶片	儿茶素酯代谢	10× Genomics	16977	Wang et al., 2022
橡胶树(Hevea brasiliensis)	叶片	真菌胁迫	10× Genomics	44102	Liang et al., 2023
红豆杉(Taxus mairei)	茎	紫杉烷合成调控机制	10× Genomics	10900000	Yu et al., 2023

)], attaches=null, journal=Journal(id=1316780566655369351, delFlag=0, nameCn=植物学报, nameEn=Chinese Bulletin of Botany, nameHistory1=null, nameHistory2=null, issn=1674-3466, eissn=null, cn=11-5705/Q, coden=null, periodic=1, language=CN, oaType=null, ccby=null, superviseOffice=null, ownerOffice=null, pubOffice=null, editorOffice=null, officeType=null, aims=null, clcCode=null, officeProv=null, officeCity=null, officeAddr=null, officeZip=null, officeEmail=null, officePhone=null, editDirector=null, officeDirector=null, officeDirectorPhone=null, officeStaffNum=null, officeEmpNum=null, coverPicUrl=QplH/bt73CPkc4DL3OhnBw==, journalPrice=null, startedYear=null, abbrevIsoEn=Chinese Bulletin of Botany, journalRemark=null, publicationField=null, createdTime=1791874551691, updatedTime=1791874921858, createdBy=18614031015, updatedBy=13701087609, firstLetterCn=Z, firstLetterEn=Z, subjectCode=Life Sciences, subjectName=null, subjectCodeEn=Life Sciences, subjectNameEn=null, picCn=QplH/bt73CPkc4DL3OhnBw==, picEn=HdYH66VJdIVi1kb5mD1yLQ==, jcr=null, cjcr=null, exts=[JournalExt(id=1316782119343468839, language=CN, name=植物学报, nameHistory1=null, nameHistory2=null, managedBy=, sponsoredBy=, publishedBy=, editorOffice=, officeProv=null, officeCity=null, officeAddr=, officeZip=, editDirector=, officeDirector=null, officePhone=null, coverPicUrl=null, journalRemark=, submitArticleUrl=null, websiteUrl=, createdTime=1791874921880, updatedTime=1791874921880, createdBy=13701087609, updatedBy=13701087609, submissionGuidelinesUrl=, submissionAuthorUrl=http://www.chinbullbotany.com/Journalx_zwxtb/authorLogOn.action, submissionEditorUrl=http://www.chinbullbotany.com/Journalx_zwxtb/editorLogOn.action, submissionReviewUrl=http://www.chinbullbotany.com/Journalx_zwxtb/expertLogOn.action, submissionCeEditorUrl=, submissionAeEditorUrl=, option={"copyright":""}), JournalExt(id=1316782119410577704, language=EN, name=Chinese Bulletin of Botany, nameHistory1=null, nameHistory2=null, managedBy=, sponsoredBy=, publishedBy=, editorOffice=, officeProv=null, officeCity=null, officeAddr=, officeZip=, editDirector=, officeDirector=null, officePhone=null, coverPicUrl=null, journalRemark=, submitArticleUrl=null, websiteUrl=, createdTime=1791874921896, updatedTime=1791874921896, createdBy=13701087609, updatedBy=13701087609, submissionGuidelinesUrl=, submissionAuthorUrl=http://www.chinbullbotany.com/Journalx_zwxtb/authorLogOn.action, submissionEditorUrl=http://www.chinbullbotany.com/Journalx_zwxtb/editorLogOn.action, submissionReviewUrl=http://www.chinbullbotany.com/Journalx_zwxtb/expertLogOn.action, submissionCeEditorUrl=, submissionAeEditorUrl=, option={"copyright":""})], databaseList=null, tenantJournalId=1316781310003478668, websiteList=[Website(id=1317081487854384116, webName=null, webTitle=null, webDomain=null, webCopyrigh=null, webIpcNo=null, seoTitle=null, seoKeywords=null, seoDescription=null, tenantJournalId=null, journalId=1316781310003478668, journalNameCn=null, journalNameEn=null, grayFlag=null, tenantId=1146029695717560320, platformId=null, journalGroupId=null, journalGroupNameCn=null, journalGroupNameEn=null, type=1, domain=https://castjournals.cast.org.cn/joweb/zwxb/CN, language=CN, createTime=1791946296895, createBy=18614031015, updateTime=1791946557110, updateBy=18614031015, name=植物学报-中文, tplId=1146099689490845704, title=植物学报, delFlag=0, indexPage=/home, props=[WebsiteProps(id=1317082712305946865, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=articleTextType, value=kx, createTime=1791946588827, updateTime=1791946588827, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712276586734, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=banner, value=null, createTime=1791946588820, updateTime=1791946588820, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712339501300, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=grayFlag, value=0, createTime=1791946588835, updateTime=1791946588835, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712268198125, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=logo, value=https://castjournals.cast.org.cn/joweb/zwxb/CN/file/pic?fileId=5rDTb6HuxXY6gQ5GZZ5Ttg==, createTime=1791946588818, updateTime=1791946588818, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712356278518, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=minRunFlag, value=0, createTime=1791946588839, updateTime=1791946588839, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712293363952, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=picServerUrl, value=https://castjournals.cast.org.cn/joweb/zwxb/CN/file/pic, createTime=1791946588824, updateTime=1791946588824, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712347889909, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=silenceFlag, value=0, createTime=1791946588837, updateTime=1791946588837, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712284975343, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=staticResourcePath, value=https://castjournals.cast.org.cn/joweb/cast_kjdb_cn_619/, createTime=1791946588822, updateTime=1791946588822, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712318529778, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=themeColor, value=null, createTime=1791946588830, updateTime=1791946588830, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082712326918387, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081487854384116, code=themeStyle, value=null, createTime=1791946588832, updateTime=1791946588832, creator=18614031015, updator=18614031015)]), Website(id=1317081488122819581, webName=null, webTitle=null, webDomain=null, webCopyrigh=null, webIpcNo=null, seoTitle=null, seoKeywords=null, seoDescription=null, tenantJournalId=null, journalId=1316781310003478668, journalNameCn=null, journalNameEn=null, grayFlag=null, tenantId=1146029695717560320, platformId=null, journalGroupId=null, journalGroupNameCn=null, journalGroupNameEn=null, type=1, domain=https://castjournals.cast.org.cn/joweb/zwxb/EN, language=EN, createTime=1791946296959, createBy=18614031015, updateTime=1791946552632, updateBy=18614031015, name=植物学报-英文, tplId=1146101810881728533, title=Chinese Bulletin of Botany, delFlag=0, indexPage=/home, props=[WebsiteProps(id=1317082657155043554, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=articleTextType, value=kx, createTime=1791946575678, updateTime=1791946575678, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657096323295, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=banner, value=null, createTime=1791946575664, updateTime=1791946575664, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657478004965, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=grayFlag, value=0, createTime=1791946575755, updateTime=1791946575755, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657071157470, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=logo, value=https://castjournals.cast.org.cn/joweb/zwxb/EN/file/pic?fileId=5rDTb6HuxXY6gQ5GZZ5Ttg==, createTime=1791946575658, updateTime=1791946575658, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657540919527, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=minRunFlag, value=0, createTime=1791946575770, updateTime=1791946575770, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657146654945, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=picServerUrl, value=https://castjournals.cast.org.cn/joweb/zwxb/EN/file/pic, createTime=1791946575676, updateTime=1791946575676, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657490587878, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=silenceFlag, value=0, createTime=1791946575758, updateTime=1791946575758, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657117294816, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=staticResourcePath, value=https://castjournals.cast.org.cn/joweb/cast_kjdb_en_623/, createTime=1791946575669, updateTime=1791946575669, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657163432163, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=themeColor, value=null, createTime=1791946575680, updateTime=1791946575680, creator=18614031015, updator=18614031015), WebsiteProps(id=1317082657171820772, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1317081488122819581, code=themeStyle, value=null, createTime=1791946575682, updateTime=1791946575682, creator=18614031015, updator=18614031015)])], journalTitle=植物学报, weixinUrl=null, journalUrl=https://www.chinbullbotany.com/, iacademicId=null, status=1, seqNo=null, journalTitleEn=Chinese Bulletin of Botany, journalPhotoCn=QplH/bt73CPkc4DL3OhnBw==, journalPhotoEn=HdYH66VJdIVi1kb5mD1yLQ==, journalFirstLetter=Z, journalRecommend=null, journalNew=null, journalCollection=null, jcrJf=null, cjcrJf=null, jcrJfStr=null, cjcrJfStr=null, submissionFirstDecision=null, sciSubjectClassification=null, casSubjectClassification=null, citeScore=null, totalCitationFrequency=null, icpCode=null, psCode=null, advertisingLicenseCode=null, copyrightInformation=null, country=null, option=, provinceCode=null, provinceName=null, collectFlag=false, interPubPlatform=, interPubPlatformUrl=null), detailUrlCn=https://castjournals.cast.org.cn/joweb/zwxb/CN/10.11983/CBB24048, detailUrlEn=https://castjournals.cast.org.cn/joweb/zwxb/EN/10.11983/CBB24048, pdfUrlCn=https://castjournals.cast.org.cn/joweb/zwxb/CN/PDF/10.11983/CBB24048, pdfUrlEn=https://castjournals.cast.org.cn/joweb/zwxb/EN/PDF/10.11983/CBB24048, aliStartDate=0, aliEndDate=0, collectionFlag=false, citedCount=null, citedUrl=null, previewStatus=0, delFlag=0, hasFullText=1, orderTime=1736438400000, fullTextJson=null, articleText=null, reference=null)