Article(id=1276618373278593962, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276618341674520821, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2025.12.005, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1755187200000, receivedDateStr=2025-08-15, revisedDate=null, revisedDateStr=null, acceptedDate=1757433600000, acceptedDateStr=2025-09-10, onlineDate=1782299138612, onlineDateStr=2026-06-24, pubDate=1766592000000, pubDateStr=2025-12-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1782299138612, onlineIssueDateStr=2026-06-24, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1782299138612, creator=13701087609, updateTime=1782299138612, updator=13701087609, issue=Issue{id=1276618341674520821, tenantId=1146029695717560320, journalId=1235980609244409860, year='2025', volume='46', issue='12', pageStart='2817', pageEnd='3084', issueExtLink='null', onlineDate='null', pubDate='1766592000000', pubDateStr='2025-12-25', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1782299131077, creator='13701087609', updateTime=1782299208862, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1276618668385637092, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276618341674520821, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1276618668385637093, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276618341674520821, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=2868, endPage=2876, ext={EN=ArticleExt(id=1276618373576389548, articleId=1276618373278593962, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Cloning, Subcellular Localization and Expression Analysis of the Gene AsMADS12 in Aquilaria sinensis, columnId=1236256430337085821, journalTitle=Chinese Journal of Tropical Crops, columnName=Omics & Biotechnology, runingTitle=null, highlight=null, articleAbstract=

Aquilaria sinensis, a plant belonging to the genus Aquilaria of the Thymelaeaceae family, can produce agarwood when exposed to natural factors (such as lightning strikes, fire, and insect bite) or artificial factors (such as cuts, holes, and inoculation of fungi). MADS is a transcription factor that plays a significant role in plant growth and development and stress response. However, its function in A. sinensis remains unclear. To elucidate the stress response of MADS-box genes in A. sinensis after injury, this study utilized transcriptomic data derived from A. sinensis to expression heatmaps and screen for differentially expressed genes, leading to the identification and cloning of a MADS-box encoding gene, designated AsMADS12, which exhibited significant differential expression. Comprehensive analyses were subsequently conducted on the domain architecture, physicochemical properties, phylogenetic relationships, and predicted secondary and tertiary structures of AsMADS12. The expression dynamics of the AsMADS12 at various time points after methyl jasmonate (MeJA) treatment were assessed via real-time quantitative PCR (RT-qPCR). Furthermore, subcellular localization of the AsMADS12 was determined by transiently expressing in onion epidermal cells (Agrobacterium-mediated infiltration) and observing fluorescence under a confocal laser scanning microscope. Sequence and evolutionary analyses revealed that AsMADS12 possessed a complete open reading frame (ORF) of 678 bp, encoding a protein of 255 amino acids. The predicted molecular weight of the encoded protein was 25.28 kDa. AsMADS12 contained a typical MEF2-like MADS domain and was classified as a MIKC-type transcription factor. The secondary structure of the protein was mainly composed of 52.00% α-helix, 11.56% extended chain, and 36.44% random coil. Phylogenetic cluster analysis revealed that AsMADS12 was clustered in the same branch as the MADS of Citrus sinensis and Citrus trifoliata. The subcellular localization experiment showed that the AsMADS12 protein was located in the nucleus. The real-time fluorescence quantitative results indicated that methyl jasmonate treatment could induce the expression of AsMADS12, and the expression level was the highest at 24 hours after treatment. It was speculated that AsMADS12 might play a potential role in the formation of agarwood in A. sinensis. This study completed the cloning of the gene for the first time and conducted preliminary exploration, laying the foundation for further research on whether it participates in the formation of agarwood and its role in biotic or abiotic stress responses, thereby providing a theoretical basis for understanding the molecular regulatory mechanism of agarwood formation in A sinensis.

, authors=null, authorsList=Lanshu LIU, Wenli MEI, Jiahong ZHU, Wenhua DONG, Yuji LI, Shoubai LIU, Haofu DAI, authorCompany=null, correspAuthors=Shoubai LIU, Haofu DAI, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1276618375367357374, articleId=1276618373278593962, tenantId=1146029695717560320, journalId=1235980609244409860, language=CN, title=白木香AsMADS12基因克隆、亚细胞定位与表达分析, columnId=1236256430517440904, journalTitle=热带作物学报, columnName=组学与生物技术, runingTitle=null, highlight=null, articleAbstract=

白木香(Aquilaria sinensis)为瑞香科(Thymelaeaceae)沉香属(Aquilaria)植物,在受到自然因素(雷劈、火烧、虫蛀等)或人为因素(砍伤、打洞、接菌等)胁迫下会产生沉香。MADS转录因子在植物生长发育和逆境胁迫响应过程中发挥着重要的转录调控作用,但其在白木香中的作用尚不清楚。为了解MADS在白木香受到伤害后的胁迫响应机制,本研究基于白木香转录组数据,绘制表达量热图,筛选并克隆到一条表达差异较大且表达量较高的MADS转录因子AsMADS12基因,对其结构域、理化性质、系统发育及蛋白二、三级结构等进行分析,并通过实时荧光定量(RT-qPCR)检测AsMADS12基因在茉莉酸甲酯处理不同时间后的表达量以及通过浸染洋葱在激光共聚焦显微镜下观察AsMADS12蛋白亚细胞定位。结果显示:AsMADS12具有完整的开放阅读框,长度为678 bp,可编码255个氨基酸,其编码蛋白的分子量为25.28 kDa,拥有典型的MEF2_like MADS结构域,属于MIKC型转录因子;AsMADS12蛋白的二级结构主要由52.00%的α-螺旋、11.56%的延伸链和36.44%的无规则卷曲组成;系统进化聚类分析发现AsMADS12与甜橙(Citrus sinensis)和枳(Citrus trifoliata)的MADS聚于同一分支;亚细胞定位试验显示,AsMADS12蛋白定位于细胞核;实时荧光定量结果表明,茉莉酸甲酯处理能诱导AsMADS12基因的表达,且在处理24 h时的表达量最高,推测AsMADS12在白木香结香过程中具有潜在作用。本研究首次完成AsMADS12基因的克隆并开展初步探索,为后续深入研究其是否参与结香过程,以及在生物或非生物胁迫响应中的作用奠定基础,为解析白木香结香的分子调控机制提供理论依据。

, authors=

刘兰舒(1999—),女,硕士研究生,研究方向:分子生物学。

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* 刘寿柏(LIU Shoubai),E-mail:
戴好富(DAI Haofu),E-mail:
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2.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Natural Products Research and Development of Li Folk Medicine of Hainan Province / International Joint Research Center of Agarwood, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1276618376101360592, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, authorId=1276618375921005515, language=CN, stringName=刘兰舒, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1.海南大学热带农林学院/热带特色林木花卉遗传与种质创新教育部重点实验室,海南儋州 571737
2.中国热带农业科学院热带生物技术研究所/海南省黎药资源天然产物研究与利用重点实验室/沉香国际联合研究中心,海南海口 571101, bio={"content":"

刘兰舒(1999—),女,硕士研究生,研究方向:分子生物学。

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刘兰舒(1999—),女,硕士研究生,研究方向:分子生物学。

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Plant Metabolism and Chemodiversity, 2023, 14: 1243323., articleTitle=Systematic evolution of bZIP transcription factors in Malvales and functional exploration of AsbZIP14 and AsbZIP41 in Aquilaria sinensis, refAbstract=null), Reference(id=1276618397769134147, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, doi=null, pmid=null, pmcid=null, year=2023, volume=244, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[34], rfOrder=51, authorNames=YANG Y, ZHU J H, WANG H, GUO D, WANG Y, MEI W L, PENG S Q, DAI H F, journalName=International Journal of Biological Macromolecules, refType=null, unstructuredReference=YANG Y, ZHU J H, WANG H, GUO D, WANG Y, MEI W L, PENG S Q, DAI H F. Systematic investigation of the R2R3-MYB gene family in Aquilaria sinensis reveals a transcriptional repressor AsMYB054 involved in 2-(2-phenylethyl) chromone biosynthesis[J]. International Journal of Biological Macromolecules, 2023, 244: 125302., articleTitle=Systematic investigation of the R2R3-MYB gene family in Aquilaria sinensis reveals a transcriptional repressor AsMYB054 involved in 2-(2-phenylethyl) chromone biosynthesis, refAbstract=null)], funds=[Fund(id=1276618389003038733, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, awardId=32171747; 32460415, language=CN, fundingSource=国家自然科学基金项目(32171747; 32460415), fundOrder=null, country=null), Fund(id=1276618389074341902, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, awardId=323CXTD388, language=CN, fundingSource=海南省自然科学基金项目(323CXTD388), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1276618375589655488, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, xref=1., ext=[AuthorCompanyExt(id=1276618375598044097, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, companyId=1276618375589655488, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.School of Tropical Agriculture and Forestry, Hainan University / Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, Danzhou, Hainan 571737, China), AuthorCompanyExt(id=1276618375610627010, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, companyId=1276618375589655488, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.海南大学热带农林学院/热带特色林木花卉遗传与种质创新教育部重点实验室,海南儋州 571737)]), AuthorCompany(id=1276618375669347267, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, xref=2., ext=[AuthorCompanyExt(id=1276618375677735876, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, companyId=1276618375669347267, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Natural Products Research and Development of Li Folk Medicine of Hainan Province / International Joint Research Center of Agarwood, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1276618375686124485, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, companyId=1276618375669347267, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所/海南省黎药资源天然产物研究与利用重点实验室/沉香国际联合研究中心,海南海口 571101)]), AuthorCompany(id=1276618375749039047, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, xref=3., ext=[AuthorCompanyExt(id=1276618375757427656, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, companyId=1276618375749039047, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572000, China), AuthorCompanyExt(id=1276618375761621961, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, companyId=1276618375749039047, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3.中国热带农业科学院三亚研究院,海南三亚 572000)])], figs=[ArticleFig(id=1276618386897499132, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 1, caption=FPKM of AsMADS, figureFileSmall=Y3sJZMNUnO3Na8Aa5HcSgQ==, figureFileBig=6mjSzi6hRvqvYm5u1of1VA==, tableContent=null), ArticleFig(id=1276618386993968125, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图1, caption=AsMADS基因的FPKM值, figureFileSmall=Y3sJZMNUnO3Na8Aa5HcSgQ==, figureFileBig=6mjSzi6hRvqvYm5u1of1VA==, tableContent=null), ArticleFig(id=1276618387425981438, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 2, caption=Cloning of AsMADS12, figureFileSmall=3Pp4tOmXud3qdmCb/f4I5Q==, figureFileBig=FnpQQQyJfQg1Hm4q2V2t1g==, tableContent=null), ArticleFig(id=1276618387497284607, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图2, caption=AsMADS12基因克隆

M: DNA maker V.

, figureFileSmall=3Pp4tOmXud3qdmCb/f4I5Q==, figureFileBig=FnpQQQyJfQg1Hm4q2V2t1g==, tableContent=null), ArticleFig(id=1276618387715388416, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 3, caption=Bioinformatics analysis of AsMADS12 protein, figureFileSmall=uO79/Wwnk7OXEnFE1BOKZw==, figureFileBig=02adQ4hdjJ4vDHB3JWOKbg==, tableContent=null), ArticleFig(id=1276618387782496256, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图3, caption=AsMADS12蛋白生物信息学分析

A:AsMADS12蛋白亲疏水性;B:AsMADS12信号肽;C:AsMADS12蛋白跨膜结构;D:AsMADS12磷酸化位点。

, figureFileSmall=uO79/Wwnk7OXEnFE1BOKZw==, figureFileBig=02adQ4hdjJ4vDHB3JWOKbg==, tableContent=null), ArticleFig(id=1276618387845410817, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 4, caption=Structure prediction of AsMADS12 protein, figureFileSmall=VS/Dqjixxj900EGbKY5umg==, figureFileBig=wGNQ6kYsEwwKo6fFO8Ww5w==, tableContent=null), ArticleFig(id=1276618388084486146, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图4, caption=AsMADS12蛋白结构预测

A:AsMADS12蛋白的二级结构,蓝色:α-螺旋,红色:延伸链,紫色:无规则卷曲;B:AsMADS12蛋白的三级结构;C:AsMADS12蛋白的结构域。

, figureFileSmall=VS/Dqjixxj900EGbKY5umg==, figureFileBig=wGNQ6kYsEwwKo6fFO8Ww5w==, tableContent=null), ArticleFig(id=1276618388155789315, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 5, caption=Amino acid homologous sequence alignment of AsMADS12, figureFileSmall=KQ4FssKV0s1it68qdBg8uQ==, figureFileBig=YcIRU/cg9R5iqXS4oQP8ZA==, tableContent=null), ArticleFig(id=1276618388264841220, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图5, caption=AsMADS12氨基酸同源序列比对, figureFileSmall=KQ4FssKV0s1it68qdBg8uQ==, figureFileBig=YcIRU/cg9R5iqXS4oQP8ZA==, tableContent=null), ArticleFig(id=1276618388399058949, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 6, caption=Phylogenetic tree of AsMADS12 and MADS amino acid sequences of other plant, figureFileSmall=AaXBmdmGzdMtekJMKjsP8Q==, figureFileBig=gLtFJhUiReoLE0nbDIqnFA==, tableContent=null), ArticleFig(id=1276618388470362118, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图6, caption=AsMADS12与其他植物MADS氨基酸序列系统发育树, figureFileSmall=AaXBmdmGzdMtekJMKjsP8Q==, figureFileBig=gLtFJhUiReoLE0nbDIqnFA==, tableContent=null), ArticleFig(id=1276618388524888071, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 7, caption=Subcellular localisation of AsMADS12, figureFileSmall=JrRXe0fTx6V33YS8IZkk8g==, figureFileBig=25PL6sxG0rDz+shmvyESGA==, tableContent=null), ArticleFig(id=1276618388604579848, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图7, caption=AsMADS12亚细胞定位, figureFileSmall=JrRXe0fTx6V33YS8IZkk8g==, figureFileBig=25PL6sxG0rDz+shmvyESGA==, tableContent=null), ArticleFig(id=1276618388671688713, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Fig. 8, caption=Expression level of AsMADS12 under Ethylene releaser treatments, figureFileSmall=NkEQEBLh8ToXKyfjCAptvw==, figureFileBig=d51Q2NWXIBgkQYU3inlRjA==, tableContent=null), ArticleFig(id=1276618388738797578, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=图8, caption=AsMADS12在茉莉酸甲酯处理下的表达分析

ns表示无显著差异,**和****分别表示在0.01和0.0001水平差异极显著。

, figureFileSmall=NkEQEBLh8ToXKyfjCAptvw==, figureFileBig=d51Q2NWXIBgkQYU3inlRjA==, tableContent=null), ArticleFig(id=1276618388814295051, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=EN, label=Tab. 1, caption=

Primers sequence information

, figureFileSmall=null, figureFileBig=null, tableContent=
引物名称Primer name引物序列(5′-3′)Primer sequence(5′-3′)
AsMADS12-FATGGCGAGAGAGAAGATTAAGATTAAG
AsMADS12-RCTACACGAGAGCTAGCGCTAAT
AsMADS12-NCFAGTGGTCTCTGTCCAGTCCT ATGGCGAGAGAGAAGATTAAGATTAAG
AsMADS12-NCRGGTCTCAGCAGACCACAAGT CTACACGAGAGCTAGCGCTAAT
AsMADS-qFATGGGATGGACATAGAGGATTTG
AsMADS-qRCGAGTTGGCTTATCTCCTTCTT
AsGADPH-FCTGGTATGGCATTCCGTGTA
AsGADPH-RAACCACATCCTCTTCGGTGTA
), ArticleFig(id=1276618388885598220, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276618373278593962, language=CN, label=表1, caption=

引物序列信息

, figureFileSmall=null, figureFileBig=null, tableContent=
引物名称Primer name引物序列(5′-3′)Primer sequence(5′-3′)
AsMADS12-FATGGCGAGAGAGAAGATTAAGATTAAG
AsMADS12-RCTACACGAGAGCTAGCGCTAAT
AsMADS12-NCFAGTGGTCTCTGTCCAGTCCT ATGGCGAGAGAGAAGATTAAGATTAAG
AsMADS12-NCRGGTCTCAGCAGACCACAAGT CTACACGAGAGCTAGCGCTAAT
AsMADS-qFATGGGATGGACATAGAGGATTTG
AsMADS-qRCGAGTTGGCTTATCTCCTTCTT
AsGADPH-FCTGGTATGGCATTCCGTGTA
AsGADPH-RAACCACATCCTCTTCGGTGTA
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白木香AsMADS12基因克隆、亚细胞定位与表达分析
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刘兰舒 1, 2 , 梅文莉 2, 3 , 朱家红 2, 3 , 董文化 2 , 李玉姬 2 , 刘寿柏 1, * , 戴好富 2, 3, *
热带作物学报 | 组学与生物技术 2025,46(12): 2868-2876
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热带作物学报 |组学与生物技术 2025 , 46 (12) : 2868 -2876
白木香AsMADS12基因克隆、亚细胞定位与表达分析
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刘兰舒1, 2, 梅文莉2, 3, 朱家红2, 3, 董文化2, 李玉姬2, 刘寿柏1, * , 戴好富2, 3, *
作者信息
  • 1.海南大学热带农林学院/热带特色林木花卉遗传与种质创新教育部重点实验室,海南儋州 571737
  • 2.中国热带农业科学院热带生物技术研究所/海南省黎药资源天然产物研究与利用重点实验室/沉香国际联合研究中心,海南海口 571101
  • 3.中国热带农业科学院三亚研究院,海南三亚 572000
通讯作者:
* 刘寿柏(LIU Shoubai),E-mail:
戴好富(DAI Haofu),E-mail:
Cloning, Subcellular Localization and Expression Analysis of the Gene AsMADS12 in Aquilaria sinensis
Lanshu LIU1, 2, Wenli MEI2, 3, Jiahong ZHU2, 3, Wenhua DONG2, Yuji LI2, Shoubai LIU1, * , Haofu DAI2, 3, *
Affiliations
  • 1.School of Tropical Agriculture and Forestry, Hainan University / Key Laboratory of Genetics and Germplasm Innovation of Tropical Special Forest Trees and Ornamental Plants, Ministry of Education, Danzhou, Hainan 571737, China
  • 2.Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Natural Products Research and Development of Li Folk Medicine of Hainan Province / International Joint Research Center of Agarwood, Haikou, Hainan 571101, China
  • 3.Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572000, China
出版时间: 2025-12-25 doi: 10.3969/j.issn.1000-2561.2025.12.005
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白木香(Aquilaria sinensis)为瑞香科(Thymelaeaceae)沉香属(Aquilaria)植物,在受到自然因素(雷劈、火烧、虫蛀等)或人为因素(砍伤、打洞、接菌等)胁迫下会产生沉香。MADS转录因子在植物生长发育和逆境胁迫响应过程中发挥着重要的转录调控作用,但其在白木香中的作用尚不清楚。为了解MADS在白木香受到伤害后的胁迫响应机制,本研究基于白木香转录组数据,绘制表达量热图,筛选并克隆到一条表达差异较大且表达量较高的MADS转录因子AsMADS12基因,对其结构域、理化性质、系统发育及蛋白二、三级结构等进行分析,并通过实时荧光定量(RT-qPCR)检测AsMADS12基因在茉莉酸甲酯处理不同时间后的表达量以及通过浸染洋葱在激光共聚焦显微镜下观察AsMADS12蛋白亚细胞定位。结果显示:AsMADS12具有完整的开放阅读框,长度为678 bp,可编码255个氨基酸,其编码蛋白的分子量为25.28 kDa,拥有典型的MEF2_like MADS结构域,属于MIKC型转录因子;AsMADS12蛋白的二级结构主要由52.00%的α-螺旋、11.56%的延伸链和36.44%的无规则卷曲组成;系统进化聚类分析发现AsMADS12与甜橙(Citrus sinensis)和枳(Citrus trifoliata)的MADS聚于同一分支;亚细胞定位试验显示,AsMADS12蛋白定位于细胞核;实时荧光定量结果表明,茉莉酸甲酯处理能诱导AsMADS12基因的表达,且在处理24 h时的表达量最高,推测AsMADS12在白木香结香过程中具有潜在作用。本研究首次完成AsMADS12基因的克隆并开展初步探索,为后续深入研究其是否参与结香过程,以及在生物或非生物胁迫响应中的作用奠定基础,为解析白木香结香的分子调控机制提供理论依据。

白木香  /  AsMADS12  /  生物信息学  /  亚细胞定位  /  表达分析

Aquilaria sinensis, a plant belonging to the genus Aquilaria of the Thymelaeaceae family, can produce agarwood when exposed to natural factors (such as lightning strikes, fire, and insect bite) or artificial factors (such as cuts, holes, and inoculation of fungi). MADS is a transcription factor that plays a significant role in plant growth and development and stress response. However, its function in A. sinensis remains unclear. To elucidate the stress response of MADS-box genes in A. sinensis after injury, this study utilized transcriptomic data derived from A. sinensis to expression heatmaps and screen for differentially expressed genes, leading to the identification and cloning of a MADS-box encoding gene, designated AsMADS12, which exhibited significant differential expression. Comprehensive analyses were subsequently conducted on the domain architecture, physicochemical properties, phylogenetic relationships, and predicted secondary and tertiary structures of AsMADS12. The expression dynamics of the AsMADS12 at various time points after methyl jasmonate (MeJA) treatment were assessed via real-time quantitative PCR (RT-qPCR). Furthermore, subcellular localization of the AsMADS12 was determined by transiently expressing in onion epidermal cells (Agrobacterium-mediated infiltration) and observing fluorescence under a confocal laser scanning microscope. Sequence and evolutionary analyses revealed that AsMADS12 possessed a complete open reading frame (ORF) of 678 bp, encoding a protein of 255 amino acids. The predicted molecular weight of the encoded protein was 25.28 kDa. AsMADS12 contained a typical MEF2-like MADS domain and was classified as a MIKC-type transcription factor. The secondary structure of the protein was mainly composed of 52.00% α-helix, 11.56% extended chain, and 36.44% random coil. Phylogenetic cluster analysis revealed that AsMADS12 was clustered in the same branch as the MADS of Citrus sinensis and Citrus trifoliata. The subcellular localization experiment showed that the AsMADS12 protein was located in the nucleus. The real-time fluorescence quantitative results indicated that methyl jasmonate treatment could induce the expression of AsMADS12, and the expression level was the highest at 24 hours after treatment. It was speculated that AsMADS12 might play a potential role in the formation of agarwood in A. sinensis. This study completed the cloning of the gene for the first time and conducted preliminary exploration, laying the foundation for further research on whether it participates in the formation of agarwood and its role in biotic or abiotic stress responses, thereby providing a theoretical basis for understanding the molecular regulatory mechanism of agarwood formation in A sinensis.

Aquilaria sinensis  /  AsMADS12  /  bioinformatics  /  subcellular localization  /  expression analysis
刘兰舒, 梅文莉, 朱家红, 董文化, 李玉姬, 刘寿柏, 戴好富. 白木香AsMADS12基因克隆、亚细胞定位与表达分析. 热带作物学报, 2025 , 46 (12) : 2868 -2876 . DOI: 10.3969/j.issn.1000-2561.2025.12.005
Lanshu LIU, Wenli MEI, Jiahong ZHU, Wenhua DONG, Yuji LI, Shoubai LIU, Haofu DAI. Cloning, Subcellular Localization and Expression Analysis of the Gene AsMADS12 in Aquilaria sinensis[J]. Chinese Journal of Tropical Crops, 2025 , 46 (12) : 2868 -2876 . DOI: 10.3969/j.issn.1000-2561.2025.12.005
沉香是瑞香科(Thymelaeaceae)沉香属(Aquilaria)或拟沉香属(Gyrinops)植物在受到自然因素(雷劈、风折、虫蛀等)或人为因素(砍伤、打洞、接菌等)的影响下产生的含树脂的芯材[1]。白木香[Aquilaria sinensis(Lour.)Spreng]又名土沉香,是我国药典法定的沉香唯一基原植物,广泛分布于我国广东、广西、海南、云南等南部地区[2-3]。沉香是重要的传统药用资源,其应用历史可追溯至多国传统医学体系,在中国、印度、日本及东南亚的医学典籍中均有详实记录[4-5],该药材具有调理气机、缓解疼痛、温中和胃、抑制呕吐等功效,适用于胸腹胀痛、咳喘、风湿痹痛、高热不退、肾气亏虚等多种证候[2]。沉香的核心化学组成为倍半萜类和2-(2-苯乙基)色酮类化合物,现代药理学研究揭示沉香既能调节中枢神经功能[6],具有抗癌、抗氧化、抗抑郁、抑菌及镇静催眠等作用,临床上可用于支气管疾病、胃病、冠心病和睡眠障碍等治疗,同时对糖尿病、阿尔茨海默症等复杂疾病亦有潜在治疗价值[2,7-10]。由于沉香兼具药用和经济双重价值,导致沉香属植物长期遭受过度采伐,致使其野生种群面临灭绝风险,现已被收录于《濒危野生动植物种国际贸易公约》附录II名录[11]。因此,解决沉香资源短缺问题的关键在于全面解析白木香的产香机制、创新结香技术以及提高产香率,从而缓解对野生资源的依赖并促进可持续利用。
作为真核生物进化过程中高度保守的转录调控家族,MADS-box基因家族成员在植物、动物及真菌三大类群中普遍存在,广泛参与植物生长发育,且在应对非生物胁迫和调节植物次生代谢产物的合成中发挥重要作用[12]。研究表明,MADS-box家族基因可参与调控干旱胁迫、温度胁迫、盐胁迫以及其他非生物胁迫反应[13]。如番茄(Solanum lycopersicum)MADS-box家族基因SlMADS48可与干旱相关基因启动子区结合,进而响应干旱胁迫[14];小麦(Triticum aestivuml)中多个MADS-box家族基因表达与高温诱导有关,尤其在高温下TaMADS26的过表达可以提高小麦的耐受性[15];在盐胁迫下过表达水稻(Oryza sativaOsMADS25能提高水稻种子的发芽率[16]。此外,MADS-box家族基因还被证实参与调控植物次生代谢产物的生物合成途径。在油菜种子发育与油脂合成阶段,AGL11呈现一定表达特征[17],而云南移[木衣](Docynia delavayi(Franch.)Schneid)的DdMADS42基因表达趋势与其相似,基于前期研究,王溪唯等[18]推测DdMADS42可能参与油脂的合成。基于上述调控机制,本研究推测MADS-box家族基因可能同样介导了白木香在受到物理损伤或生物胁迫后的应激响应过程,这种调控作用可能影响沉香次生代谢产物的合成与积累。
本研究基于本课题组已有的白木香转录组数据,结合生物信息学分析,克隆并鉴定AsMADS12基因,对该基因编码蛋白的理化性质、进化关系、结构特征、亚细胞定位等进行分析,并通过qPCR检测其在茉莉酸甲酯处理下的表达趋势,为后续探究AsMADS12是否参与沉香形成过程,及其在生物与非生物胁迫响应中的作用提供理论基础,有助于解析白木香结香的分子调控机制。
试验材料种植于中国热带农业科学院植物园。对白木香茎干进行划伤后用茉莉酸甲酯溶液沾湿棉花进行包裹处理,在处理0、3、6、24、72、120 h后采集处理样品进行液氮速冻并研磨成粉,保存于-80 ℃冰箱备用。
取保存于-80 ℃冰箱的白木香叶片样品,置于液氮中冷冻磨样,提取总RNA,并通过凝胶电泳检测RNA质量,选出清晰、无降解且长度相符的RNA,测定其浓度,然后使用反转录试剂盒将白木香RNA反转录为cDNA,产物保存于-80 ℃超低温冰箱。
结香剂处理能够激活白木香茎干次生代谢物合成并促进沉香的形成。本课题组前期研究中已对白木香茎干进行结香剂处理,并对处理0、3、6、9 d后的白木香茎干进行采样,经转录组测序得到白木香转录组数据[19]。根据白木香转录组数据库筛出候选MADS-box基因,设计引物(表1),以白木香叶片cDNA为模版,采用高保真酶进行PCR扩增,其产物进行电泳分离纯化,并以DNA marker V作为分子量参照比对。切取目标大小单一明亮条带,使用胶回收试剂盒进行凝胶回收纯化,纯化后的DNA片段于16 ℃进行载体(pMD-19T)连接,连接后产物全部转入E.coli DH5α中,筛选阳性克隆鉴定,提取质粒并送公司测序验证,将测序正确的质粒于-20 ℃保存。
本研究采用多平台联用对AsMADS12蛋白进行全面的生物信息学分析。利用NCBI(https://www.ncbi.nlm.nih.gov/Structure/cdd/wrpsb.cgi)数据库的工具鉴定保守功能域;使用MEGA X64软件进行AsMADS12与其他物种同源蛋白的多序列比对;借助NPS@服务器的GOR4(https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_gor4.html)二级结构预测模块解析分子量及等电点等基础理化参数;运用TMHMM-2.0(https://services.healthtech.dtu.dk/services/TMHMM-2.0/)在线软件算法推定跨膜螺旋拓扑结构;采用SignalP 5.0(https://services.healthtech.dtu.dk/services/SignalP-5.0/)在线软件系统识别分泌信号肽序列;基于NetPhos-3.1(https://services.healthtech.dtu.dk/services/NetPhos-3.1/)平台预测潜在磷酸化修饰位点;最终依托SWISS-MODEL(http://swissmodel.expasy.org/)同源建模服务器构建三级结构。
基于前期目的基因克隆所得引物,根据NC克隆试剂盒加入NC接头(表1)进行引物合成。以AsMADS12基因克隆质粒为模板进行PCR扩增,扩增产物经电泳分离验证,以DNA Maker Ⅴ作为参照,选择出单一明亮且大小相符的条带,进行胶回收,将胶回收产物与载体pNC-Green-SubN进行连接转化,筛选阳性克隆测序,提取质粒于-20 ℃保存备用。
将连接载体pNC-Green-SubN的重组质粒pNC-Green-SubN-AsMADS12转入A. tumefaciens GV3101(pSoup-p19)中培养,挑选菌落进行PCR鉴定阳性菌株并扩大培养。将扩大培养得到的菌液进行重悬后浸染洋葱细胞,28 ℃避光培养2 d后加入DAPI荧光染料,用激光共聚焦显微镜进行观察,拍照记录。
基于AsMADS12基因序列,借助Integrated DNA Technologies IDT平台(idtdna.com)在线设计其RT-qPCR引物(表1),以茉莉酸甲酯(MeJA)处理不同时间(0、3、6、24、72、120 h)的白木香叶片cDNA样品为模板,以白木香GADPH为内参基因[20-21],使用MX3005P实时荧光定量PCR仪检测AsMADS12基因表达量。试验进行3次独立重复,并采用2-ΔΔCt法进行相对表达量分析。
根据表达量使用TBtools进行分析,得到13个AsMADS基因的FPKM值(图1)。通过热图比较发现,AsMADS12基因在受到结香剂诱导后的第6天与其他时间相比有所提高,且表达量较高。以白木香叶片总RNA经反转录合成的cDNA为模板,采用基因特异性引物AsMADS12-F/R(10 μmol/L)进行PCR扩增,得到一条与AsMADS12基因片段大致相符且长度约为600 bp的条带(图2)。对PCR产物进行胶回收,载体构建转化后进行测序。测序结果显示,AsMADS12基因序列长度为678 bp。
AsMADS12蛋白分子式为C1087H1811N313O350S13,相对分子量约为25.28 kDa,该蛋白含天冬氨酸与谷氨酸负电荷总数为35个,精氨酸和赖氨酸正电荷总数为37个;pI值为8.33,脂肪酸指数为82.36,不稳定指数为44.25。亲水性系数为-0.578,多肽链存在明显亲水区域,预测为稳定亲水性蛋白(图3A)。经SignaIP 5.0软件预测,该蛋白无信号肽剪切位点,属非分泌型蛋白(图3B)。TMHMM server V2.0软件分析显示AsMADS12蛋白无跨膜区,属胞外蛋白(图3C)。NetPhos 3.1软件预测结果显示该蛋白存在酪氨酸、苏氨酸及丝氨酸磷酸化位点(图3D)。
AsMADS12蛋白的二、三级结构预测以及保守结构域分析显示,AsMADS12蛋白二级结构由α-螺旋(52.00%)、延伸链(11.56%)和无规则卷曲(36.44%)组成(图4A)。基于AlphaFold Protein Structure Database构建的三级结构模型(图4B)表明,其构象主要由α-螺旋和无规则卷曲构成,该预测与二级结构结果相同。AsMADS12具有典型的MADS结构域特征,即MEF2_like MADS保守域(图4C)。
将AsMADS12与甜橙(Citrus sinensis)、枳(Citrus trifoliata)、芒果(Mangifera indica)、莴苣(Lactuca sativa)、番茄(Solanum lycopersicum)、柑橘(Citrus x clementina)、白桦(Betula platyphylla)、玉米(Zea mays)、小麦(Triticum aestivum)、水稻(Oryza sativa)、辣椒(Capsicum annuum)等11种植物的MADS蛋白序列比对发现,AsMADS12与不同植物的MADS蛋白具有相同的特征保守结构域(图5)。构建AsMADS12与其他高同源性植物MADS蛋白的系统进化树,发现AsMADS12与甜橙的CsMADS和枳的CtMADS聚于同一分支(图6)。
激光共聚焦荧光显微镜分析结果(图7)显示,在对照组中,菌液浸染洋葱表皮后在细胞核、细胞壁中均出现了荧光,而在试验组中仅有细胞核部位出现绿色荧光,染色后细胞核的蓝色荧光重合表现为浅蓝绿色荧光。由此可见AsMADS12定位于细胞核,且该结果与WoLF PSORT软件预测结果相符。
为验证AsMADS12基因在白木香结香过程中的表达量变化,本研究用茉莉酸甲酯对白木香茎杆进行不同时间处理,并通过实时荧光定量PCR检测处理后的AsMADS12基因表达量,发现经茉莉酸甲酯处理后的AsMADS12基因表达量均有所提高,且在24 h的表达量最高(图8)。
白木香中的次生代谢产物主要以倍半萜和2-(2-苯乙基)色酮为主,是白木香胁迫响应的产物,也是沉香的主要化学成分[7, 22]。已有报道MAD-box家族基因在萜类的生物合成中也发挥重要作用,如LI等[23]通过对灵芝(Ganoderma lucidum)中GlMADS1的沉默引起灵芝酸的降低来证明该基因参与调控灵芝酸的合成;LU等[24]证明了柑橘(Citrus reticulata Blanco)中的CrMADS5可通过直接激活类胡萝卜素生成基因的转录来正向调控果实中的类胡萝卜素生物合成,此外,还发现CrMADS5可以与CrMADS6蛋白相互作用,并讨论了CrMADS5-CrMADS6在果实成熟和类胡萝卜素积累之间的作用。同样,在番茄(Solanum lycopersicum)中的研究表明,通过RNAi技术干扰表达SlCMB1基因后,可显著抑制类胡萝卜素合成关键基因PSY1PDS的表达水平,进而降低果实内类胡萝卜素的积累量[25]。本研究发现经茉莉酸甲酯处理后的白木香AsMADS12基因表达量明显上升且在24 h达到最高。有研究表明热休克处理诱导白木香悬浮细胞中茉莉酸(JA)合成相关基因的表达显著上调,伴随细胞内JA含量的增加,倍半萜的含量增加,说明内源JA信号在白木香倍半萜合成中发挥关键作用,可调控植物生长发育及其次级代谢产物的合成[26-27]。结合上述研究,推测AsMADS12可能通过响应茉莉酸信号,参与白木香的胁迫响应,对倍半萜或色酮等次生代谢产物的形成具有调控作用。
关于转录因子参与调控白木香次生代谢产物的合成已有报道。AsZFP9能直接结合激活倍半萜合成途径中的关键基因AsHMGR1AsTPS1的启动子,促进倍半萜的合成[28];AsMYC2通过茉莉酸信号通路控制ASS1表达且参与调控倍半萜生物合成,而AsWRKY44作为一个负调控因子抑制ASS1的表达[29-30]AsERF1能在干旱、盐等胁迫条件下被诱导表达并且能够激活AsTPS1的表达[31]。此外,AsPKS作为2-(2-苯乙基)色酮合成过程中的关键基因,转录因子AsNAC、AsbZIP、AsMYB均对AsPKS有不同的调控作用[32-34]。然而关于转录因子MADS-box家族基因在白木香次生代谢产物合成中的作用尚未报道,本研究首次对白木香中MADS-box家族基因进行分析,推断其响应茉莉酸甲酯的胁迫,并且参与白木香次生代谢产物的合成。这为将来探究该基因是否能够调控白木香的生物合成过程提供理论支撑,有助于解析沉香形成的机制,并为选育易结香的优质白木香品种奠定基础。然而,当前研究尚缺少充分的试验数据支撑,因此后续计划采用酵母单杂交技术、双荧光素酶报告基因检测等方法,深入验证该基因对白木香次生代谢生物合成的调控作用。
  • 国家自然科学基金项目(32171747; 32460415)
  • 海南省自然科学基金项目(323CXTD388)
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2025年第46卷第12期
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doi: 10.3969/j.issn.1000-2561.2025.12.005
  • 接收时间:2025-08-15
  • 首发时间:2026-06-24
  • 出版时间:2025-12-25
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  • 收稿日期:2025-08-15
  • 录用日期:2025-09-10
基金
国家自然科学基金项目(32171747; 32460415)
海南省自然科学基金项目(323CXTD388)
作者信息
    1.海南大学热带农林学院/热带特色林木花卉遗传与种质创新教育部重点实验室,海南儋州 571737
    2.中国热带农业科学院热带生物技术研究所/海南省黎药资源天然产物研究与利用重点实验室/沉香国际联合研究中心,海南海口 571101
    3.中国热带农业科学院三亚研究院,海南三亚 572000

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* 刘寿柏(LIU Shoubai),E-mail:
戴好富(DAI Haofu),E-mail:
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2种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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