Article(id=1276531562627863530, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276531538535781212, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2025.04.003, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1732550400000, receivedDateStr=2024-11-26, revisedDate=null, revisedDateStr=null, acceptedDate=1733328000000, acceptedDateStr=2024-12-05, onlineDate=1782278441339, onlineDateStr=2026-06-24, pubDate=1745510400000, pubDateStr=2025-04-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1782278441339, onlineIssueDateStr=2026-06-24, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1782278441339, creator=13701087609, updateTime=1782278441339, updator=13701087609, issue=Issue{id=1276531538535781212, tenantId=1146029695717560320, journalId=1235980609244409860, year='2025', volume='46', issue='4', pageStart='777', pageEnd='1024', issueExtLink='null', onlineDate='null', pubDate='1745510400000', pubDateStr='2025-04-25', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1782278435595, creator='13701087609', updateTime=1782278607615, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1276532260098675208, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276531538535781212, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1276532260098675209, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276531538535781212, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=798, endPage=806, ext={EN=ArticleExt(id=1276531562946630636, articleId=1276531562627863530, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Cloning and Expression Analysis of DenTFL1 Gene in Dendrobium Hybrid, columnId=1236256430337085821, journalTitle=Chinese Journal of Tropical Crops, columnName=Omics & Biotechnology, runingTitle=null, highlight=null, articleAbstract=

Gene TFL1 belongs to the phosphatidylethanolamine binding protein (PEBP) family and is closely related to plant flowering regulation. To explore the functions of TFL1 gene in Dendrobium hybrid, based on the transcriptome data of floral in Dendrobium hybrid, a TFL1 gene was cloned and named DenTFL1. And the bioinformatic analysis protein structure and subcellular localization prediction, expression patterns analysis were done to explored the functional of DenTFL1. The results showed that the full length of DenTFL1 cDNA sequence was 522 bp, encoding 173 amino acids. Bioinformatics analysis showed that the molecular formula of DenTFL1 was C870H1354N246O249S6, the theoretical relative molecular mass of the protein was 19.43 kDa, and the theoretical isoelectric point was 7.82, and the protein was hydrophilic and structurally stable. Subcellular prediction showed that it was located in the cytoplasm, without signal peptide and transmembrane domain. The secondary structure was dominated by 61.85% of random curl, also contained 23.70% of the extended chain, 14.45% of α-helix. The three-dimensional structural model was basically consistent with the secondary structure. The conserved domain analysis showed that DenTFL1 had a conserved PEBP domain and amino acid sequence alignment and phylogenetic tree analysis showed that DenTFL1 was closely related to D. nobile and D. thyrsiflorum. The constructed protein network showed that DenTFL1 mainly interacted with AT5G63440, LFY, SOC1, AGL24, AGL8. Expression analysis showed that DenTFL1 was expressed in all tissues of different development stages of Dendrobium hybrid, and had the highest expression level in the stems of young and mature plantlet and the flower stalks, and had a lower expression level in the roots of young plantlet and the leaves and roots of medium plantlets. Moreover, it had a high expression in different development stage of inflorescence except 3.0 cm long inflorescence. It also showed high expression in 7.0 mm and 9.0 mm width floral bud and the tissues of fully open flower, but expressed lower in the tissues of early development stages of floral bud. The research could provide a reference for the flowering regulation of Dendrobium hybrid, and add relevant information for the study of TFL1.

, authors=null, authorsList=Shunjin MO, Zhengqi LI, Xiaoyun YU, Shunjiao LU, Yi LIAO, Shuangshuang YI, authorCompany=null, correspAuthors=Shuangshuang YI, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1276531567493255171, articleId=1276531562627863530, tenantId=1146029695717560320, journalId=1235980609244409860, language=CN, title=秋石斛DenTFL1基因的克隆与表达分析, columnId=1236256430517440904, journalTitle=热带作物学报, columnName=组学与生物技术, runingTitle=null, highlight=null, articleAbstract=

TFL1基因属于磷脂酰乙醇胺结合蛋白(phosphatidylethanolamine-binding protein,PEBP)家族成员,与植物开花调控密切相关。为探究秋石斛中TFL1基因的功能,本研究基于花序发育转录组数据库克隆了1个秋石斛TFL1同源基因DenTFL1,并对其进行生物信息分析、蛋白结构和亚细胞定位预测以及表达模式的分析。结果表明:秋石斛DenTFL1基因cDNA全长522 bp,编码173个氨基酸;DenTFL1蛋白分子式为C870H1354N246O249S6,分子量为19.43 kDa,理论等电点(pI)为7.82,蛋白具有亲水性,结构稳定;DenTFL1蛋白不含有信号肽和跨膜结构域,预测该蛋白定位于细胞质,其二级结构以无规则卷曲为主,占比61.85%,还含有23.70%的延伸链,14.45%的α-螺旋,三维结构模型与二级结构基本一致。蛋白保守结构域分析结果显示,DenTFL1含有PEBP保守结构域。根据氨基酸序列比对和系统进化树分析发现,DenTFL1基因与金钗石斛、球花石斛中的同源基因亲缘关系较近且蛋白序列的一致性较高,进化较为保守。蛋白质互作网络预测结果显示,秋石斛DenTFL1蛋白主要与AT5G63440、LFY、SOC1、AGL24、AGL8等蛋白发生互作。实时定量PCR结果表明,DenTFL1基因在秋石斛不同生长发育阶段的各个组织部位均有表达,其中在幼苗和成熟株的茎以及花柄中的表达量最高,在幼苗的根以及中苗的叶片和根中的表达量则相对较低;在花序发育的不同阶段均有较高的表达量(除了长度为3.0 cm的花序之外),在发育后期的花苞和成熟花各轮花器官中高表达,而在发育早期的各轮花器官中的表达量相对较低。本研究为进一步揭示TFL1基因在秋石斛中花期调控提供一定的理论依据。

, authors=

莫顺金(1997—),女,硕士研究生,研究方向:花卉遗传育种。

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* 易双双(YI Shuangshuang),E-mail:
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莫顺金(1997—),女,硕士研究生,研究方向:花卉遗传育种。

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莫顺金(1997—),女,硕士研究生,研究方向:花卉遗传育种。

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A:不同发育阶段的花苞(1、3、5、7、9 mm);B:花器官。

, figureFileSmall=H1QYYKFDAlImyW7QM9T5xQ==, figureFileBig=hXObkhpGWVft1Y3J/myPtw==, tableContent=null), ArticleFig(id=1276531579103088704, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 2, caption=PCR amplification product of DenTFL1, figureFileSmall=aHWvjw9IfTFbb9OHplJt1Q==, figureFileBig=UXtydhZwGU7P0C+rFy6bnQ==, tableContent=null), ArticleFig(id=1276531579199557697, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图2, caption=DenTFL1基因的PCR扩增产物

M: DL2000 DNA marker.

, figureFileSmall=aHWvjw9IfTFbb9OHplJt1Q==, figureFileBig=UXtydhZwGU7P0C+rFy6bnQ==, tableContent=null), ArticleFig(id=1276531579442827330, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 3, caption=Hydrophilicity/hydrophobicity analysis of DenTFL1, figureFileSmall=LzB4yT50sPh1w/6VedDTLQ==, figureFileBig=aRP/yT5Vybjd6ZlFOGiS9g==, tableContent=null), ArticleFig(id=1276531579530907715, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图3, caption=DenTFL1蛋白亲疏水性分析, figureFileSmall=LzB4yT50sPh1w/6VedDTLQ==, figureFileBig=aRP/yT5Vybjd6ZlFOGiS9g==, tableContent=null), ArticleFig(id=1276531579610599492, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 4, caption=Structure prediction of DenTFL1, figureFileSmall=K3twqJCPThe3IothYjU1Xg==, figureFileBig=mnajdaIbXsbPUGKViwvuuQ==, tableContent=null), ArticleFig(id=1276531579673514053, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图4, caption=DenTFL1蛋白结构预测

A:二级结构预测,黄色、紫色、蓝色分别表示无规则卷曲、延伸链、α-螺旋;B:三级结构预测。

, figureFileSmall=K3twqJCPThe3IothYjU1Xg==, figureFileBig=mnajdaIbXsbPUGKViwvuuQ==, tableContent=null), ArticleFig(id=1276531579740622918, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 5, caption=Comparison on amino acide sequences of DenTFL1, figureFileSmall=gTyseaB43fYLq7D5H0+4fA==, figureFileBig=AHHLi7BLWi5ZmfiPW+Ostw==, tableContent=null), ArticleFig(id=1276531579820314695, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图5, caption=DenTFL1的氨基酸序列比对, figureFileSmall=gTyseaB43fYLq7D5H0+4fA==, figureFileBig=AHHLi7BLWi5ZmfiPW+Ostw==, tableContent=null), ArticleFig(id=1276531579883229256, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 6, caption=Phylogenetic tree of DenTFL1, figureFileSmall=6l6z3c2e7EzN9ZDBmVgeLg==, figureFileBig=pEz9gNxNcZ9WAu4ceXivjg==, tableContent=null), ArticleFig(id=1276531579946143817, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图6, caption=DenTFL1蛋白的系统进化树, figureFileSmall=6l6z3c2e7EzN9ZDBmVgeLg==, figureFileBig=pEz9gNxNcZ9WAu4ceXivjg==, tableContent=null), ArticleFig(id=1276531580101333066, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 7, caption=Interaction network analysis of DenTFL, figureFileSmall=4vP17ZoARj8t1oT4mJWeOA==, figureFileBig=kSL13HnOltPJXJiAhSELIQ==, tableContent=null), ArticleFig(id=1276531580181024843, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图7, caption=DenTFL蛋白互作网络预测, figureFileSmall=4vP17ZoARj8t1oT4mJWeOA==, figureFileBig=kSL13HnOltPJXJiAhSELIQ==, tableContent=null), ArticleFig(id=1276531580269105228, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 8, caption=Expression analysis of DenTFL1 in different organ at different development stages, figureFileSmall=/XbJqadwmCWT9pS/sTf5KA==, figureFileBig=1OQ9NFRQvjtDgiRW+jnBrA==, tableContent=null), ArticleFig(id=1276531580344602701, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图8, caption=DenTFL1基因在各发育阶段植株不同组织的表达分析, figureFileSmall=/XbJqadwmCWT9pS/sTf5KA==, figureFileBig=1OQ9NFRQvjtDgiRW+jnBrA==, tableContent=null), ArticleFig(id=1276531580407517262, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 9, caption=Expression analysis of DenTFL1 in floral and flower bud at different development stages, figureFileSmall=lzCyKC3SaonrR889TFoxsQ==, figureFileBig=h1U7hjuEVz/MJkJe2QTCnA==, tableContent=null), ArticleFig(id=1276531580478820431, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图9, caption=DenTFL1在不同发育阶段花苞与花序中的表达分析, figureFileSmall=lzCyKC3SaonrR889TFoxsQ==, figureFileBig=h1U7hjuEVz/MJkJe2QTCnA==, tableContent=null), ArticleFig(id=1276531580550123600, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 10, caption=Expression analysis of DenTFL1 in floral organs at different development stages, figureFileSmall=HuBPqOo1T+3o6562HNBD+w==, figureFileBig=oeUMkqash7I4dCnmgtoedg==, tableContent=null), ArticleFig(id=1276531580617232465, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图10, caption=DenTFL1在各发育阶段花器官中的表达分析, figureFileSmall=HuBPqOo1T+3o6562HNBD+w==, figureFileBig=oeUMkqash7I4dCnmgtoedg==, tableContent=null), ArticleFig(id=1276531580692729938, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Fig. 11, caption=Expression analysis of DenTFL1 within 48 hours in leaves, figureFileSmall=+q06pv5IjDLpDfBskfPIRQ==, figureFileBig=eYziyYwwSipgrhKk6mvZ3Q==, tableContent=null), ArticleFig(id=1276531580759838803, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=图11, caption=DenTFL1在叶片中48 h内的表达分析, figureFileSmall=+q06pv5IjDLpDfBskfPIRQ==, figureFileBig=eYziyYwwSipgrhKk6mvZ3Q==, tableContent=null), ArticleFig(id=1276531580826947668, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=EN, label=Tab. 1, caption=

Primer sequence

, figureFileSmall=null, figureFileBig=null, tableContent=
引物名称Primer name引物序列(5′–3′)Primer sequence (5′–3′)用途Function
DenTFL1-FATGGCCAGAGCAGTGGAGCCTCTT基因克隆
DenTFL1-RTTAACGTCTCCTAGACGCCGTCTC
q-DenTFL1-FGTGGAGCCTCTTGTTGTTGGqPCR
q-DenTFL1-RTCAGTGGTGCCTGGGATGT
β-Actin-FGTCAGGGACATCAAGGAGAAG
β-Actin-RTGGGCACCTAAATCTCTCAGC
), ArticleFig(id=1276531580889862229, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, language=CN, label=表1, caption=

引物序列

, figureFileSmall=null, figureFileBig=null, tableContent=
引物名称Primer name引物序列(5′–3′)Primer sequence (5′–3′)用途Function
DenTFL1-FATGGCCAGAGCAGTGGAGCCTCTT基因克隆
DenTFL1-RTTAACGTCTCCTAGACGCCGTCTC
q-DenTFL1-FGTGGAGCCTCTTGTTGTTGGqPCR
q-DenTFL1-RTCAGTGGTGCCTGGGATGT
β-Actin-FGTCAGGGACATCAAGGAGAAG
β-Actin-RTGGGCACCTAAATCTCTCAGC
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秋石斛DenTFL1基因的克隆与表达分析
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莫顺金 1, 2 , 李政锜 3 , 于晓云 1, 2 , 陆顺教 1, 2 , 廖易 1, 2 , 易双双 1, 2, *
热带作物学报 | 组学与生物技术 2025,46(4): 798-806
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热带作物学报 |组学与生物技术 2025 , 46 (4) : 798 -806
秋石斛DenTFL1基因的克隆与表达分析
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2.Hainan Engineering Technology Research Center of Tropical Ornamental Plant Germplasm Innovation and Utilization, Danzhou, Hainan 571737, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1276531570223747094, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276531562627863530, authorId=1276531568546025489, language=CN, stringName=莫顺金, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1.中国热带农业科学院热带作物品种资源研究所/农业农村部华南作物基因资源与种质创制重点开放实验室/海南省热带作物资源遗传改良与创新重点实验室,海南海口 571101
2.海南省热带观赏植物种质资源创新利用工程技术研究中心,海南儋州 571737, bio={"content":"

莫顺金(1997—),女,硕士研究生,研究方向:花卉遗传育种。

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莫顺金(1997—),女,硕士研究生,研究方向:花卉遗传育种。

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莫顺金1, 2, 李政锜3, 于晓云1, 2, 陆顺教1, 2, 廖易1, 2, 易双双1, 2, *
作者信息
  • 1.中国热带农业科学院热带作物品种资源研究所/农业农村部华南作物基因资源与种质创制重点开放实验室/海南省热带作物资源遗传改良与创新重点实验室,海南海口 571101
  • 2.海南省热带观赏植物种质资源创新利用工程技术研究中心,海南儋州 571737
  • 3.海南大学热带农林学院,海南儋州 571737
通讯作者:
* 易双双(YI Shuangshuang),E-mail:
Cloning and Expression Analysis of DenTFL1 Gene in Dendrobium Hybrid
Shunjin MO1, 2, Zhengqi LI3, Xiaoyun YU1, 2, Shunjiao LU1, 2, Yi LIAO1, 2, Shuangshuang YI1, 2, *
Affiliations
  • 1.Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences / Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture and Rural Affairs / Key Laboratory of Tropical Crops Germplasm Resources Genetic Improvement and Innovation of Hainan Province, Haikou, Hainan 571101, China
  • 2.Hainan Engineering Technology Research Center of Tropical Ornamental Plant Germplasm Innovation and Utilization, Danzhou, Hainan 571737, China
  • 3.School of Tropical Agriculture and Forestry, Hainan University, Danzhou, Hainan 571737, China
出版时间: 2025-04-25 doi: 10.3969/j.issn.1000-2561.2025.04.003
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TFL1基因属于磷脂酰乙醇胺结合蛋白(phosphatidylethanolamine-binding protein,PEBP)家族成员,与植物开花调控密切相关。为探究秋石斛中TFL1基因的功能,本研究基于花序发育转录组数据库克隆了1个秋石斛TFL1同源基因DenTFL1,并对其进行生物信息分析、蛋白结构和亚细胞定位预测以及表达模式的分析。结果表明:秋石斛DenTFL1基因cDNA全长522 bp,编码173个氨基酸;DenTFL1蛋白分子式为C870H1354N246O249S6,分子量为19.43 kDa,理论等电点(pI)为7.82,蛋白具有亲水性,结构稳定;DenTFL1蛋白不含有信号肽和跨膜结构域,预测该蛋白定位于细胞质,其二级结构以无规则卷曲为主,占比61.85%,还含有23.70%的延伸链,14.45%的α-螺旋,三维结构模型与二级结构基本一致。蛋白保守结构域分析结果显示,DenTFL1含有PEBP保守结构域。根据氨基酸序列比对和系统进化树分析发现,DenTFL1基因与金钗石斛、球花石斛中的同源基因亲缘关系较近且蛋白序列的一致性较高,进化较为保守。蛋白质互作网络预测结果显示,秋石斛DenTFL1蛋白主要与AT5G63440、LFY、SOC1、AGL24、AGL8等蛋白发生互作。实时定量PCR结果表明,DenTFL1基因在秋石斛不同生长发育阶段的各个组织部位均有表达,其中在幼苗和成熟株的茎以及花柄中的表达量最高,在幼苗的根以及中苗的叶片和根中的表达量则相对较低;在花序发育的不同阶段均有较高的表达量(除了长度为3.0 cm的花序之外),在发育后期的花苞和成熟花各轮花器官中高表达,而在发育早期的各轮花器官中的表达量相对较低。本研究为进一步揭示TFL1基因在秋石斛中花期调控提供一定的理论依据。

秋石斛  /  DenTFL1  /  基因克隆  /  表达分析

Gene TFL1 belongs to the phosphatidylethanolamine binding protein (PEBP) family and is closely related to plant flowering regulation. To explore the functions of TFL1 gene in Dendrobium hybrid, based on the transcriptome data of floral in Dendrobium hybrid, a TFL1 gene was cloned and named DenTFL1. And the bioinformatic analysis protein structure and subcellular localization prediction, expression patterns analysis were done to explored the functional of DenTFL1. The results showed that the full length of DenTFL1 cDNA sequence was 522 bp, encoding 173 amino acids. Bioinformatics analysis showed that the molecular formula of DenTFL1 was C870H1354N246O249S6, the theoretical relative molecular mass of the protein was 19.43 kDa, and the theoretical isoelectric point was 7.82, and the protein was hydrophilic and structurally stable. Subcellular prediction showed that it was located in the cytoplasm, without signal peptide and transmembrane domain. The secondary structure was dominated by 61.85% of random curl, also contained 23.70% of the extended chain, 14.45% of α-helix. The three-dimensional structural model was basically consistent with the secondary structure. The conserved domain analysis showed that DenTFL1 had a conserved PEBP domain and amino acid sequence alignment and phylogenetic tree analysis showed that DenTFL1 was closely related to D. nobile and D. thyrsiflorum. The constructed protein network showed that DenTFL1 mainly interacted with AT5G63440, LFY, SOC1, AGL24, AGL8. Expression analysis showed that DenTFL1 was expressed in all tissues of different development stages of Dendrobium hybrid, and had the highest expression level in the stems of young and mature plantlet and the flower stalks, and had a lower expression level in the roots of young plantlet and the leaves and roots of medium plantlets. Moreover, it had a high expression in different development stage of inflorescence except 3.0 cm long inflorescence. It also showed high expression in 7.0 mm and 9.0 mm width floral bud and the tissues of fully open flower, but expressed lower in the tissues of early development stages of floral bud. The research could provide a reference for the flowering regulation of Dendrobium hybrid, and add relevant information for the study of TFL1.

Dendrobium hybrid  /  DenTFL1  /  gene cloning  /  expression analysis
莫顺金, 李政锜, 于晓云, 陆顺教, 廖易, 易双双. 秋石斛DenTFL1基因的克隆与表达分析. 热带作物学报, 2025 , 46 (4) : 798 -806 . DOI: 10.3969/j.issn.1000-2561.2025.04.003
Shunjin MO, Zhengqi LI, Xiaoyun YU, Shunjiao LU, Yi LIAO, Shuangshuang YI. Cloning and Expression Analysis of DenTFL1 Gene in Dendrobium Hybrid[J]. Chinese Journal of Tropical Crops, 2025 , 46 (4) : 798 -806 . DOI: 10.3969/j.issn.1000-2561.2025.04.003
秋石斛,也被称为蝴蝶石斛,是兰科(Orchidaceae)石斛属多年生草本植物,具有重要观赏价值。海南处于热带地区,凭借其优越的气候及地理优势,是热带花卉的主产区,也是我国秋石斛的主要产地[1]。近年来,秋石斛的栽种面积逐年扩大,每年的秋石斛出货量也不断增多[2]。我国引入秋石斛栽植时间较晚,但是近年来秋石斛盆花生产发展速度快,具有很高的研究价值和商业前景。秋石斛花期集中在秋季,国内花卉消费呈现节日消费的特点,如在春节、情人节等节日前后市场需求较大,秋石斛自然花期和市场需求旺季不遇,导致花卉的商品价值大大降低,严重影响了秋石斛产业发展。使用植物生长调节剂可以诱导秋石斛提前开花[3],但是会造成花朵数量减少甚至畸形等不利影响[4]。作为观花植物,秋石斛的成花状况是影响产业发展中的关键因素,成花质量直接关系到秋石斛的观赏价值。随着分子生物学的发展,兰花在分子育种方面也进行了深入的研究[5],有效调控秋石斛花期使之能按需开花是目前秋石斛生产急需解决的关键问题之一。目前关于秋石斛开花相关基因研究较少,本研究对调控秋石斛花期相关的DenTFL1基因进行克隆和表达分析,以期为秋石斛花期调控提供有效的理论依据。
前人研究发现植物的开花途径主要有6种,即光周期途径(photoperiod pathway)、春化途径(vernalization pathway)、自主途径(autonomous pathway)、赤霉素途径(gibberellin pathway)、环境温度途径(ambient temperature pathway)和年龄途径(age pathway)[6]。各调控途径的不同通路在植物体内交汇后,共同作用将开花信号传递给一系列成花/抑花因子,如FLOWERING LOCUS TFT)和TERMINAL FLOWER 1TFL1[7],开花调节因子被激活后共同调控植物的花期[8]。这2个调节因子均属于PEBP(phosphatidylethanolamine-binding protein)家族成员[9]。尽管FT-like基因与TFL1-like基因在序列上展现出高度同源性,但二者却具有拮抗功能[10]。具体而言,FT-like基因对开花过程具有促进作用,而TFL1-like基因则起到抑制开花的作用[11]。在拟南芥中,FT蛋白与bZIP转录因子FD蛋白结合形成FT/FD蛋白复合物,诱导开花基因表达,促进拟南芥开花,而TFL1基因表达时,TFL1蛋白也可以与FD蛋白结合,但是TFL1/FD复合物产生开花抑制基因,从而抑制拟南芥的开花[12]。迄今为止,开花抑制因子TFL1同源基因被发现存在于番茄[13]、玉米[14]、龙胆[15]、菊花[16]、水仙[17]以及藏红花[18]等植物中。TFL1基因在秋石斛中的作用机理并不明确,本研究基于花序发育转录组数据库,克隆秋石斛开花关键基因DenTFL1,分析预测其蛋白结构和系统进化关系等,并通过实时定量PCR分析基因表达特性,为秋石斛开花调控提供有效的理论依据。
秋石斛三亚阳光(Dendrobium hybrid,Sonia Hiasakul)采自中国热带农业科学院热带作物品种资源研究所热带兰花资源圃(儋州)。分别采取幼苗期茎(YS)、幼苗期根(YR)、幼苗期叶(YF)、中苗期茎(MS)、中苗期根(MR)、中苗期叶(MF)、成熟期茎(MaS)、成熟期根(MaR)、成熟期叶(MaF)及成熟的花梗(Ped)、花柄(Sta)等部位,同时采集长度分别为1、3、5、7、9 cm的花序(1FB、3FB、5FB、5FB、9FB),直径分别为1、3、5、7、9 mm的花苞(1F、3F、5F、7F、9F),以及直径为3、5、7 mm花苞和完全开放花朵的萼片(3S、5S、7S、FS)、花瓣(3P、5P、7P、FP)、唇瓣(3L、5L、7L、FL)、合蕊柱(3C、5C、7C、FC)等花器官(图1)。选择生长状态一致的中苗,在48 h内每2 h采集中苗叶片。采样时设置3个重复,取样后立刻剪碎,用锡纸包裹后放入液氮中,于-80 ℃冰箱保存备用。所采样品用于RNA的提取、基因克隆及表达分析。
使用天根RNAprep Pure Plant Plus Kit试剂盒提取秋石斛RNA,将质量合格的RNA逆转录为cDNA,于–20 ℃冰箱保存备用。以三亚阳光秋石斛转录组中得到的DenTFL1基因序列为依据,使用Primer Premier 5软件设计引物(表1),用反转录的花苞cDNA作为模板进行PCR扩增。用胶回收试剂盒对目的片段进行回收,利用热激法将得到的胶回收产物与大肠杆菌感受态细胞DH5α连接,挑选单菌落进行菌液PCR检测,并挑选阳性菌测序。
利用ExPasy-ProtParam(https://www.expasy.org/resources/protparam)在线软件分析蛋白的理化性质;利用ExPASy-protscale预测分析蛋白的亲水性;利用WoLF PSORT(https://wolfpsort.hgc.jp/)和Cell ploc2.0(http://www.csbio.sjtu.edu.cn/bioinf/Cell-PLoc-2/)在线软件预测DenTFL1蛋白的亚细胞定位;利用SOPMA(https://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html)、SWISS-MODEL(https://swissmodel.expasy.org/interactive)在线软件预测蛋白的二级结构及三维空间结构;利用TMHMM-2.0(https://services.healthtech.dtu.dk/services/TMHMM-2.0/)在线软件预测蛋白跨膜区;利用SignalP-6.0(https://services.healthtech.dtu.dk/services/SignalP-6.0/)在线软件预测蛋白信号肽;通过NCBI数据库的BLAST工具获得DenTFL1蛋白的同源序列,并用DNAMAN软件进行比对分析,使用MEGA-11软件构建系统进化树。
以三亚阳光秋石斛的不同组织为材料分析秋石斛DenTFL1基因的组织表达特性。使用吐露港的2×Q3 SYBR qPCR Master mix试剂盒,CFX96 Touch仪器进行荧光定量PCR检测。实验设置3次生物学重复,DenTFL1基因的相对表达量使用2-∆∆Ct法计算。DenTFL1基因的荧光定量PCR引物见表1,使用秋石斛β-actin基因作为内参[19]。计算结果使用Origin 2024软件制图。
以秋石斛花苞cDNA为模板,设计特异性引物,PCR成功扩增出目的基因DenTFL1图2),经测序获得522 bp的序列。
理化性质分析结果显示,DenTFL1蛋白包含173个氨基酸,分子量为19.43 kDa,分子式简写为C870H1354N246O249S6,理论等电点(pI)为7.82;带正电荷的残基总数(Arg+Lys)为2个,带负电荷的残基总数(Asp+Glu)为20个;缬氨酸在氨基酸序列中占比最高(13.3%),其次为精氨酸(9.2%);蛋白不稳定系数达39.91,推测其为稳定碱性蛋白。总亲水性平均值(GRAVY)为-0.257,推测DenTFL 1蛋白属于亲水蛋白(图3)。保守结构域数据库(CDD)预测结果显示,DenTFL1蛋白属于PEBP超家族。SignalP 6.0预测结果显示,Sec/SPI为0.0004,其它类型蛋白占比为0.9996,表示DenTFL1蛋白可能不具有信号肽。TMHMM 2.0软件分析该蛋白质不含跨膜结构域,推测该蛋白属于非分泌性蛋白。使用WoLF PSORT和Cell-PLoc 2.0在线软件预测结果均表明DenTFL1蛋白可能定位于细胞质。
DenTFL1蛋白由3种构象组成,其中无规则卷曲(random coil)占比最高,为61.85%;其次是延伸链(extended strand),占比23.7%;α-螺旋(alpha helix)占比仅有14.45%(图4A)。使用SWISS-MODEL软件以匹配度最高的水稻PEBP家族Os02g0531600蛋白为模板建模,得到TFL1蛋白三级结构模型(图4B),与二级结构基本一致,DenTF1L蛋白三级结构中同样含有较多的无规则卷曲。
通过NCBI数据库查找其它植物中与DenTFL1蛋白同源的序列,并用DNAMAN软件对其进行同源性比对,发现DenTFL1序列与金钗石斛(KAI0496869.1)、球花石斛(KAL0910461.1)、Masdevallia wendlandiana(QLM02222.1)、文心兰(AIU44253.1)、香荚兰(KAG0489005.1)等物种同源基因的氨基酸序列高度相似,同源性分别为96.53%、94.80%、85.55%、87.86%、85.38%(图5),说明可能具有相似功能。系统进化树显示,秋石斛DenTFL1与金钗石斛的亲缘关系最近,其次是球花石斛,与高粱,油棕亲缘关系较远(图6)。
利用STRING软件对秋石斛DenTFL1进行蛋白质互作(protein-protein interaction,PPI)网络构建。DenTFL1氨基酸序列与拟南芥AtTFL1相似性较高,同源性为69.1%。借助AtTFL1已知的蛋白互作网络对DenTFL1的蛋白互作调控机制进行预测发现(图7),聚类系数为0.891,PPI富集P值为5.57e-05,可能与DenTFL1存在互相作用的蛋白有10个,分别是AT5G63440(0.963)、LFY(0.938)、SOC1(0.931)、AGL24(0.924)、AGL8(0.907)、CAL(0.905)、F6I1.13(0.888)、DECOY(0.875)、AT1G64880(0.866)、VIN3(0.852)。GO富集分析表明,DenTFL1的互作蛋白主要参与花序分生组织特性的维持,胚胎后发育的正向调控、花朵发育的正向调控等生物过程。
为探究DenTFL1基因在秋石斛中的表达特性,本研究对秋石斛不同发育阶段的不同组织、不同发育阶段的花序、花苞以及不同发育阶段花器官中的基因表达情况进行分析。不同发育阶段的不同组织表达特性分析结果表明,DenTFL1基因在秋石斛各发育阶段不同组织中均有表达,在幼苗和成熟苗的茎、花柄中高表达,其次是成熟株的根和幼苗的叶片,中苗的茎、根和叶中的表达量均较低(图8)。
花序和花苞的表达特性分析(图9)发现,DenTFL1在花序发育的各个阶段均有表达,在长度1 cm的花序中的表达量最高,之后表达量迅速下降,在长度3 cm的花序中的表达量最低,之后表达量又迅速上升,在长度5、7、9 cm的花序中均有较高的表达量。在各个发育阶段的花苞中,DenTFL1主要在花苞发育后期高表达,其中在7 mm直径的花苞中的表达量最高,其次是9 mm直径的花苞。
在花器官中,完全开放花朵的各个部位DenTFL1基因表达量明显高于3、5、7 mm花苞的花器官。在未成熟时,几个阶段花苞中萼片的基因表达量均较高,当花苞开放时,各个花器官中基因表达量上升,明显高于3、5、7 mm花苞,其中唇瓣的表达量最高(图10)。
为分析DenTFL1在48 h周期内表达变化,选取秋石斛中苗叶片部位进行表达分析。DenTFL1在叶片中的昼夜表达结果显示,DenTFL1在凌晨6:00—8:00时,中午12:00—16:00时,晚上18:00—22:00时的表达量呈先上调后下调的趋势(图11),具有明显的节律性。
成花转变是有花植物重要的生长阶段,最佳的开花时期对于植物在适宜环境条件下完成生命周期具有重要意义[20]。花是绝大多数观赏植物最重要的观赏部位,开花的早晚、开花的应节性等都极大地影响观花花卉的价值,而通过花期调控使观花花卉早开花、应节性开花是提高其价值的有效手段之一,对开花调控的分子机制解析是开展花期调控研究的基础。TFL1基因已被证实在调控植物的开花时间及植株结构中扮演重要角色[21]TFL1是花序分生组织发育的主要负调控因子,可显著延迟开花时间[22]。苹果中的MdTFL1-1MdTFL1-2在花诱导过程中表达迅速降低,在拟南芥中异位表达会延迟开花时间[23],矮牵牛中的PhTFL1a/c都导致拟南芥明显晚花[24];龙眼中的DlTFL1-1DlTFL1-2导致烟草和拟南芥开花延迟[25];在玫瑰中,开花抑制因子TFL1同源物的缺失会改变开花季节性,引起持续开花[26]。由此推测,本研究克隆的秋石斛DenTFL1基因在调控花期方面也有一定的作用。本研究从秋石斛三亚阳光品种中成功分离出DenTFL1基因,其全长为522 bp,编码173个氨基酸。通过蛋白序列对比研究发现,DenTFL1基因与金钗石斛(KAI049-6869.1)、球花石斛(KAL0910461.1)中的同源基因亲缘关系较近且蛋白序列的一致性较高,推测DenTFL1基因在这几个物种中的功能具有相似性。利用生物信息学技术分析DenTFL1蛋白的基本理化性质和二级结构等,推测其为稳定碱性亲水蛋白,且不具有信号肽和跨膜结构域,属于非分泌性蛋白。DenTFL1蛋白可能定位于细胞质,二级结构和三级结构预测结果显示DenTFL1蛋白有较多的无规则卷曲结构。
植物的开花受多种途径调控,最终整合成一个复杂的调控网络,其中包括许多开花抑制因子和开花促进因子。在植物幼苗时期,开花抑制因子高表达,抑制植物开花,到了中苗期,开花促进因子开始高表达,抑制开花抑制因子的表达,使开花抑制因子表达量降低,从而完成成花转换,最终开花[27]。而TFL1是一个开花抑制因子,秋石斛DenTFL1的时空发育表达特性分析表明,其在幼苗期的茎中具有很高的表达量,而到了中苗之后,表达量明显下降,与开花抑制因子在植物生长发育过程中的表达特性相一致。类似的表达特性在二球悬铃木(Platanus acerifolia[28]、巴西橡胶树(Hevea brasiliensis[29]、三花龙胆(Gentiana triflora[15]等植物中同样存在。表明秋石斛TFL1的同源基因DenTFL1同样具有抑制秋石斛开花的功能。
龙眼DlTFL1-1DlTFL1-2在拟南芥过表达中出现了花序分支增多的表型,并且转基因拟南芥中的AtAP1AtFTAtLFY基因表达量显著下调[25]TFL1及其同源基因除了具有调控开花的功能之外,在很多物种中也报道了其参与调控植物形态建成及花器官发育的功能,如与AGAMOUS基因功能互作调控紫花苜蓿的花器官分化和花序发育[30];与AGAMOUSLEAFY共同互作调控拟南芥花分生组织的分化[31],通过转录抑制调控拟南芥的开花时间和花序发育[12];与FT互作调控森林草莓(Fragaria vesca)花序形态建成[32]。蛋白互作网络的预测结果显示,DenTFL1蛋白与LFY、AGL24、AGL8等存在相互作用,并且GO富集分析表明这些互作蛋白主要参与花序分生组织特性的维持,花朵发育的正向调控等生物过程。本研究发现DenTFL1在花序、花苞发育的各个阶段以及花器官发育的各个阶段均有很高的表达量,表明DenTFL1极有可能也参与了秋石斛花序和花器官分化和发育的调控,但仍需通过进一步的研究验证。
研究表明,TFL1除了能感受年龄途径、自主途径以及春化途径的开花信号调控植物开花进程之外,也能感受光周期途径的开花信号调控开花进程[27],如森林草莓的FvTFL1突变将导致原本长日照抑制开花,短日照促进开花的植株在长日照条件下出现早花的表型[33],通过整合温度信号和光周期信号来抑制森林草莓的开花[34],通过感受温度和光周期信号调控黄瓜的有限生长发育[35]等。本研究中,DenTFL1昼夜节律表达特性分析发现,其具有很明显的昼夜表达规律,表明DenTFL1可以感受昼夜的光周期信号,从而诱导其表达量的变化,说明DenTFL1可以通过感受光周期的信号调控秋石斛的开花进程。
本研究克隆了秋石斛DenTFL1基因,对其进行生物信息学和表达特性分析,为全面深入解析DenTFL1生物学功能及作用机制提供参考,为后续深入解析其在秋石斛花期调控机制提供理论基础。
  • 海南省重大科技计划项目(ZDKJ2021015)
  • 海南省自然科学基金项目(322QN395)
  • 现代农业产业技术体系建设专项(CARS-23-G60)
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doi: 10.3969/j.issn.1000-2561.2025.04.003
  • 接收时间:2024-11-26
  • 首发时间:2026-06-24
  • 出版时间:2025-04-25
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  • 收稿日期:2024-11-26
  • 录用日期:2024-12-05
基金
海南省重大科技计划项目(ZDKJ2021015)
海南省自然科学基金项目(322QN395)
现代农业产业技术体系建设专项(CARS-23-G60)
作者信息
    1.中国热带农业科学院热带作物品种资源研究所/农业农村部华南作物基因资源与种质创制重点开放实验室/海南省热带作物资源遗传改良与创新重点实验室,海南海口 571101
    2.海南省热带观赏植物种质资源创新利用工程技术研究中心,海南儋州 571737
    3.海南大学热带农林学院,海南儋州 571737

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* 易双双(YI Shuangshuang),E-mail:
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2种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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