Article(id=1237814983862580082, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237814978405790425, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2025.10.002, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1748188800000, receivedDateStr=2025-05-26, revisedDate=null, revisedDateStr=null, acceptedDate=1748880000000, acceptedDateStr=2025-06-03, onlineDate=1773047689642, onlineDateStr=2026-03-09, pubDate=1761321600000, pubDateStr=2025-10-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1773047689642, onlineIssueDateStr=2026-03-09, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1773047689642, creator=13701087609, updateTime=1773047689642, updator=13701087609, issue=Issue{id=1237814978405790425, tenantId=1146029695717560320, journalId=1235980609244409860, year='2025', volume='46', issue='10', pageStart='2287', pageEnd='2547', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=1, specialIssue=null, createTime=1773047688342, creator=13701087609, updateTime=1773049212967, updator=13701087609, preIssue=null, nextIssue=null, ext={EN=IssueExt(id=1237821373213635442, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237814978405790425, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1237821373213635443, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237814978405790425, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null}, startPage=2299, endPage=2313, ext={EN=ArticleExt(id=1237814984131015560, articleId=1237814983862580082, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Genome-wide Identification, Expression Profiling and Network Analysis of AT-hook Gene Family in Cassava, columnId=1236256430337085821, journalTitle=Chinese Journal of Tropical Crops, columnName=Omics & Biotechnology, runingTitle=null, highlight=null, articleAbstract=

The AT-hook Motif Nuclear Localized (AHL) protein family is known for its pivotal roles in plant growth regulation, developmental patterning, and stress signal transduction. Although the gene family has been studied in various plant species, the genomic characteristics, evolutionary mechanism, and expression profiles of the AHL family in cassava (Manihot esculenta) remain unexplored. In this study, we comprehensively investigated the evolutionary features and biological response of the MeAHL gene family through genome-wide identification, phylogenetic analysis, structural characterization, and large-scale transcriptomes based on the cassava SC205 reference genome. We identified 41 putative members through genome-wide identification. Physicochemical property analysis showed that all 41 MeAHLs were hydrophilic proteins, and 40 of them were unstable proteins, with the number of amino acids generally ranging from 188 to 446 aa. Phylogenetic analysis indicated that the MeAHL family members could be divided into two clades, Clade A and Clade B. Two MeAHL gene clusters were located in the distal telomeric regions of chromosomes Chr01 and Chr02, respectively. Replication type analysis revealed that the evolution of MeAHLs was mainly driven by whole-genome duplication (WGD) and dispersed duplication (DSD), with the Ka/Ks values <1. Evolutionary mechanism analysis indicated that whole-genome duplication (WGD) primarily drove the MeAHL gene family expansion. Gene structure analysis showed that MeAHL genes were mainly composed of 1‒10 exons. Analysis of conserved domains and motifs showed that all MeAHLs had the PPC/DUF296 domain and AT-hook motif. Members of Clade A generally contained one Type-I AT-hook motif. Among members of Clade B, except for SC20508G13380 and SC20509G13950, which contained one Type-II AT-hook motif, most members contained two AT-hooks (Type-I and Type-II). Cis-acting element analysis via PlantCARE showed that the cis-acting elements related to light response were the most abundant in MeAHLs, such as Box 4, G-box, and they also contained elements responsive to hormones, biotic stresses, and abiotic stresses, such as ABRE, MBS, W-box, and TC-rich repeats. Tissue-specific expression profiling revealed distinct expression patterns between two clades of MeAHL across 11 different tissues. Stress transcriptome analysis demonstrated significant responses of specific MeAHLs to drought (ABA/PEG treatments), cassava bacterial blight (Xanthomonas axonopodis pv. manihotis), and mite infestation, showing clade-specific regulatory patterns. Protein-protein interaction (PPI) network prediction suggested some MeAHLs formed functional modules with bHLH, NAC, ARF, and NB-LRR proteins involved in plant development and stress responses. This study would provide the systematic characterization of AHL family evolution and functional diversification in cassava, offering theoretical foundations for molecular breeding applications.

, correspAuthors=Changmian JI, Wei HU, authorNote=null, correspAuthorsNote=
**JI Changmian,E-mail:;
HU Wei,E-mail:
, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=Yu WANG, Yunfei ZHENG, Haixu ZHAO, Meiying LI, Zhengnan XIE, Xiaoxue YE, Changmian JI, Wei HU), CN=ArticleExt(id=1237814987369017441, articleId=1237814983862580082, tenantId=1146029695717560320, journalId=1235980609244409860, language=CN, title=木薯AT-hook基序核定位基因家族的全基因组鉴定、表达谱及调控网络分析, columnId=1236256430517440904, journalTitle=热带作物学报, columnName=组学与生物技术, runingTitle=null, highlight=null, articleAbstract=

AT-Hook基序核定位(AT-hook Motif Nuclear Localized,AHL)蛋白作为植物中广泛存在的调控因子,在植物生长发育调控和逆境胁迫中发挥重要作用。尽管该基因家族在多个植物中已被研究,但木薯(Manihot esculenta)AHL家族的基因组学特征、进化机制及其表达调控模式仍未见报道。本研究基于木薯SC205的参考基因组,通过全基因组鉴定、系统进化分析、基因结构解析以及大规模转录组数据整合,系统揭示MeAHL家族的进化特征、基因表达模式和调控模块。研究共鉴定41个MeAHL基因,其中40个为不稳定蛋白,氨基酸数量介于188~446 aa之间。系统进化分析将其分为Clade A和Clade B两个分支,并在Chr01和Chr02染色体的远端粒区域发现2个MeAHL基因簇。进化机制分析表明全基因组复制(WGD)事件是驱动该家族扩张的主要进化动力。结构域分析显示MeAHL基因含有PPC/DUF296结构域和AT-hook基序:Clade A基因含有单个Type-I AT-hook基序,而Clade B基因多具有Type-I和Type-II双基序。启动子顺式作用元件分析揭示MeAHL基因启动子区富集光响应元件、植物激素响应元件以及生物/非生物胁迫响应元件,暗示其功能多样性。多组织转录组分析显示MeAHL两个分支在11种不同组织中呈现差异表达模式,暗示其亚家族功能分化。非生物/生物胁迫转录组分析表明,部分MeAHL对干旱(ABA/PEG处理)、木薯细菌性萎蔫病(Xanthomonas axonopodis pv. manihotis)和螨虫侵害等胁迫具有显著响应,且呈现分支特异性的表达模式。蛋白互作网络分析显示部分MeAHL可与bHLH、NAC、ARF、NB-LRR等参与发育调控和逆境响应相关的蛋白形成功能模块。本研究结果系统解析MeAHL基因家族进化特征与亚家族功能分化,及其响应不同生物学过程的基因表达模式和部分MeAHL的调控模块,为利用该家族基因进行木薯分子育种设计提供理论依据。

, correspAuthors=纪长绵, 胡伟, authorNote=null, correspAuthorsNote=
**纪长绵,E-mail:;
胡伟,E-mail:
, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=BXh7NEmZYZoRn48ui4xQkw==, magXml=s608DpJa3kbjLZlWLmcipA==, pdfUrl=null, pdf=GY70gyLVZ97vkXDRp9fVuQ==, pdfFileSize=2926873, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=MlivI1Fk2NuK7aFDOjWRRg==, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=TaQnc4ias3RQMf+oT7H4eQ==, mapNumber=null, authorCompany=null, fund=null, authors=

*同等贡献作者:郑芸霏(1999—),女,硕士研究生,研究方向:生物信息学。

王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种

, authorsList=王雨, 郑芸霏, 赵海旭, 李美英, 谢郑楠, 叶晓雪, 纪长绵, 胡伟)}, authors=[Author(id=1237831254909964985, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=0, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831254993851072, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831254909964985, language=EN, stringName=Yu WANG, firstName=Yu, middleName=null, lastName=WANG, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831255052571330, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831254909964985, language=CN, stringName=王雨, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio={"content":"

王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种

"}, bioImg=null, bioContent=

王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种

, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)])]), Author(id=1237831255136457417, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=1, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831255245509325, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255136457417, language=EN, stringName=Yunfei ZHENG, firstName=Yunfei, middleName=null, lastName=ZHENG, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 3, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
3. College of Agronomy, Henan Agricultural University, Zhengzhou, Henan 450046, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831255308423887, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255136457417, language=CN, stringName=郑芸霏, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 3, *, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
3.河南农业大学农学院,河南郑州 450046, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254733804206, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254742192814, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254733804206, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3. College of Agronomy, Henan Agricultural University, Zhengzhou, Henan 450046, China), AuthorCompanyExt(id=1237831254746387119, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254733804206, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3.河南农业大学农学院,河南郑州 450046)])]), Author(id=1237831255362949845, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=2, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831255421670105, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255362949845, language=EN, stringName=Haixu ZHAO, firstName=Haixu, middleName=null, lastName=ZHAO, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831255497167579, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255362949845, language=CN, stringName=赵海旭, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, address=1.中国热带农业科学院三亚研究院,海南三亚 572025, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)])]), Author(id=1237831255576859360, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=3, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831255660745446, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255576859360, language=EN, stringName=Meiying LI, firstName=Meiying, middleName=null, lastName=LI, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831257128751847, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255576859360, language=CN, stringName=李美英, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)])]), Author(id=1237831257271358186, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=4, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831257359438574, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257271358186, language=EN, stringName=Zhengnan XIE, firstName=Zhengnan, middleName=null, lastName=XIE, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831257422353137, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257271358186, language=CN, stringName=谢郑楠, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)])]), Author(id=1237831257489462003, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=5, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831257581736697, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257489462003, language=EN, stringName=Xiaoxue YE, firstName=Xiaoxue, middleName=null, lastName=YE, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831257648845562, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257489462003, language=CN, stringName=叶晓雪, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)])]), Author(id=1237831257736925949, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=6, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=jichangmian@itbb.org.cn, emailSecond=null, emailThird=null, correspondingAuthor=1, authorType=1, ext={EN=AuthorExt(id=1237831257845977858, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257736925949, language=EN, stringName=Changmian JI, firstName=Changmian, middleName=null, lastName=JI, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, **, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831257904698117, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257736925949, language=CN, stringName=纪长绵, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, **, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)])]), Author(id=1237831257971806985, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=7, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=huwei2013@itbb.org.cn, emailSecond=null, emailThird=null, correspondingAuthor=1, authorType=1, ext={EN=AuthorExt(id=1237831258051498767, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257971806985, language=EN, stringName=Wei HU, firstName=Wei, middleName=null, lastName=HU, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, 4, **, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
4. Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan 571339, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831258118607634, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257971806985, language=CN, stringName=胡伟, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=1, 2, 4, **, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101
4.中国热带农业科学院椰子研究所,海南文昌 571339, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)]), AuthorCompany(id=1237831254817690290, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254826078898, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254817690290, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=4. Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan 571339, China), AuthorCompanyExt(id=1237831254830273203, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254817690290, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=4.中国热带农业科学院椰子研究所,海南文昌 571339)])])], keywords=[Keyword(id=1237831258248631063, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, orderNo=1, keyword=cassava), Keyword(id=1237831258307351322, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, orderNo=2, keyword=AHL gene family), Keyword(id=1237831258366071580, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, orderNo=3, keyword=bioinformatics analysis), Keyword(id=1237831258437374750, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, orderNo=4, keyword=expression analysis), Keyword(id=1237831258663867169, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, orderNo=5, keyword=protein-protein interaction (PPI) network), Keyword(id=1237831258730976036, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, orderNo=1, keyword=木薯), Keyword(id=1237831258789696295, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, orderNo=2, keyword=AHL基因家族), Keyword(id=1237831258856805161, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, orderNo=3, keyword=生物信息学分析), Keyword(id=1237831258936496941, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, orderNo=4, keyword=表达分析), Keyword(id=1237831259016188717, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, orderNo=5, keyword=调控网络)], refs=[Reference(id=1237831263130801028, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2016, volume=34, issue=5, pageStart=562, pageEnd=570, url=null, language=null, rfNumber=[1], rfOrder=0, authorNames=BREDESON J V, LYONS J B, PROCHNIK S E, WU G A, HA C M, EDSINGERGONZALES E, GRIMWOOD J, SCHMUTZ J, RABBI I Y, EGESI C, journalName=Nature Biotechnology, refType=null, unstructuredReference=BREDESON J V, LYONS J B, PROCHNIK S E, WU G A, HA C M, EDSINGERGONZALES E, GRIMWOOD J, SCHMUTZ J, RABBI I Y, EGESI C. Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity[J]. Nature Biotechnology, 2016, 34(5): 562-570., articleTitle=Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity, refAbstract=null), Reference(id=1237831263210492805, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2002, volume=1, issue=4, pageStart=298, pageEnd=305, url=null, language=null, rfNumber=[2], rfOrder=1, authorNames=NASSAR N M, journalName=Genetics and Molecular Research, refType=null, unstructuredReference=NASSAR N M. Cassava, Manihot esculenta Crantz, genetic resources: origin of the crop, its evolution and relationships with wild relatives[J]. Genetics and Molecular Research, 2002, 1(4): 298-305., articleTitle=Cassava, Manihot esculenta Crantz, genetic resources: origin of the crop, its evolution and relationships with wild relatives, refAbstract=null), Reference(id=1237831263327933320, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2017, volume=9, issue=null, pageStart=907, pageEnd=927, url=null, language=null, rfNumber=[3], rfOrder=2, authorNames=PARMAR A, STURM B, HENSEL O, journalName=Food Security, refType=null, unstructuredReference=PARMAR A, STURM B, HENSEL O. Crops that feed the world: production and improvement of cassava for food, feed, and industrial uses[J]. Food Security, 2017, 9: 907-927., articleTitle=Crops that feed the world: production and improvement of cassava for food, feed, and industrial uses, refAbstract=null), Reference(id=1237831263424402316, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2015, volume=47, issue=null, pageStart=60, pageEnd=88, url=null, language=null, rfNumber=[4], rfOrder=3, authorNames=BAEYENS J, KANG Q, APPELS L, DEWIL R, LV Y Q, TAN T W, journalName=Progress in Energy and Combustion Science, refType=null, unstructuredReference=BAEYENS J, KANG Q, APPELS L, DEWIL R, LV Y Q, TAN T W. Challenges and opportunities in improving the production of bio-ethanol[J]. Progress in Energy and Combustion Science, 2015, 47: 60-88., articleTitle=Challenges and opportunities in improving the production of bio-ethanol, refAbstract=null), Reference(id=1237831263541842830, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2015, volume=31, issue=4, pageStart=65, pageEnd=71, url=null, language=null, rfNumber=[5], rfOrder=4, authorNames=张鹏, journalName=生物技术通报, refType=null, unstructuredReference=张鹏. 我国薯类基础研究的动态与展望[J]. 生物技术通报, 2015, 31(4): 65-71., articleTitle=我国薯类基础研究的动态与展望, refAbstract=null), Reference(id=1237831263621534607, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2015, volume=31, issue=4, pageStart=65, pageEnd=71, url=null, language=null, rfNumber=[5], rfOrder=5, authorNames=ZHANG P, journalName=Biotechnology Bulletin, refType=null, unstructuredReference=ZHANG P. Dynamics and prospects of basic research on tubers in China[J]. Biotechnology Bulletin, 2015, 31(4): 65-71. (in Chinese), articleTitle=Dynamics and prospects of basic research on tubers in China, refAbstract=null), Reference(id=1237831263684449169, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2022, volume=305, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[6], rfOrder=6, authorNames=DEVI B, KUMAR M N, CHUTIA M, BHATTACHARYYA N, journalName=Scientia Horticulturae, refType=null, unstructuredReference=DEVI B, KUMAR M N, CHUTIA M, BHATTACHARYYA N. Abiotic and biotic stress challenges of cassava in changing climate and strategies to overcome: a review[J]. Scientia Horticulturae, 2022, 305: 111432., articleTitle=Abiotic and biotic stress challenges of cassava in changing climate and strategies to overcome: a review, refAbstract=null), Reference(id=1237831263759946644, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2025, volume=60, issue=3, pageStart=377, pageEnd=392, url=null, language=null, rfNumber=[7], rfOrder=7, authorNames=杨莉, 曲茜彤, 陈子航, 邹婷婷, 王全华, 王小丽, journalName=植物学报, refType=null, unstructuredReference=杨莉, 曲茜彤, 陈子航, 邹婷婷, 王全华, 王小丽. 菠菜AT-hook基因家族鉴定与水杨酸响应表达谱分析[J]. 植物学报, 2025, 60(3): 377-392., articleTitle=菠菜AT-hook基因家族鉴定与水杨酸响应表达谱分析, refAbstract=null), Reference(id=1237831263864804247, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2025, volume=60, issue=3, pageStart=377, pageEnd=392, url=null, language=null, rfNumber=[7], rfOrder=8, authorNames=YANG L, QU X T, CHEN Z H, ZOU T T, WANG Q H, WANG X L, journalName=Acta Botanica Sinica, refType=null, unstructuredReference=YANG L, QU X T, CHEN Z H, ZOU T T, WANG Q H, WANG X L. Identification of the AT-hook gene family and analysis of salicylic acid - responsive expression profiles in spinach[J]. Acta Botanica Sinica, 2025, 60(3): 377-392. (in Chinese), articleTitle=Identification of the AT-hook gene family and analysis of salicylic acid - responsive expression profiles in spinach, refAbstract=null), Reference(id=1237831263961273241, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2013, volume=110, issue=48, pageStart=E4688, pageEnd=E4697, url=null, language=null, rfNumber=[8], rfOrder=9, authorNames=ZHAO J F, FAVERO D S, PENG H, NEFF M M, journalName=Proceedings of the National Academy of Sciences, refType=null, unstructuredReference=ZHAO J F, FAVERO D S, PENG H, NEFF M M. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain[J]. Proceedings of the National Academy of Sciences, 2013, 110(48): E4688-E4697., articleTitle=Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain, refAbstract=null), Reference(id=1237831264045159324, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2014, volume=14, issue=null, pageStart=1, pageEnd=19, url=null, language=null, rfNumber=[9], rfOrder=10, authorNames=ZHAO J F, FAVERO D S, QIU J W, ROALSON E H, NEFF M M, journalName=BMC Plant Biology, refType=null, unstructuredReference=ZHAO J F, FAVERO D S, QIU J W, ROALSON E H, NEFF M M. Insights into the evolution and diversification of the AT-hook motif nuclear localized gene family in land plants[J]. BMC Plant Biology, 2014, 14: 1-19., articleTitle=Insights into the evolution and diversification of the AT-hook motif nuclear localized gene family in land plants, refAbstract=null), Reference(id=1237831264116462493, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=30, issue=8, pageStart=1454, pageEnd=1466, url=null, language=null, rfNumber=[10], rfOrder=11, authorNames=FAVERO D S, KAWAMURA A, SHIBATA M, TAKEBAYASHI A, JUNG J H, SUZUKI T, JAEGER K E, ISHIDA T, IWASE A, WIGGE P A, NEFF M M, SUGIMOTO K, journalName=Current Biology, refType=null, unstructuredReference=FAVERO D S, KAWAMURA A, SHIBATA M, TAKEBAYASHI A, JUNG J H, SUZUKI T, JAEGER K E, ISHIDA T, IWASE A, WIGGE P A, NEFF M M, SUGIMOTO K. AT-Hook transcription factors restrict petiole growth by antagonizing PIFs[J]. Current Biology, 2020, 30(8): 1454-1466., articleTitle=AT-Hook transcription factors restrict petiole growth by antagonizing PIFs, refAbstract=null), Reference(id=1237831264179377055, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=21, issue=5, pageStart=1886, pageEnd=null, url=null, language=null, rfNumber=[11], rfOrder=12, authorNames=ŠIRL M, ŠNAJDROVÁ T, GUTIÉRREZ-ALANÍS D, DUBROVSKY J G, VIELLE-CALZADA J P, KULICH I, SOUKUP A, journalName=International Journal of Molecular Sciences, refType=null, unstructuredReference=ŠIRL M, ŠNAJDROVÁ T, GUTIÉRREZ-ALANÍS D, DUBROVSKY J G, VIELLE-CALZADA J P, KULICH I, SOUKUP A. At-Hook motif nuclear localised protein 18 as a novel modulator of root system architecture[J]. International Journal of Molecular Sciences, 2020, 21(5): 1886., articleTitle=At-Hook motif nuclear localised protein 18 as a novel modulator of root system architecture, refAbstract=null), Reference(id=1237831264238097313, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2009, volume=71, issue=1/2, pageStart=39, pageEnd=50, url=null, language=null, rfNumber=[12], rfOrder=13, authorNames=XIAO C W, CHEN F L, YU X H, LIN C T, FU Y F, journalName=Plant Molecular Biology, refType=null, unstructuredReference=XIAO C W, CHEN F L, YU X H, LIN C T, FU Y F. Overexpression of an AT-hook gene, AHL22, delays flowering and inhibits the elongation of the hypocotyl in Arabidopsis thaliana[J]. Plant Molecular Biology, 2009, 71(1/2): 39-50., articleTitle=Overexpression of an AT-hook gene, AHL22, delays flowering and inhibits the elongation of the hypocotyl in Arabidopsis thaliana, refAbstract=null), Reference(id=1237831264305206179, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2022, volume=22, issue=1, pageStart=1, pageEnd=19, url=null, language=null, rfNumber=[13], rfOrder=14, authorNames=JACQUES C N, FAVERO D S, KAWAMURA A, SUZUKI T, SUGIMOTO K, NEFF M M, journalName=BMC Plant Biology, refType=null, unstructuredReference=JACQUES C N, FAVERO D S, KAWAMURA A, SUZUKI T, SUGIMOTO K, NEFF M M. SUPPRESSOR OF PHYTOCHROME B-4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days[J]. BMC Plant Biology, 2022, 22(1): 1-19., articleTitle=SUPPRESSOR OF PHYTOCHROME B-4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days, refAbstract=null), Reference(id=1237831264389092262, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2013, volume=25, issue=1, pageStart=187, pageEnd=201, url=null, language=null, rfNumber=[14], rfOrder=15, authorNames=ZHOU J, WANG X, LEE J Y, LEE J Y, journalName=The Plant Cell, refType=null, unstructuredReference=ZHOU J, WANG X, LEE J Y, LEE J Y. Cell-to-cell movement of two interacting AT-hook factors in Arabidopsis root vascular tissue patterning[J]. The Plant Cell, 2013, 25(1): 187-201., articleTitle=Cell-to-cell movement of two interacting AT-hook factors in Arabidopsis root vascular tissue patterning, refAbstract=null), Reference(id=1237831264493949865, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2012, volume=287, issue=19, pageStart=15307, pageEnd=15316, url=null, language=null, rfNumber=[15], rfOrder=16, authorNames=YUN J, KIM Y S, JUNG J H, SEO P J, PARK C M, journalName=The Journal of Biological Chemistry, refType=null, unstructuredReference=YUN J, KIM Y S, JUNG J H, SEO P J, PARK C M. The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis[J]. The Journal of Biological Chemistry, 2012, 287(19): 15307-15316., articleTitle=The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis, refAbstract=null), Reference(id=1237831264586224555, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=20, issue=1, pageStart=559, pageEnd=null, url=null, language=null, rfNumber=[16], rfOrder=17, authorNames=TAYENGWA R, SHARMA KOIRALA P S, PIERCE C F, WERNER B E, NEFF M M, journalName=BMC Plant Biology, refType=null, unstructuredReference=TAYENGWA R, SHARMA KOIRALA P S, PIERCE C F, WERNER B E, NEFF M M. Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression[J]. BMC Plant Biology, 2020, 20(1): 559., articleTitle=Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression, refAbstract=null), Reference(id=1237831264644944813, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2022, volume=22, issue=1, pageStart=248, pageEnd=null, url=null, language=null, rfNumber=[17], rfOrder=18, authorNames=ZHOU Y S, ZHANG X M, CHEN J, GUO X P, WANG H Y, ZHEN W B, ZHANG J L, HU Z B, ZHANG X B, BOTELLA J R, ITO T, GUO S, journalName=BMC Plant Biology, refType=null, unstructuredReference=ZHOU Y S, ZHANG X M, CHEN J, GUO X P, WANG H Y, ZHEN W B, ZHANG J L, HU Z B, ZHANG X B, BOTELLA J R, ITO T, GUO S. Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana[J]. BMC Plant Biology, 2022, 22(1): 248., articleTitle=Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana, refAbstract=null), Reference(id=1237831266104562606, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=13, issue=7, pageStart=984, pageEnd=1000, url=null, language=null, rfNumber=[18], rfOrder=19, authorNames=CAI G Q, KIM S C, LI J W, ZHOU Y M, WANG X M, journalName=Molecular Plant, refType=null, unstructuredReference=CAI G Q, KIM S C, LI J W, ZHOU Y M, WANG X M. Transcriptional regulation of lipid catabolism during seedling establishment[J]. Molecular Plant, 2020, 13(7): 984-1000., articleTitle=Transcriptional regulation of lipid catabolism during seedling establishment, refAbstract=null), Reference(id=1237831266196837295, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=6, issue=null, pageStart=351, pageEnd=361, url=null, language=null, rfNumber=[19], rfOrder=20, authorNames=JEONG H N, SUN H J, ZUO Z F, LEE D H, LEE H Y, journalName=Plant Biotechnology Reports, refType=null, unstructuredReference=JEONG H N, SUN H J, ZUO Z F, LEE D H, LEE H Y. Overexpression of ATHG1/AHL23 and ATPG3/AHL20, Arabidopsis AT-hook motif nuclear-localized genes, confers salt tolerance in transgenic Zoysia japonica[J]. Plant Biotechnology Reports, 2020, 6: 351-361., articleTitle=Overexpression of ATHG1/AHL23 and ATPG3/AHL20, Arabidopsis AT-hook motif nuclear-localized genes, confers salt tolerance in transgenic Zoysia japonica, refAbstract=null), Reference(id=1237831266284917680, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2016, volume=6, issue=null, pageStart=30264, pageEnd=null, url=null, language=null, rfNumber=[20], rfOrder=21, authorNames=ZHOU L G, LIU Z C, LIU Y H, KONG D Y, LI T F, YU S W, MEI H W, XU X Y, LIU H Y, CHEN L, LUO L J, journalName=Scientific Reports, refType=null, unstructuredReference=ZHOU L G, LIU Z C, LIU Y H, KONG D Y, LI T F, YU S W, MEI H W, XU X Y, LIU H Y, CHEN L, LUO L J. A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice[J]. Scientific Reports, 2016, 6: 30264., articleTitle=A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice, refAbstract=null), Reference(id=1237831266381386675, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2022, volume=208, issue=null, pageStart=509, pageEnd=519, url=null, language=null, rfNumber=[21], rfOrder=22, authorNames=LI Y, JIANG L, MO W, WANG L H, ZHANG L, CAO Y P, journalName=International Journal of Biological Macromolecules, refType=null, unstructuredReference=LI Y, JIANG L, MO W, WANG L H, ZHANG L, CAO Y P. AHLs' life in plants: especially their potential roles in responding to Fusarium wilt and repressing the seed oil accumulation[J]. International Journal of Biological Macromolecules, 2022, 208: 509-519., articleTitle=AHLs' life in plants: especially their potential roles in responding to Fusarium wilt and repressing the seed oil accumulation, refAbstract=null), Reference(id=1237831266444301235, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2022, volume=214, issue=null, pageStart=290, pageEnd=300, url=null, language=null, rfNumber=[22], rfOrder=23, authorNames=ZHANG W M, CHENG X Z, FANG D, CAO J, journalName=International Journal of Biological Macromolecules, refType=null, unstructuredReference=ZHANG W M, CHENG X Z, FANG D, CAO J. AT-HOOK MOTIF NUCLEAR LOCALIZED (AHL) proteins of ancient origin radiate new functions[J]. International Journal of Biological Macromolecules, 2022, 214: 290-300., articleTitle=AT-HOOK MOTIF NUCLEAR LOCALIZED (AHL) proteins of ancient origin radiate new functions, refAbstract=null), Reference(id=1237831266519798709, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2023, volume=13, issue=7, pageStart=248, pageEnd=null, url=null, language=null, rfNumber=[23], rfOrder=24, authorNames=KUMAR A, SINGH S, MISHRA A, journalName=3 Biotech, refType=null, unstructuredReference=KUMAR A, SINGH S, MISHRA A. Genome-wide identification and analyses of the AHL gene family in rice (Oryza sativa)[J]. 3 Biotech, 2023, 13(7): 248., articleTitle=Genome-wide identification and analyses of the AHL gene family in rice (Oryza sativa), refAbstract=null), Reference(id=1237831266586907575, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2023, volume=202, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[24], rfOrder=25, authorNames=WANG L Y, LI T T, LIU N, LIU X C, journalName=Plant Physiology and Biochemistry, refType=null, unstructuredReference=WANG L Y, LI T T, LIU N, LIU X C. Identification of tomato AHL gene families and functional analysis their roles in fruit development and abiotic stress response[J]. Plant Physiology and Biochemistry, 2023, 202: 107931., articleTitle=Identification of tomato AHL gene families and functional analysis their roles in fruit development and abiotic stress response, refAbstract=null), Reference(id=1237831266666599353, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2021, volume=22, issue=1, pageStart=361, pageEnd=null, url=null, language=null, rfNumber=[25], rfOrder=26, authorNames=WANG M, CHEN B W, ZHOU W, XIE L N, WANG L S, ZHANG Y L, ZHANG Q Z, journalName=BMC Genomics, refType=null, unstructuredReference=WANG M, CHEN B W, ZHOU W, XIE L N, WANG L S, ZHANG Y L, ZHANG Q Z. Genome-wide identification and expression analysis of the AT-hook motif nuclear localized gene family in soybean[J]. BMC Genomics, 2021, 22(1): 361., articleTitle=Genome-wide identification and expression analysis of the AT-hook motif nuclear localized gene family in soybean, refAbstract=null), Reference(id=1237831266725319611, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=21, issue=1, pageStart=69, pageEnd=null, url=null, language=null, rfNumber=[26], rfOrder=27, authorNames=ZHAO L J, YOUJUN L, CHEN W, YAO J B, LI Y, journalName=BMC Genomics, refType=null, unstructuredReference=ZHAO L J, YOUJUN L, CHEN W, YAO J B, LI Y. Genome-wide identification and analyses of the AHL gene family in cotton (Gossypium)[J]. BMC Genomics, 2020, 21(1): 69., articleTitle=Genome-wide identification and analyses of the AHL gene family in cotton (Gossypium), refAbstract=null), Reference(id=1237831266788234173, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2023, volume=24, issue=8, pageStart=7244, pageEnd=null, url=null, language=null, rfNumber=[27], rfOrder=28, authorNames=JIA P, LIU J L, YAN R, YANG K Y, DONG Q, LUAN H, ZHANG X M, LI H, GUO S, QI G, journalName=International Journal of Molecular Sciences, refType=null, unstructuredReference=JIA P, LIU J L, YAN R, YANG K Y, DONG Q, LUAN H, ZHANG X M, LI H, GUO S, QI G. Systematical characterization of the AT-Hook gene family in Juglans regia L. and the functional analysis of the JrAHL2 in Flower induction and hypocotyl elongation[J]. International Journal of Molecular Sciences, 2023, 24(8): 7244., articleTitle=Systematical characterization of the AT-Hook gene family in Juglans regia L. and the functional analysis of the JrAHL2 in Flower induction and hypocotyl elongation, refAbstract=null), Reference(id=1237831267023115198, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2021, volume=9, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[28], rfOrder=29, authorNames=WANG H Z, LENG X, YANG J, ZHANG M Q, ZENG M Z, XU X M, WANG F D, LI C H, journalName=PeerJ, refType=null, unstructuredReference=WANG H Z, LENG X, YANG J, ZHANG M Q, ZENG M Z, XU X M, WANG F D, LI C H. Comprehensive analysis of AHL gene family and their expression under drought stress and ABA treatment in Populus trichocarpa[J]. PeerJ, 2021, 9: e10932., articleTitle=Comprehensive analysis of AHL gene family and their expression under drought stress and ABA treatment in Populus trichocarpa, refAbstract=null), Reference(id=1237831267086029759, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2021, volume=12, issue=5, pageStart=764, pageEnd=null, url=null, language=null, rfNumber=[29], rfOrder=30, authorNames=MACHAJ G, GRZEBELUS D, journalName=Genes, refType=null, unstructuredReference=MACHAJ G, GRZEBELUS D. Characteristics of the AT-Hook motif containing nuclear localized (AHL) genes in carrot provides insight into their role in plant growth and storage root development[J]. Genes, 2021, 12(5): 764., articleTitle=Characteristics of the AT-Hook motif containing nuclear localized (AHL) genes in carrot provides insight into their role in plant growth and storage root development, refAbstract=null), Reference(id=1237831267169915840, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2021, volume=22, issue=1, pageStart=1, pageEnd=23, url=null, language=null, rfNumber=[30], rfOrder=31, authorNames=HU W, JI C M, LIANG Z, YE J Q, OU W J, DING Z H, ZHOU G, TIE W W, YAN Y, YANG J H, journalName=Genome Biology, refType=null, unstructuredReference=HU W, JI C M, LIANG Z, YE J Q, OU W J, DING Z H, ZHOU G, TIE W W, YAN Y, YANG J H. Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity[J]. Genome Biology, 2021, 22(1): 1-23., articleTitle=Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity, refAbstract=null), Reference(id=1237831267241219010, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2024, volume=25, issue=14, pageStart=7714, pageEnd=null, url=null, language=null, rfNumber=[31], rfOrder=32, authorNames=WANG X T, TANG X N, ZHANG Y W, GUO Y Q, YAO Y, LI R M, WANG Y J, LIU J, GUO J C, journalName=International Journal of Molecular Sciences, refType=null, unstructuredReference=WANG X T, TANG X N, ZHANG Y W, GUO Y Q, YAO Y, LI R M, WANG Y J, LIU J, GUO J C. Promoter of cassava MeAHL31 responds to diverse abiotic stresses and hormone signals in transgenic Arabidopsis[J]. International Journal of Molecular Sciences, 2024, 25(14): 7714., articleTitle=Promoter of cassava MeAHL31 responds to diverse abiotic stresses and hormone signals in transgenic Arabidopsis, refAbstract=null), Reference(id=1237831267320910788, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2020, volume=13, issue=8, pageStart=1194, pageEnd=1202, url=null, language=null, rfNumber=[32], rfOrder=33, authorNames=CHEN C J, CHEN H, ZHANG Y, THOMAS H R, FRANK M H, HE Y H, XIA R, journalName=Molecular Plant, refType=null, unstructuredReference=CHEN C J, CHEN H, ZHANG Y, THOMAS H R, FRANK M H, HE Y H, XIA R. TBtools: an integrative toolkit developed for interactive analyses of big biological data[J]. Molecular Plant, 2020, 13(8): 1194-1202., articleTitle=TBtools: an integrative toolkit developed for interactive analyses of big biological data, refAbstract=null), Reference(id=1237831267396408262, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2019, volume=20, issue=1, pageStart=38, pageEnd=null, url=null, language=null, rfNumber=[33], rfOrder=34, authorNames=QIAO X, LI Q H, YIN H, QI K J, LI L T, WANG R Z, ZHANG S L, PATERSON A H, journalName=Genome Biology, refType=null, unstructuredReference=QIAO X, LI Q H, YIN H, QI K J, LI L T, WANG R Z, ZHANG S L, PATERSON A H. Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants[J]. Genome Biology, 2019, 20(1): 38., articleTitle=Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants, refAbstract=null), Reference(id=1237831267476100040, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2009, volume=37, issue=suppl. 2, pageStart=W202, pageEnd=W208, url=null, language=null, rfNumber=[34], rfOrder=35, authorNames=BAILEY T L, BODEN M, BUSKE F A, FRITH M, GRANT C E, CLEMENTI L, REN J, LI W W, NOBLE W S, journalName=Nucleic Acids Research, refType=null, unstructuredReference=BAILEY T L, BODEN M, BUSKE F A, FRITH M, GRANT C E, CLEMENTI L, REN J, LI W W, NOBLE W S. MEME SUITE: tools for motif discovery and searching[J]. Nucleic Acids Research, 2009, 37(suppl. 2): W202-W208., articleTitle=MEME SUITE: tools for motif discovery and searching, refAbstract=null), Reference(id=1237831267564180426, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2018, volume=34, issue=17, pageStart=i884, pageEnd=i890, url=null, language=null, rfNumber=[35], rfOrder=36, authorNames=CHEN S F, ZHOU Y Q, CHEN Y R, GU J, journalName=Bioinformatics, refType=null, unstructuredReference=CHEN S F, ZHOU Y Q, CHEN Y R, GU J. fastp: an ultrafast all-in-one FASTQ preprocessor[J]. Bioinformatics, 2018, 34(17): i884-i890., articleTitle=fastp: an ultrafast all-in-one FASTQ preprocessor, refAbstract=null), Reference(id=1237831267727758283, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2019, volume=37, issue=8, pageStart=907, pageEnd=915, url=null, language=null, rfNumber=[36], rfOrder=37, authorNames=KIM D, PAGGI J M, PARK C, BENNETT C, SALZBERG S L, journalName=Nature Biotechnology, refType=null, unstructuredReference=KIM D, PAGGI J M, PARK C, BENNETT C, SALZBERG S L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype[J]. Nature Biotechnology, 2019, 37(8): 907-915., articleTitle=Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype, refAbstract=null), Reference(id=1237831267803255756, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2016, volume=11, issue=9, pageStart=1650, pageEnd=1667, url=null, language=null, rfNumber=[37], rfOrder=38, authorNames=PERTEA M, KIM D, PERTEA G M, LEEK J T, SALZBERG S L, journalName=Nature Protocols, refType=null, unstructuredReference=PERTEA M, KIM D, PERTEA G M, LEEK J T, SALZBERG S L. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown[J]. Nature Protocols, 2016, 11(9): 1650-1667., articleTitle=Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown, refAbstract=null), Reference(id=1237831267882947533, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2014, volume=15, issue=12, pageStart=550, pageEnd=null, url=null, language=null, rfNumber=[38], rfOrder=39, authorNames=LOVE M I, HUBER W, ANDERS S, journalName=Genome Biology, refType=null, unstructuredReference=LOVE M I, HUBER W, ANDERS S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2[J]. Genome Biology, 2014, 15(12): 550., articleTitle=Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2, refAbstract=null), Reference(id=1237831267966833614, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2003, volume=13, issue=11, pageStart=2498, pageEnd=2504, url=null, language=null, rfNumber=[39], rfOrder=40, authorNames=SHANNON P, MARKIEL A, OZIER O, BALIGA N S, WANG J T, RAMAGE D, AMIN N, SCHWIKOWSKI B, IDEKER T, journalName=Genome Research, refType=null, unstructuredReference=SHANNON P, MARKIEL A, OZIER O, BALIGA N S, WANG J T, RAMAGE D, AMIN N, SCHWIKOWSKI B, IDEKER T. Cytoscape: a software environment for integrated models of biomolecular interaction networks[J]. Genome Research, 2003, 13(11): 2498-2504., articleTitle=Cytoscape: a software environment for integrated models of biomolecular interaction networks, refAbstract=null), Reference(id=1237831268050719695, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2025, volume=42, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[40], rfOrder=41, authorNames=MARTINČOVÁ M, SOUKUP A, journalName=Current Plant Biology, refType=null, unstructuredReference=MARTINČOVÁ M, SOUKUP A. Twenty years of AT-HOOK MOTIF NUCLEAR LOCALIZED (AHL) gene family research–their potential in crop improvement[J]. Current Plant Biology, 2025, 42: 100460., articleTitle=Twenty years of AT-HOOK MOTIF NUCLEAR LOCALIZED (AHL) gene family research–their potential in crop improvement, refAbstract=null), Reference(id=1237831268117828560, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2003, volume=29, issue=3, pageStart=396, pageEnd=409, url=null, language=null, rfNumber=[41], rfOrder=42, authorNames=LAWTON-RAUH A, journalName=Molecular Phylogenetics and Evolution, refType=null, unstructuredReference=LAWTON-RAUH A. Evolutionary dynamics of duplicated genes in plants[J]. Molecular Phylogenetics and Evolution, 2003, 29(3): 396-409., articleTitle=Evolutionary dynamics of duplicated genes in plants, refAbstract=null), Reference(id=1237831268176548817, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2025, volume=12, issue=3, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[42], rfOrder=43, authorNames=XIAO L, CHENG D, OU W, CHEN X, RABBI I Y, WANG W Q, LI K M, YAN H B, journalName=Horticulture Research, refType=null, unstructuredReference=XIAO L, CHENG D, OU W, CHEN X, RABBI I Y, WANG W Q, LI K M, YAN H B. Advancements and strategies of genetic improvement in cassava (Manihot esculenta Crantz): from conventional to genomic approaches[J]. Horticulture Research, 2025, 12(3): uhae341., articleTitle=Advancements and strategies of genetic improvement in cassava (Manihot esculenta Crantz): from conventional to genomic approaches, refAbstract=null), Reference(id=1237831268252046290, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2021, volume=14, issue=6, pageStart=851, pageEnd=854, url=null, language=null, rfNumber=[43], rfOrder=44, authorNames=HU W, JI C M, SHI H T, LIANG Z, DING Z H, YE J Q, OU W J, ZHOU G, TIE W W, YAN Y, journalName=Molecular Plant, refType=null, unstructuredReference=HU W, JI C M, SHI H T, LIANG Z, DING Z H, YE J Q, OU W J, ZHOU G, TIE W W, YAN Y. Allele-defined genome reveals biallelic differentiation during cassava evolution[J]. Molecular Plant, 2021, 14(6): 851-854., articleTitle=Allele-defined genome reveals biallelic differentiation during cassava evolution, refAbstract=null), Reference(id=1237831268344320979, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, doi=null, pmid=null, pmcid=null, year=2023, volume=74, issue=1, pageStart=111, pageEnd=137, url=null, language=null, rfNumber=[44], rfOrder=45, authorNames=MARAND A P, EVELAND A L, KAUFMANN K, SPRINGER N M, journalName=Annual Review of Plant Biology, refType=null, unstructuredReference=MARAND A P, EVELAND A L, KAUFMANN K, SPRINGER N M. cis-Regulatory elements in plant development, adaptation, and evolution[J]. Annual Review of Plant Biology, 2023, 74(1): 111-137., articleTitle=cis-Regulatory elements in plant development, adaptation, and evolution, refAbstract=null)], funds=[Fund(id=1237831262765896568, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, awardId=2021JJLH0034, language=CN, fundingSource=海南省自然科学基金联合项目(2021JJLH0034), fundOrder=null, country=null), Fund(id=1237831262833005435, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, awardId=32460528, language=CN, fundingSource=国家自然科学基金项目(32460528), fundOrder=null, country=null), Fund(id=1237831262933668734, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, awardId=SCKJ-JYRC-2023-75, language=CN, fundingSource=“崖州湾”菁英人才科技专项项目(SCKJ-JYRC-2023-75), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)]), AuthorCompany(id=1237831254733804206, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254742192814, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254733804206, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3. College of Agronomy, Henan Agricultural University, Zhengzhou, Henan 450046, China), AuthorCompanyExt(id=1237831254746387119, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254733804206, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3.河南农业大学农学院,河南郑州 450046)]), AuthorCompany(id=1237831254817690290, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254826078898, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254817690290, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=4. Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan 571339, China), AuthorCompanyExt(id=1237831254830273203, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254817690290, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=4.中国热带农业科学院椰子研究所,海南文昌 571339)])], figs=[ArticleFig(id=1237831259209126705, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 1, caption=Phylogenetic tree of AHL gene family in cassava and five closely related species, figureFileSmall=2qh3PgFZXwK9WK6uCRYCsQ==, figureFileBig=U5+U0vLHCzzvwqTsr4Hmeg==, tableContent=null), ArticleFig(id=1237831259284624180, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图1, caption=木薯与其他5个近缘物种AHL家族的系统发育树分析, figureFileSmall=2qh3PgFZXwK9WK6uCRYCsQ==, figureFileBig=U5+U0vLHCzzvwqTsr4Hmeg==, tableContent=null), ArticleFig(id=1237831259372704567, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 2, caption=Chromosome localization of cassava MeAHL gene family, figureFileSmall=/nAvdzdg+roVSNuR9tnFWw==, figureFileBig=cRY7Ml9JTUIoupmQz1Jf9A==, tableContent=null), ArticleFig(id=1237831259448202042, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图2, caption=MeAHL基因家族成员的染色体定位, figureFileSmall=/nAvdzdg+roVSNuR9tnFWw==, figureFileBig=cRY7Ml9JTUIoupmQz1Jf9A==, tableContent=null), ArticleFig(id=1237831259527893821, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 3, caption=Duplication type analysis of MeAHL gene family in cassava, figureFileSmall=qf8zKVkr8q4auJsQM+UHbw==, figureFileBig=FYR+niS0kJDORK+xkYvmbA==, tableContent=null), ArticleFig(id=1237831259590808384, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图3, caption=MeAHL基因家族复制类型分析, figureFileSmall=qf8zKVkr8q4auJsQM+UHbw==, figureFileBig=FYR+niS0kJDORK+xkYvmbA==, tableContent=null), ArticleFig(id=1237831259653722947, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 4, caption=Analysis of MeAHL gene structures in cassava, figureFileSmall=ifnd4x1Pgp8jC4zOJR1/HQ==, figureFileBig=hArabKAFab+sgPYYc5K07Q==, tableContent=null), ArticleFig(id=1237831259733414726, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图4, caption=MeAHL基因结构分析, figureFileSmall=ifnd4x1Pgp8jC4zOJR1/HQ==, figureFileBig=hArabKAFab+sgPYYc5K07Q==, tableContent=null), ArticleFig(id=1237831259787940680, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 5, caption=Analysis of MeAHL protein conserved domain in cassava, figureFileSmall=NxyrA4b/iG0NXxxhwCDFVQ==, figureFileBig=G+Z3VEAU+0G/XPcGbgC0YQ==, tableContent=null), ArticleFig(id=1237831259863438155, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图5, caption=MeAHL蛋白保守结构域分析, figureFileSmall=NxyrA4b/iG0NXxxhwCDFVQ==, figureFileBig=G+Z3VEAU+0G/XPcGbgC0YQ==, tableContent=null), ArticleFig(id=1237831259917964110, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 6, caption=Analysis of MeAHL protein conserved motifs in cassava, figureFileSmall=cWMU+NwlSrLLWA3JNRDYWA==, figureFileBig=55f8cT4kiTU81tnMNUCyIg==, tableContent=null), ArticleFig(id=1237831259980878671, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图6, caption=MeAHL蛋白保守基序分析, figureFileSmall=cWMU+NwlSrLLWA3JNRDYWA==, figureFileBig=55f8cT4kiTU81tnMNUCyIg==, tableContent=null), ArticleFig(id=1237831260043793234, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 7, caption=Analysis of cis-acting elements in the promoter regions of cassava MeAHL family genes, figureFileSmall=o9Auw9ctdlxSSg5giyRPlg==, figureFileBig=Y08l4p0RRE55B9O8AKVJ+A==, tableContent=null), ArticleFig(id=1237831260106707795, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图7, caption=MeAHL家族基因启动子区顺式作用元件分析, figureFileSmall=o9Auw9ctdlxSSg5giyRPlg==, figureFileBig=Y08l4p0RRE55B9O8AKVJ+A==, tableContent=null), ArticleFig(id=1237831260186399574, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 8, caption=Expression profiles of MeAHL family members among eleven tissues of cassava

A. Expression heatmap of MeAHL genes belonging to Clade A subfamily. B. Expression heatmap of MeAHL genes belonging to Clade B subfamily.

, figureFileSmall=QMlkoRXI1VtDBCrPLBFi7g==, figureFileBig=ZEJT9lrkprNBNWr8awSZdw==, tableContent=null), ArticleFig(id=1237831261625045847, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图8, caption=木薯MeAHL基因家族成员在11种组织中的表达分析

A. Clade A分支基因在不同组织中表达量热图;B. Clade B分支基因在不同组织中的表达量热图。

, figureFileSmall=QMlkoRXI1VtDBCrPLBFi7g==, figureFileBig=ZEJT9lrkprNBNWr8awSZdw==, tableContent=null), ArticleFig(id=1237831261700543321, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 9, caption=Expression analysis of AHL genes in cassava after drought treatment, figureFileSmall=kOfsTPkORVnfNvyY8NSjgw==, figureFileBig=vkACm3X45vf/LsQBlyvq5w==, tableContent=null), ArticleFig(id=1237831261809595227, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图9, caption=MeAHL基因家族成员在干旱处理后的表达分析, figureFileSmall=kOfsTPkORVnfNvyY8NSjgw==, figureFileBig=vkACm3X45vf/LsQBlyvq5w==, tableContent=null), ArticleFig(id=1237831261885092700, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 10, caption=Expression profiles of MeAHL genes in cassava stem under Xam infection, figureFileSmall=Bo2zLOlTc2KTRPVa015MnQ==, figureFileBig=0RSxo4knaunnfIXacOI2AQ==, tableContent=null), ArticleFig(id=1237831261985755999, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图10, caption=MeAHL基因家族成员在Xam侵染后的木薯茎组织表达分析, figureFileSmall=Bo2zLOlTc2KTRPVa015MnQ==, figureFileBig=0RSxo4knaunnfIXacOI2AQ==, tableContent=null), ArticleFig(id=1237831262048670562, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 11, caption=Expression profiles of AHL genes in leaves of cassava under mite infestation, figureFileSmall=K2sOw99VuaWHy1IVvtHlSA==, figureFileBig=XtuGn7i4VIUlJqSNYuyyNQ==, tableContent=null), ArticleFig(id=1237831262107390821, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图11, caption=MeAHL基因家族成员在螨虫侵害后的叶片组织表达分析, figureFileSmall=K2sOw99VuaWHy1IVvtHlSA==, figureFileBig=XtuGn7i4VIUlJqSNYuyyNQ==, tableContent=null), ArticleFig(id=1237831262187082599, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 12, caption=Analysis of AHL protein interaction network in cassava, figureFileSmall=3gFV4YVIYSA+thXgomh4vA==, figureFileBig=o34Z5eIagETDTcErCEAEPA==, tableContent=null), ArticleFig(id=1237831262279357289, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图12, caption=MeAHL基因家族成员蛋白互作网络分析, figureFileSmall=3gFV4YVIYSA+thXgomh4vA==, figureFileBig=o34Z5eIagETDTcErCEAEPA==, tableContent=null), ArticleFig(id=1237831262354854763, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Tab. 1, caption=

Basic information of MeAHL proteins

, figureFileSmall=null, figureFileBig=null, tableContent=
序号
No.
基因 ID
Gene ID
氨基酸数量
Amino acid(aa)
分子量
Molecular weight/Da
等电点
Isoelectric point
不稳定指数
Instability index
总平均亲水性
GRAVY
亚细胞定位
Subcellular localization
1SC20501G0662034735 781.7110.4547.86‒0.271细胞核
2SC20501G0755029431 094.686.8454.78‒0.503细胞核
3SC20501G0759035336 140.969.4955.95‒0.228叶绿体
4SC20501G1287026828 145.199.4047.64‒0.128内质网
内质网_质膜
5SC20501G1538035637 239.948.9044.55‒0.345细胞核
6SC20501G1746028229 570.509.1350.60‒0.211细胞质
7SC20501G2482034034 831.2810.1144.31‒0.248叶绿体
8SC20501G2549029731 454.186.5556.39‒0.534细胞核
9SC20501G2554034035 375.928.7239.52‒0.220叶绿体
10SC20502G0212034736 031.599.8852.72‒0.388叶绿体;质膜
11SC20502G0296029331 032.706.8053.81‒0.473细胞核
12SC20502G0300038440 067.739.3744.960.002质膜
13SC20502G082101006109 150.716.1549.84‒0.467细胞核
14SC20502G1075035837 100.509.1749.04‒0.320细胞核
15SC20502G1284027929 965.744.9449.27‒0.278细胞质
16SC20502G1339031232 669.386.8958.06‒0.491内质网
17SC20503G1575030231 177.095.8850.52‒0.227细胞外
18SC20504G0091035336 101.595.0546.30‒0.239细胞核
19SC20505G0345034034 961.5710.1141.28‒0.254细胞核
20SC20505G0420030732 597.636.5058.32‒0.461线粒体
21SC20505G0436032533 760.209.4146.14‒0.274线粒体
22SC20505G1281029029 120.329.1648.71‒0.293细胞核
23SC20505G1291037537 285.7710.0850.04‒0.244细胞核
24SC20506G1264038640 564.049.3140.63‒0.311叶绿体
25SC20507G1165030131 746.005.2657.58‒0.461叶绿体
26SC20508G0223039040 087.536.1853.45‒0.350叶绿体
27SC20508G1338035136 347.458.8049.67‒0.455细胞核
28SC20508G1340028529 575.055.8950.49‒0.489叶绿体
29SC20509G0509036437 761.179.1751.24‒0.402细胞核
30SC20509G1392028829 961.505.5054.54‒0.480细胞核
31SC20509G1395037739 855.7510.0746.88‒0.495细胞核
32SC20510G0259033735 685.135.5562.23‒0.740细胞核
33SC20511G1526034135 333.685.5750.24‒0.209细胞核
34SC20514G0320042144 875.568.6241.43‒0.350细胞核
35SC20515G0360018818 645.945.1945.720.077内质网
36SC20515G1592029730 795.286.0345.86‒0.344细胞质
37SC20515G1593037138 266.759.5157.11‒0.444细胞核
38SC20517G0111041943 832.839.8060.72‒0.565细胞核
39SC20517G0114037740 278.699.2445.25‒0.194线粒体
40SC20518G0020044645 545.079.8555.40‒0.301线粒体
41SC20518G0578031532 853.948.3657.93‒0.355细胞质
), ArticleFig(id=1237831262442935149, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=表1, caption=

木薯MeAHL蛋白基本信息

, figureFileSmall=null, figureFileBig=null, tableContent=
序号
No.
基因 ID
Gene ID
氨基酸数量
Amino acid(aa)
分子量
Molecular weight/Da
等电点
Isoelectric point
不稳定指数
Instability index
总平均亲水性
GRAVY
亚细胞定位
Subcellular localization
1SC20501G0662034735 781.7110.4547.86‒0.271细胞核
2SC20501G0755029431 094.686.8454.78‒0.503细胞核
3SC20501G0759035336 140.969.4955.95‒0.228叶绿体
4SC20501G1287026828 145.199.4047.64‒0.128内质网
内质网_质膜
5SC20501G1538035637 239.948.9044.55‒0.345细胞核
6SC20501G1746028229 570.509.1350.60‒0.211细胞质
7SC20501G2482034034 831.2810.1144.31‒0.248叶绿体
8SC20501G2549029731 454.186.5556.39‒0.534细胞核
9SC20501G2554034035 375.928.7239.52‒0.220叶绿体
10SC20502G0212034736 031.599.8852.72‒0.388叶绿体;质膜
11SC20502G0296029331 032.706.8053.81‒0.473细胞核
12SC20502G0300038440 067.739.3744.960.002质膜
13SC20502G082101006109 150.716.1549.84‒0.467细胞核
14SC20502G1075035837 100.509.1749.04‒0.320细胞核
15SC20502G1284027929 965.744.9449.27‒0.278细胞质
16SC20502G1339031232 669.386.8958.06‒0.491内质网
17SC20503G1575030231 177.095.8850.52‒0.227细胞外
18SC20504G0091035336 101.595.0546.30‒0.239细胞核
19SC20505G0345034034 961.5710.1141.28‒0.254细胞核
20SC20505G0420030732 597.636.5058.32‒0.461线粒体
21SC20505G0436032533 760.209.4146.14‒0.274线粒体
22SC20505G1281029029 120.329.1648.71‒0.293细胞核
23SC20505G1291037537 285.7710.0850.04‒0.244细胞核
24SC20506G1264038640 564.049.3140.63‒0.311叶绿体
25SC20507G1165030131 746.005.2657.58‒0.461叶绿体
26SC20508G0223039040 087.536.1853.45‒0.350叶绿体
27SC20508G1338035136 347.458.8049.67‒0.455细胞核
28SC20508G1340028529 575.055.8950.49‒0.489叶绿体
29SC20509G0509036437 761.179.1751.24‒0.402细胞核
30SC20509G1392028829 961.505.5054.54‒0.480细胞核
31SC20509G1395037739 855.7510.0746.88‒0.495细胞核
32SC20510G0259033735 685.135.5562.23‒0.740细胞核
33SC20511G1526034135 333.685.5750.24‒0.209细胞核
34SC20514G0320042144 875.568.6241.43‒0.350细胞核
35SC20515G0360018818 645.945.1945.720.077内质网
36SC20515G1592029730 795.286.0345.86‒0.344细胞质
37SC20515G1593037138 266.759.5157.11‒0.444细胞核
38SC20517G0111041943 832.839.8060.72‒0.565细胞核
39SC20517G0114037740 278.699.2445.25‒0.194线粒体
40SC20518G0020044645 545.079.8555.40‒0.301线粒体
41SC20518G0578031532 853.948.3657.93‒0.355细胞质
), ArticleFig(id=1237831262560375664, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Tab. 2, caption=

Ka and Ks values of MeAHL gene duplicates in cassava

, figureFileSmall=null, figureFileBig=null, tableContent=
类型Type基因ID1 Gene ID1基因ID2 Gene ID2Ka值Ka valueKs值Ks value
DSDSC20505G12810SC20501G128700.42 
 SC20515G15920SC20517G011400.060.35
 SC20515G15930SC20517G011100.100.45
WGDSC20501G06620SC20502G021200.100.38
 SC20501G07550SC20502G029600.020.23
 SC20501G07590SC20502G030000.040.33
 SC20501G15380SC20502G107500.100.46
 SC20501G17460SC20502G128400.250.55
 SC20501G24820SC20505G034500.060.32
 SC20501G25490SC20505G042000.060.28
 SC20501G25540SC20505G043600.070.36
 SC20502G02120SC20505G034500.371.53
 SC20502G02960SC20505G042000.162.55
 SC20502G03000SC20505G043600.241.57
 SC20502G10750SC20505G129100.291.73
 SC20502G13390SC20518G057800.080.47
 SC20503G15750SC20515G036000.040.36
 SC20504G00910SC20508G022300.551.50
 SC20505G04360SC20506G126400.311.12
 SC20505G12910SC20518G002000.160.44
 SC20506G12640SC20514G032000.140.38
 SC20507G11650SC20510G025900.130.46
 SC20508G13380SC20509G139500.090.42
 SC20508G13400SC20509G139200.050.36
 SC20508G02230SC20509G050900.160.39
 SC20509G05090SC20511G152600.481.88
 SC20509G13920SC20515G036000.17NaN
), ArticleFig(id=1237831262631678835, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=表2, caption=

木薯MeAHL复制基因的Ka和Ks值

, figureFileSmall=null, figureFileBig=null, tableContent=
类型Type基因ID1 Gene ID1基因ID2 Gene ID2Ka值Ka valueKs值Ks value
DSDSC20505G12810SC20501G128700.42 
 SC20515G15920SC20517G011400.060.35
 SC20515G15930SC20517G011100.100.45
WGDSC20501G06620SC20502G021200.100.38
 SC20501G07550SC20502G029600.020.23
 SC20501G07590SC20502G030000.040.33
 SC20501G15380SC20502G107500.100.46
 SC20501G17460SC20502G128400.250.55
 SC20501G24820SC20505G034500.060.32
 SC20501G25490SC20505G042000.060.28
 SC20501G25540SC20505G043600.070.36
 SC20502G02120SC20505G034500.371.53
 SC20502G02960SC20505G042000.162.55
 SC20502G03000SC20505G043600.241.57
 SC20502G10750SC20505G129100.291.73
 SC20502G13390SC20518G057800.080.47
 SC20503G15750SC20515G036000.040.36
 SC20504G00910SC20508G022300.551.50
 SC20505G04360SC20506G126400.311.12
 SC20505G12910SC20518G002000.160.44
 SC20506G12640SC20514G032000.140.38
 SC20507G11650SC20510G025900.130.46
 SC20508G13380SC20509G139500.090.42
 SC20508G13400SC20509G139200.050.36
 SC20508G02230SC20509G050900.160.39
 SC20509G05090SC20511G152600.481.88
 SC20509G13920SC20515G036000.17NaN
)], attaches=null, journal=Journal(id=1235979950382170114, delFlag=0, nameCn=热带作物学报, nameEn=Chinese Journal of Tropical Crops, nameHistory1=null, nameHistory2=null, issn=1000-2561, eissn=null, cn=46-1019/S, coden=null, periodic=0, language=CN, oaType=null, ccby=null, superviseOffice=null, ownerOffice=null, pubOffice=null, editorOffice=null, officeType=null, aims=null, clcCode=null, officeProv=null, officeCity=null, officeAddr=null, officeZip=null, officeEmail=null, officePhone=null, editDirector=null, officeDirector=null, officeDirectorPhone=null, officeStaffNum=null, officeEmpNum=null, coverPicUrl=rSpRGAeeQLlh4ctWRlYD+Q==, journalPrice=null, startedYear=null, abbrevIsoEn=Chinese Journal of Tropical Crops, journalRemark=null, publicationField=null, createdTime=1772610183570, updatedTime=1772610584442, createdBy=18614031015, updatedBy=13701087609, firstLetterCn=C, firstLetterEn=C, subjectCode=Life Sciences, subjectName=null, subjectCodeEn=Life Sciences, subjectNameEn=null, picCn=rSpRGAeeQLlh4ctWRlYD+Q==, picEn=yduQpAVjKKHqap4NxKXlbA==, jcr=null, cjcr=null, exts=[JournalExt(id=1235981631845101904, language=CN, name=热带作物学报, nameHistory1=null, nameHistory2=null, managedBy=, sponsoredBy=, publishedBy=, editorOffice=, officeProv=null, officeCity=null, officeAddr=, officeZip=, editDirector=, officeDirector=null, officePhone=null, coverPicUrl=null, journalRemark=, submitArticleUrl=null, websiteUrl=, createdTime=1772610584460, updatedTime=1772610584460, createdBy=13701087609, updatedBy=13701087609, submissionGuidelinesUrl=, submissionAuthorUrl=http://www.rdzwxb.com/jx_rdzwxb/authorLogOn.action, submissionEditorUrl=http://www.rdzwxb.com/jx_rdzwxb/editorLogOn.action, submissionReviewUrl=http://www.rdzwxb.com/jx_rdzwxb/expertLogOn.action, submissionCeEditorUrl=, submissionAeEditorUrl=, option={"copyright":""}), JournalExt(id=1235981631891239249, language=EN, name=Chinese Journal of Tropical Crops, nameHistory1=null, nameHistory2=null, managedBy=, sponsoredBy=, publishedBy=, editorOffice=, officeProv=null, officeCity=null, officeAddr=, officeZip=, editDirector=, officeDirector=null, officePhone=null, coverPicUrl=null, journalRemark=, submitArticleUrl=null, websiteUrl=, createdTime=1772610584471, updatedTime=1772610584471, createdBy=13701087609, updatedBy=13701087609, submissionGuidelinesUrl=, submissionAuthorUrl=http://www.rdzwxb.com/jx_rdzwxb/authorLogOn.action, submissionEditorUrl=http://www.rdzwxb.com/jx_rdzwxb/editorLogOn.action, submissionReviewUrl=http://www.rdzwxb.com/jx_rdzwxb/expertLogOn.action, submissionCeEditorUrl=, submissionAeEditorUrl=, option={"copyright":""})], databaseList=null, tenantJournalId=1235980609244409860, websiteList=[Website(id=1235982099111530981, webName=null, webTitle=null, webDomain=null, webCopyrigh=null, webIpcNo=null, seoTitle=null, seoKeywords=null, seoDescription=null, tenantJournalId=null, journalId=1235980609244409860, journalNameCn=null, journalNameEn=null, grayFlag=null, tenantId=1146029695717560320, platformId=null, journalGroupId=null, journalGroupNameCn=null, journalGroupNameEn=null, type=1, domain=https://castjournals.cast.org.cn/joweb/rdzwxb/CN, language=CN, createTime=1772610695865, createBy=18614031015, updateTime=1772610800030, updateBy=18614031015, name=热带作物学报-中文, tplId=1146099689490845704, title=热带作物学报, delFlag=0, indexPage=/home, props=[WebsiteProps(id=1235983794369516120, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=articleTextType, value=kx, createTime=1772611100046, updateTime=1772611100046, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794352738901, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=banner, value=null, createTime=1772611100042, updateTime=1772611100042, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794386293339, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=grayFlag, value=0, createTime=1772611100050, updateTime=1772611100050, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794348544596, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=logo, value=https://castjournals.cast.org.cn/joweb/rdzwxb/CN/file/pic?fileId=+5LJ0jVieK8+0oCWDpqlZA==, createTime=1772611100041, updateTime=1772611100041, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794398876253, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=minRunFlag, value=0, createTime=1772611100053, updateTime=1772611100053, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794365321815, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=picServerUrl, value=https://castjournals.cast.org.cn/joweb/rdzwxb/CN/file/pic, createTime=1772611100045, updateTime=1772611100045, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794390487644, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=silenceFlag, value=0, createTime=1772611100051, updateTime=1772611100051, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794356933206, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=staticResourcePath, value=https://castjournals.cast.org.cn/joweb/cast_kjdb_cn_619/, createTime=1772611100043, updateTime=1772611100043, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794373710425, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=themeColor, value=null, createTime=1772611100047, updateTime=1772611100047, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983794377904730, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099111530981, code=themeStyle, value=null, createTime=1772611100048, updateTime=1772611100048, creator=18614031015, updator=18614031015)]), Website(id=1235982099266720252, webName=null, webTitle=null, webDomain=null, webCopyrigh=null, webIpcNo=null, seoTitle=null, seoKeywords=null, seoDescription=null, tenantJournalId=null, journalId=1235980609244409860, journalNameCn=null, journalNameEn=null, grayFlag=null, tenantId=1146029695717560320, platformId=null, journalGroupId=null, journalGroupNameCn=null, journalGroupNameEn=null, type=1, domain=https://castjournals.cast.org.cn/joweb/rdzwxb/EN, language=EN, createTime=1772610695902, createBy=18614031015, updateTime=1772610825771, updateBy=18614031015, name=热带作物学报-英文, tplId=1146101810881728533, title=Chinese Journal of Tropical Crops, delFlag=0, indexPage=/home, props=[WebsiteProps(id=1235983822664290914, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=articleTextType, value=kx, createTime=1772611106792, updateTime=1772611106792, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822634930783, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=banner, value=null, createTime=1772611106785, updateTime=1772611106785, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822693651045, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=grayFlag, value=0, createTime=1772611106799, updateTime=1772611106799, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822626542174, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=logo, value=https://castjournals.cast.org.cn/joweb/rdzwxb/EN/file/pic?fileId=+5LJ0jVieK8+0oCWDpqlZA==, createTime=1772611106783, updateTime=1772611106783, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822706233959, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=minRunFlag, value=0, createTime=1772611106802, updateTime=1772611106802, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822651708001, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=picServerUrl, value=https://castjournals.cast.org.cn/joweb/rdzwxb/EN/file/pic, createTime=1772611106789, updateTime=1772611106789, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822697845350, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=silenceFlag, value=0, createTime=1772611106800, updateTime=1772611106800, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822643319392, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=staticResourcePath, value=https://castjournals.cast.org.cn/joweb/cast_kjdb_en_623/, createTime=1772611106787, updateTime=1772611106787, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822672679523, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=themeColor, value=null, createTime=1772611106794, updateTime=1772611106794, creator=18614031015, updator=18614031015), WebsiteProps(id=1235983822685262436, tenantId=1146029695717560320, journalId=null, journalGroupId=null, siteId=1235982099266720252, code=themeStyle, value=null, createTime=1772611106797, updateTime=1772611106797, creator=18614031015, updator=18614031015)])], journalTitle=热带作物学报, weixinUrl=null, journalUrl=https://www.rdzwxb.com/, iacademicId=null, status=1, seqNo=null, journalTitleEn=Chinese Journal of Tropical Crops, journalPhotoCn=rSpRGAeeQLlh4ctWRlYD+Q==, journalPhotoEn=yduQpAVjKKHqap4NxKXlbA==, journalFirstLetter=C, journalRecommend=null, journalNew=null, journalCollection=null, jcrJf=null, cjcrJf=null, jcrJfStr=null, cjcrJfStr=null, submissionFirstDecision=null, sciSubjectClassification=null, casSubjectClassification=null, citeScore=null, totalCitationFrequency=null, icpCode=null, psCode=null, advertisingLicenseCode=null, copyrightInformation=null, country=null, option=, provinceCode=null, provinceName=null, collectFlag=false), detailUrlCn=https://castjournals.cast.org.cn/joweb/rdzwxb/CN/10.3969/j.issn.1000-2561.2025.10.002, detailUrlEn=https://castjournals.cast.org.cn/joweb/rdzwxb/EN/10.3969/j.issn.1000-2561.2025.10.002, pdfUrlCn=https://castjournals.cast.org.cn/joweb/rdzwxb/CN/PDF/10.3969/j.issn.1000-2561.2025.10.002, pdfUrlEn=https://castjournals.cast.org.cn/joweb/rdzwxb/EN/PDF/10.3969/j.issn.1000-2561.2025.10.002, aliStartDate=null, aliEndDate=null, collectionFlag=false, citedCount=null, citedUrl=null, reference=null)
收藏切换
木薯AT-hook基序核定位基因家族的全基因组鉴定、表达谱及调控网络分析
收藏切换
PDF下载
王雨 1, 2 , 郑芸霏 1, 3, * , 赵海旭 1 , 李美英 1, 2 , 谢郑楠 1, 2 , 叶晓雪 1, 2 , 纪长绵 1, 2, ** , 胡伟 1, 2, 4, **
热带作物学报 | 组学与生物技术 2025,46(10): 2299-2313
收起
收藏切换
热带作物学报 | 组学与生物技术 2025, 46(10): 2299-2313
木薯AT-hook基序核定位基因家族的全基因组鉴定、表达谱及调控网络分析
全屏
王雨1, 2, 郑芸霏1, 3, *, 赵海旭1, 李美英1, 2, 谢郑楠1, 2, 叶晓雪1, 2, 纪长绵1, 2, ** , 胡伟1, 2, 4, **
作者信息
  • 1.中国热带农业科学院三亚研究院,海南三亚 572025
  • 2.中国热带农业科学院热带生物技术研究所,海南海口 571101
  • 3.河南农业大学农学院,河南郑州 450046
  • 4.中国热带农业科学院椰子研究所,海南文昌 571339
  • 王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种

通讯作者:

**纪长绵,E-mail:;
胡伟,E-mail:
Genome-wide Identification, Expression Profiling and Network Analysis of AT-hook Gene Family in Cassava
Yu WANG1, 2, Yunfei ZHENG1, 3, Haixu ZHAO1, Meiying LI1, 2, Zhengnan XIE1, 2, Xiaoxue YE1, 2, Changmian JI1, 2, ** , Wei HU1, 2, 4, **
Affiliations
  • 1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
  • 2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China
  • 3. College of Agronomy, Henan Agricultural University, Zhengzhou, Henan 450046, China
  • 4. Coconut Research Institute, Chinese Academy of Tropical Agricultural Sciences, Wenchang, Hainan 571339, China
出版时间: 2025-10-25 doi: 10.3969/j.issn.1000-2561.2025.10.002
文章导航
收藏切换

AT-Hook基序核定位(AT-hook Motif Nuclear Localized,AHL)蛋白作为植物中广泛存在的调控因子,在植物生长发育调控和逆境胁迫中发挥重要作用。尽管该基因家族在多个植物中已被研究,但木薯(Manihot esculenta)AHL家族的基因组学特征、进化机制及其表达调控模式仍未见报道。本研究基于木薯SC205的参考基因组,通过全基因组鉴定、系统进化分析、基因结构解析以及大规模转录组数据整合,系统揭示MeAHL家族的进化特征、基因表达模式和调控模块。研究共鉴定41个MeAHL基因,其中40个为不稳定蛋白,氨基酸数量介于188~446 aa之间。系统进化分析将其分为Clade A和Clade B两个分支,并在Chr01和Chr02染色体的远端粒区域发现2个MeAHL基因簇。进化机制分析表明全基因组复制(WGD)事件是驱动该家族扩张的主要进化动力。结构域分析显示MeAHL基因含有PPC/DUF296结构域和AT-hook基序:Clade A基因含有单个Type-I AT-hook基序,而Clade B基因多具有Type-I和Type-II双基序。启动子顺式作用元件分析揭示MeAHL基因启动子区富集光响应元件、植物激素响应元件以及生物/非生物胁迫响应元件,暗示其功能多样性。多组织转录组分析显示MeAHL两个分支在11种不同组织中呈现差异表达模式,暗示其亚家族功能分化。非生物/生物胁迫转录组分析表明,部分MeAHL对干旱(ABA/PEG处理)、木薯细菌性萎蔫病(Xanthomonas axonopodis pv. manihotis)和螨虫侵害等胁迫具有显著响应,且呈现分支特异性的表达模式。蛋白互作网络分析显示部分MeAHL可与bHLH、NAC、ARF、NB-LRR等参与发育调控和逆境响应相关的蛋白形成功能模块。本研究结果系统解析MeAHL基因家族进化特征与亚家族功能分化,及其响应不同生物学过程的基因表达模式和部分MeAHL的调控模块,为利用该家族基因进行木薯分子育种设计提供理论依据。

木薯  /  AHL基因家族  /  生物信息学分析  /  表达分析  /  调控网络

The AT-hook Motif Nuclear Localized (AHL) protein family is known for its pivotal roles in plant growth regulation, developmental patterning, and stress signal transduction. Although the gene family has been studied in various plant species, the genomic characteristics, evolutionary mechanism, and expression profiles of the AHL family in cassava (Manihot esculenta) remain unexplored. In this study, we comprehensively investigated the evolutionary features and biological response of the MeAHL gene family through genome-wide identification, phylogenetic analysis, structural characterization, and large-scale transcriptomes based on the cassava SC205 reference genome. We identified 41 putative members through genome-wide identification. Physicochemical property analysis showed that all 41 MeAHLs were hydrophilic proteins, and 40 of them were unstable proteins, with the number of amino acids generally ranging from 188 to 446 aa. Phylogenetic analysis indicated that the MeAHL family members could be divided into two clades, Clade A and Clade B. Two MeAHL gene clusters were located in the distal telomeric regions of chromosomes Chr01 and Chr02, respectively. Replication type analysis revealed that the evolution of MeAHLs was mainly driven by whole-genome duplication (WGD) and dispersed duplication (DSD), with the Ka/Ks values <1. Evolutionary mechanism analysis indicated that whole-genome duplication (WGD) primarily drove the MeAHL gene family expansion. Gene structure analysis showed that MeAHL genes were mainly composed of 1‒10 exons. Analysis of conserved domains and motifs showed that all MeAHLs had the PPC/DUF296 domain and AT-hook motif. Members of Clade A generally contained one Type-I AT-hook motif. Among members of Clade B, except for SC20508G13380 and SC20509G13950, which contained one Type-II AT-hook motif, most members contained two AT-hooks (Type-I and Type-II). Cis-acting element analysis via PlantCARE showed that the cis-acting elements related to light response were the most abundant in MeAHLs, such as Box 4, G-box, and they also contained elements responsive to hormones, biotic stresses, and abiotic stresses, such as ABRE, MBS, W-box, and TC-rich repeats. Tissue-specific expression profiling revealed distinct expression patterns between two clades of MeAHL across 11 different tissues. Stress transcriptome analysis demonstrated significant responses of specific MeAHLs to drought (ABA/PEG treatments), cassava bacterial blight (Xanthomonas axonopodis pv. manihotis), and mite infestation, showing clade-specific regulatory patterns. Protein-protein interaction (PPI) network prediction suggested some MeAHLs formed functional modules with bHLH, NAC, ARF, and NB-LRR proteins involved in plant development and stress responses. This study would provide the systematic characterization of AHL family evolution and functional diversification in cassava, offering theoretical foundations for molecular breeding applications.

cassava  /  AHL gene family  /  bioinformatics analysis  /  expression analysis  /  protein-protein interaction (PPI) network
王雨, 郑芸霏, 赵海旭, 李美英, 谢郑楠, 叶晓雪, 纪长绵, 胡伟. 木薯AT-hook基序核定位基因家族的全基因组鉴定、表达谱及调控网络分析. 热带作物学报, 2025 , 46 (10) : 2299 -2313 . DOI: 10.3969/j.issn.1000-2561.2025.10.002
Yu WANG, Yunfei ZHENG, Haixu ZHAO, Meiying LI, Zhengnan XIE, Xiaoxue YE, Changmian JI, Wei HU. Genome-wide Identification, Expression Profiling and Network Analysis of AT-hook Gene Family in Cassava[J]. Chinese Journal of Tropical Crops, 2025 , 46 (10) : 2299 -2313 . DOI: 10.3969/j.issn.1000-2561.2025.10.002
木薯(Manihot esculenta Crantz)是属于大戟科(Euphorbiaceae)木薯属(Manihot)的一种二倍体植物,是热带地区种植最广泛的作物之一[1]。木薯作为全球第六大粮食作物,与马铃薯(Solanum tuberosum)、甘薯(Dioscorea esculenta)并称世界三大薯类作物[2],是非洲、南美洲和亚洲热带地区至关重要的食物来源[3]。木薯块根富含淀粉,其淀粉含量在干物质中占比高达85%以上,在纺织、造纸、食品及生物燃料生产等行业中具有重要用途[4],作为热带地区重要的粮食及经济作物,在我国热带地区农民脱贫致富和乡村振兴中发挥重要作用[5]。在木薯产业发展过程中,持续遭受多种生物与非生物胁迫的威胁,对木薯生长发育和产量造成严重影响[6]
AT-hook基序核定位(AT-hook motif nuclear localized,AHL)蛋白在植物生长发育、逆境胁迫、植物激素响应以及免疫应答过程中发挥重要调控作用[7]。AT-hook基序核定位蛋白是一类DNA结合蛋白,主要定位于细胞核,含有RGRP基序和PPC结构域(plant and prokaryote conserved domain)[8],RGRP基序的核心基序为精氨酸(Arg)-甘氨酸(Gly)-精氨酸(Arg)-脯氨酸(Pro)。已有研究表明AHL基因在陆生植物进化过程中分为Clade A和Clade B两个进化分支[9]。AHL蛋白作为转录因子,通过结合目标基因的DNA序列,正向或负向调控目标基因的转录,参与植物的生长发育过程,如叶柄生长[10]、根生长[11]、下胚轴伸长[12-13]、脉管系统分化[14]、开花[15-16]、叶片衰老[17]、幼苗形态建成[18]和根毛产量[11]等。AHL蛋白还参与非生物和生物胁迫响应过程,如对盐度[19]、干旱[20]、镰刀菌[21]和强毒假单胞菌[22]等。但迄今为止,只有相对较少的AHL家族得到了详细的研究,如拟南芥(Arabidopsis thaliana[8]、水稻(Oryza sativa[23]、番茄(Solanum lycopersicum[24]、大豆(Glycine max[25]、棉花(Gossypium hirsutum[26]、核桃(Juglans regia L[27]、毛果杨(Populus trichocarpa[28]和胡萝卜(Daucus carota subsp. sativus)[29]等。本团队前期研究发现,MeAHL17在木薯驯化过程中经历了强烈人工选择压力,显著提高木薯块根重量,同时导致木薯抗细菌性枯萎病能力降低[30]。木薯MeAHL31基因启动子响应盐和干旱等非生物胁迫[31]。然而,AHL在木薯全基因组水平特征信息、进化关系及系统的基因表达模式研究不足,阻碍了其在木薯新品种选育中的开发利用。
本研究利用生物信息学方法对木薯基因组进行MeAHL家族成员鉴定,揭示其基因组分布特征、基因复制类型、基因结构特征及启动子顺式作用元件特征等,并基于已有的83个木薯转录组数据,系统解析MeAHL家族基因在不同组织、不同生物和非生物胁迫处理下的基因表达模式,利用蛋白互作网络分析部分MeAHL蛋白的互作网络模块,揭示其潜在的生物学功能。研究结果为理解木薯MeAHL家族起源演化及其在不同生物学过程的表达模式提供重要理论基础,促进MeAHL基因在木薯分子育种开发利用。
供试植物材料为SC205号木薯,采自中国热带农业科学院热带生物技术研究所文昌基地(19°32ʹ16ʺN,110°45ʹ41ʺE)。
本研究从拟南芥基因组数据库TAIR(https://www.arabidopsis.org/)中获取拟南芥AtAHL基因家族蛋白序列,以29个拟南芥的AtAHL家族基因作为参考序列。利用Blastp将29个拟南芥AHL蛋白序列比对到木薯SC205基因组的蛋白序列文件,鉴定MeAHL基因家族的同源序列作为候选基因(参数:期望值E value<1E-5和序列同源性>45%)。进一步将候选基因的蛋白序列上传到NCBI Conserved Domain Search(https://www.ncbi.nlm.nih.gov/Structure/bwrpsb/bwrpsb.cgi)进行结构域预测。依据候选基因包含AHL基因家族的特征结构域PPC/DUF296(PF03479)和AT-hook基序最终确定MeAHL基因家族成员。利用ExPASy(http://web.expasy.org)在线软件库对筛选到的MeAHL基因家族成员进行蛋白理化性质预测,利用WoLF PSORT(https://wolfpsort.hgc.jp/)在线软件预测亚细胞定位。
从NCBI(https://www.ncbi.nlm.nih.gov/)数据库下载已报道的大戟科橡胶树(Hevea brasiliensis)、麻疯树(Jatropha curcas)、蓖麻(Ricinus communis)和油桐(Vernicia fordii)的AHL基因家族成员的蛋白序列。利用MUSCLE(v3.8.31)软件对来自木薯、拟南芥、橡胶树、麻疯树、蓖麻和油桐的AHL蛋白序列进行多序列比对。使用Mega软件,采用极大似然法(maximum likelihood,ML),设置bootstrap重复次数为1000次,构建AHL基因家族的系统发育进化树。根据木薯基因组gff注释文件,提取MeAHL基因在染色体上的位置信息,利用TBtools软件分析其染色体分布特征[32]
利用DupGen_finder流程[33]鉴定木薯MeAHL基因家族的复制基因对及复制类型。利用TBtools软件计算MeAHL复制基因对之间的同义替换率(Ks)和非同义替换率(Ka[32]。通过Ka/Ks比值分析复制基因对的选择压力,Ka/Ks<1表示基因受到纯化选择,Ka/Ks>1表示受到正选择,Ka/Ks=1表示受到中性选择。
从木薯SC205基因组注释文件中提取AHL家族成员的核酸和蛋白序列,包括其完整的基因组序列、外显子和内含子区域。分析MeAHL家族成员的基因结构,统计外显子数量和长度。利用MEME软件对木薯MeAHL基因家族成员进行保守结基序motif鉴定[34]。利用NCBI的Conserved domains软件进行保守结构域分析,并利用TBtools软件分析其motif和结构域的分布特征。
利用TBtools软件中的gff3序列提取工具提取木薯MeAHL基因起始密码子上游2000 bp序列作为候选启动子,提交到PlantCare(https://bioinformatics.psb.ugent.be/webtools/plantcare/html/)在线网站预测顺式作用元件。利用TBtools对预测的启动子顺式作用元件进行可视化分析[32]
本研究从国家基因组科学数据中心(https://download.cncb.ac.cn/)和NCBI数据库中共获得来自7个BioProject项目(PRJNA524260、PRJNA324539、PRJNA658570、PRJNA231851、PRJNA396755、PRJNA282938和PRJNA578024)的83个转录组样品数据集。木薯转录组测序数据来源于不同组织(如根、茎、叶、花、贮藏根等)和不同处理条件(如干旱、细菌性枯萎病病原菌、螨虫损伤)。转录原始测序数据经过Fastp软件包[35]质控后,用HISAT2 v1.34d软件[36]将高质量的转录组测序数据比对到木薯SC205参考基因组得到序列比对bam文件。采用StringTie v2.1.0软件[37]组装比对上的reads,构建转录本序列,并对比对到基因区域的reads数量做归一化处理,计算基因和转录本的表达量(FPKM)。利用DESeq 2软件[38]鉴定差异表达基因:差异倍数Fold Change ≥2,差异显著性FDR>0.05。使用R软件中的pheatmap工具包绘制热图,系统展示MeAHL基因在不同组织、不同非生物胁迫、不同生物胁迫下的基因表达模式。比较Clade A和Clade B两个分支成员的木薯MeAHL基因在不同组织中和逆境处理下的基因表达特征差异。
利用STRING(https://string-db.org/cgi)在线软件预测木薯MeAHL蛋白质的相互作用网络。基于预测结果,利用Cytoscape v3.9.1软件[39]构建木薯MeAHL蛋白的相互作用网络图。
本研究利用拟南芥29个高质量AtAHL基因的蛋白序列作为参考,利用Blastp同源比对到木薯SC205基因组蛋白序列文件(identify≥45%和E value<1E-5),鉴定AHL同源基因。同时,结合AHL基因家族的PPC/DUF296结构域(PF03479)与AT-hook基序特征对木薯SC205基因组进行AHL基因家族成员鉴定,最终获得41个MeAHL家族成员(表1)。MeAHL蛋白长度分析表明MeAHL编码氨基酸数量主要介于188~446 aa之间,其中SC20502G08210蛋白长度为1006 aa。蛋白理化性质分析发现,41个MeAHL的相对分子质量介于18 645.94~109 150.71 Da之间,理论等电点介于4.94~10.45之间。只有SC205-01G25540不稳定指数小于40,属于稳定蛋白,其余40个MeAHL的不稳定指数介于40.63~62.23之间,属于不稳定蛋白。40个MeAHL蛋白序列平均亲水性小于0,介于‒0.355~‒0.271之间,属于亲水性蛋白。利用WoLFPSORT在线软件预测木薯41个MeAHL的亚细胞定位,发现其分布在不同的亚细胞区域。18个MeAHL定位在细胞核,其余定位在线粒体和叶绿体等区域。该结果暗示MeAHL基因参与不同的生物学过程,与已报道AHL功能一致[40]
为了揭示MeAHL基因家族成员的进化关系,本研究利用模式植物拟南芥和木薯、橡胶树、麻疯树、蓖麻、油桐的AHL蛋白序列进行多序列比对,过滤低质量比对区域后,构建极大似然进化树(图1)。结果表明拟南芥、橡胶树、麻疯树、蓖麻、油桐和木薯的AHL蛋白分为Clade A和Clade B两个进化分支[9]。木薯MeAHL基因家族成员中,19个属于Clade A分支,22个属于Clade B分支,表明2个分支成员在进化过程中产生了功能分化。染色体位置分布特征分析结果如图2所示,MeAHL基因不均匀地分布在木薯基因组的15条染色体上,分别为Chr01、Chr02、Chr03、Chr04、Chr05、Chr06、Chr07、Chr08、Chr09、Chr10、Chr11、Chr14、Chr15、Chr17和Chr18。其中,在Chr01染色体上分布的MeAHL数量最多,包含4个Clade A成员和5个Clade B成员。其余的MeAHL基因中,7个基因(4个Clade A和3个Clade B)定位在Chr02染色体上;5个基因(2个Clade A成员和3个Clade B成员)定位在Chr05染色体上;3个基因(1个Clade A成员和2个Clade B成员)定位在Chr08染色体上;3个基因(1个Clade A成员和2个Clade B成员)定位在Chr09染色体上;3个基因(2个Clade A成员和1个Clade B成员)定位在Chr15染色体上;各有2个MeAHL基因(1个Clade A成员和1个Clade B成员)定位在Chr17和Chr18染色体上,其余7条染色体均只有1个MeAHL基因。Chr01和Chr02染色体的远端粒区域分别有2个MeAHL基因簇(图2)。
基因复制分析发现木薯基因组中41个MeAHL基因主要来自DSD(dispersed duplication,分散复制)和WGD(whole genome duplication,全基因组复制),表明基因复制对木薯MeAHL家族的形成有重要贡献(表2图3)。木薯经历2次全基因组复制事件,包括1次双子叶植物共有的祖先基因组三倍化时间(WGT-γ)和近期1次谱系特异性的全基因组复制事件(lineage-specific WGD)[9],表明全基因组复制和基因保留可能是木薯AHL基因家族形成的主要进化动力。植物基因组中基因复制是基因家族扩张的重要进化驱动力,为植物的基因突变和表型多样性提供重要遗传材料[41]。MeAHL复制基因对之间选择压力分析发现其Ka/Ks值都小于1,表明这些复制基因对形成后经历强烈的自然选择,暗示其在木薯环境适应性和表型多样性中的发挥重要作用。
MeAHL基因结构分析结果如图4所示,Clade A分支中16个基因(84.2%)属于单外显子结构类型。其余3个基因(SC20503G15750SC20517G01140SC20502G08210)属于多外显子基因,可能来源于单外显子基因内含子插入事件。Clade B分支中的22个MeAHL基因属于多外显子基因类型。Clade B分支比Clade A分支表现出更明显的基因长度变化。以上结果表明MeAHL基因家族2个进化分支之间出现基因结构的分化可能导致功能差异。保守结构域分析结果如图5所示,41个木薯MeAHL蛋白均含有PPC/DUF296结构域(PF03479)。保守基序分析结果如图6所示,木薯MeAHL蛋白具有10个保守基序(motif 1~motif 10),其中motif 4为Type-I类型AT-hook结构域,motif 5为Type-II类型AT-hook结构域。Clade A分支成员含有一个Type-I类型AT-hook基序,而Clade B分支成员同时含有1个Type-II类型或者Type-I和Type-II类型AT-hook基序。
顺式作用元件分析结果(图7)表明,41个MeAHL基因的启动子区主要存在19类顺式作用元件,主要与光信号响应、植物激素、生物和非生物胁迫响应相关。光响应元件(light-response element)数量最多,表明其在光信号传导和环境适应性生物学过程中发挥重要作用。植物激素类响应元件如茉莉酸甲酯(CGTCA-motif)、脱落酸(ABRE)、水杨酸(ABRE、TCA-element)、赤霉素(P-box、GARE-motif)和生长素(TGA-element、AuxRR-core)等相关元件,广泛分布在MeAHL启动子区域,表明其可能参与植物激素响应生物过程。31个MeAHL基因的启动子中含有69个ABA响应元件(ABRE),其中包含4个以上ABRE的MeAHL基因有SC20501G07550(4个)、SC20501G25540(6个)、SC20502G02960(6个)、SC20505G12810(7个)、SC20515G03600(5个)和SC20517G01110(4个)。干旱诱导的MYB结合位点响应元件(MBS)和低温响应元件(LTR)是主要的非生物胁迫相关元件。18个MeAHL基因启动子中含有29个干旱诱导相关的MYB结合位点(MBS),其中SC20501G12870(4个)、SC20501G25540(3个)和SC20506G12640(3个)含有3个以上的MBS元件。此外,10个MeAHL基因含防御相关TC-rich repeats,24个MeAHL基因含伤口响应元件WUN-motif。以上结果表明,MeAHL可能广泛参与木薯植物激素响应和环境适应性,与木薯MeAHL17[30]参与木薯细菌性枯萎病抗性和块根重量形成过程及MeAHL31[31]参与茉莉酸甲酯(methyl jasmonate)介导的盐和干旱胁迫响应一致。
本研究系统解析了木薯MeAHL基因在包括有序的胚性愈伤组织(OES)、根尖分生组织(RAM)、叶片(leaf)、叶片中脉(midvein)、叶柄(petiole)、叶芽(lateral bud)、茎(stem)、贮藏根(storage root)、须根(fibrous root)、松散的胚性愈伤组织(FEC)、茎尖分生组织(SAM)共11种组织类型中的基因表达模式(图8)。Clade A分支基因倾向在根顶端分生组织、须根、贮藏根和松散的胚性愈伤组织中特异性高表达,而多数Clade B分支基因在全部组织中表现出高表达模式。Clade A和Clade B分支的大部分基因在FEC和OES中高表达,推测其参与木薯无性繁殖生物学过程。在Clade B分支中,SC20509G05090SC20511G15260SC20518G00200SC20502G10750在松散的胚性愈伤组织中特异性高表达,其可能在诱导木薯早期具有高度胚性分化能力的胚性愈伤组织过程中发挥重要作用,可作为木薯组织培养和遗传转化效率改良的重要目标基因。Clade A和Clade B分支在叶片、叶片中脉、叶柄、叶芽和茎尖分生组织中表现出差异的表达模式,说明它们在不同组织中出现功能分化。
木薯能在热带地区常见的干旱和肥力低下的土壤中生长良好,表现出较强的抗逆能力[42]。本研究解析了木薯MeAHL基因在ABA(脱落酸)和PEG(聚乙二醇)处理模拟干旱胁迫条件下的叶片基因表达模式(图9)。Clade A成员SC20502G13390SC20510G02590SC20507G11650在ABA处理的叶片组织中表达量下调,而Clade B成员SC20501G24820SC20505G03450SC20504G00910的表达量上调。经PEG处理后,Clade A成员SC20502G13390SC20518G05780的表达量下调,而Clade B成员SC20504G00910的表达量上调。在拟南芥中过表达AtAHL17能够显著促进根毛的产生和伸长。在干旱胁迫下(ABA和PEG处理),Clade A成员SC20502G13390MeAHL17)的表达量均显著降低,表明木薯为了更好地适应干旱环境而优化基因表达谱的一种策略[20]。在水稻中,OsAHL1的过表达显著提高了植株对干旱胁迫的耐受性[20]。杨树中的PtrAHL34在干旱胁迫下的表达模式和功能与OsAHL1相似[28]。Clade B成员SC20504G00910在ABA和PEG处理后表达量均上升,表明其可能参与ABA信号通路介导的干旱响应。
致病菌Xanthomonas axonopodis pv. manihotis(Xam)引起的木薯细菌性枯萎病(cassava bacterial blight,CBB),严重威胁木薯产量[29]。为了解析MeAHL基因在细菌性枯萎病中的响应特征,本研究利用2组独立的Xam侵染木薯茎组织的转录组数据,分别解析了木薯茎组织中接种TALE1Xam致病性菌株0、5、7 d后和接种Xam681致病性菌株1、3、5 d后的转录组MeAHL基因表达模式。在接种TALE1Xam致病性菌株试验中,ORST4为接种非致病性菌株的对照组(CK1),TALE1Xam为接种致病性菌株的试验组;在接种Xam681致病性菌株试验中,ck为未接种的为对照组(CK2),MgCl2为接种无致病菌的氯化镁溶液的对照组,Xam681为接种致病性菌株的试验组。比较Clade A和Clade B分支成员在致病性菌株TALE1_XamXam681侵染条件下木薯茎组织中的基因表达模式(图10)发现,Clade A基因:TALE1_Xam处理5、7 d时,SC20502G13390SC20518G05780表达量明显高于对照组;Xam681侵染1 d时,SC20502G13390SC20518G05780SC20507G11650的表达量均呈现上调表达趋势;接种Xam681第3天和第5天后,其在对照和处理组之间差异表达,但表达量明显降低。SC20502G13390MeAHL17)与木薯细菌性枯萎病抗性显著关联,是木薯驯化过程中导致抗病性丢失的核心基因[30]SC20502G13390在致病性Xam菌株侵染过程中显著高表达,表明其参与细菌性枯萎病抗性响应过程,是抗细菌性枯萎病木薯遗传改良的重要目标基因。Clade B基因:TALE1_Xam侵染后,SC20501G24820SC20505G12910SC20502G02120SC20505G04360在对照和处理组之间表现出差异表达,其中SC20505G12910在侵染5 d后仍维持高表达水平。Xam681侵染试验进一步证实,SC20501G24820SC20505G12910SC20502G02120SC20505G04360在对照和处理组之间差异表达。
Clade A和Clade B分支基因在不同程度螨虫侵害后的叶片中基因表达模式分析结果如图11所示。Clade A分支中SC20518G05780SC20502G13390SC20501G12870在受到严重侵害的叶片中表达量明显高于受到轻度侵害的样品,而SC20502G08210则在轻度损伤下呈现更高表达水平。Clade B分支中SC20502G02120SC20509G13950SC20514G03200SC20501-G06620SC20501G07590在螨虫侵害后均呈现显著上调表达,且轻度损伤下的表达量普遍高于重度损伤。
部分MeAHL蛋白互作网络(PPI)分析结果如图12所示,部分MeAHL蛋白成员间存在显著的模块化互作特征。SC20501G07550、SC20502-G02960、SC20501G25490和SC20505G04200形成一个紧密连接的蛋白簇,这些MeAHL蛋白可能与bHLH、NAC、ARF、NB-LRR等蛋白存在互作关系。bHLH、NAC、生长素响应因子ARF、抗病基因NB-LRR蛋白主要与生长发育和逆境响应相关。
AT-hook基序核定位蛋白是一种保守的转录因子,在植物生长发育和逆境胁迫中发挥关键作用[40]。木薯(SC205)基因组包含41个MeAHL基因,其部分蛋白定位于细胞核,与其作为转录因子的潜在功能相符。木薯MeAHL家族基因可分为Clade A和Clade B两个分支,与其他陆生植物AHL家族分类一致,表明其在进化上的保守性[9]。WGD(全基因组复制)和DSD(分散复制)是驱动木薯MeAHL家族形成的主要进化驱动力,表明木薯的2次全基因组复制事件对MeAHL基因家族形成的重要贡献[43]。Clade A成员主要为单外显子基因结构,而Clade B成员主要为多个外显子基因结构,与其他物种的AHL基因家族结构一致[23,25],其基因结构差异表明MeAHL两个分支进化过程中可能出现了功能分化。顺式作用元件是位于基因启动子区域的一类DNA序列。转录因子能够识别特定顺式作用元件来调节目标基因表达,进而影响作物表型[44]。木薯MeAHL基因启动子含有的顺式作用元件主要与光响应、植物激素(如MeJA、ABA、水杨酸、赤霉素和生长素)、干旱诱导、低温响应及伤口响应等生物学过程相关,表明MeAHL可能通过多种机制广泛参与木薯生长发育和环境适应性。转录组分析发现Clade A分支基因在根顶端分生组织、须根和贮藏根中表现出特异性高表达,而Clade B分支基因在有序的胚性愈伤组织、侧芽、松散的胚性愈伤组织和茎顶端分生组织中呈现显著高表达。该表达模式差异与木薯MeAHL家族2个分支基因结构分化一致,2个分支在各自进化过程中出现功能分化。本研究挖掘到3个可能与诱导木薯早期具有高度胚性分化能力相关的Clade B分支基因,可作为木薯组织培养和遗传转化效率改良候选基因,具有重要研究价值。ABA和PEG模拟干旱胁迫的转录组数据分析发现SC20504G00910在ABA和PEG处理后表达量均上升,表明其可能参与ABA信号通路介导的干旱响应。水稻OsAHL1的过表达显著提高了植株对干旱胁迫的耐受性,且杨树中的PtrAHL34在干旱胁迫下的表达模式和功能与OsAHL1相似[28]。该结果表明不同单双子叶植物AHL基因在响应干旱胁迫上具有功能保守性。Xam严重威胁木薯的生长发育。本研究发现响应Xam侵染的MeAHL基因,包括已报道的MeAHL17,为利用现在分子技术创制抗细菌性枯萎病木薯新种质提供新的目标基因资源。
本研究通过生物信息方法鉴定木薯基因组的MeAHL基因,并系统解析其基因组分布特征、基因结构特征、基因家族形成的进化机制及分支之间的分化,为理解木薯MeAHL基因家族起源和演化提供重要基础。本研究进一步通过大规模转录组数据集系统解析MeAHL基因在不同组织、不同生物胁迫和非生物胁迫条件下的基因表达模式,挖掘与木薯分化、抗病和抗逆相关的MeAHL基因。研究结果为理解木薯AHL家族起源演化及其在不同生物学过程的表达模式提供重要理论基础,为进一步深入研究MeAHL基因在木薯生长发育和逆境胁迫响应过程中的重要作用奠定基础。
  • 海南省自然科学基金联合项目(2021JJLH0034)
  • 国家自然科学基金项目(32460528)
  • “崖州湾”菁英人才科技专项项目(SCKJ-JYRC-2023-75)
参考文献 引证文献
排序方式:
[1]
BREDESON J V, LYONS J B, PROCHNIK S E, WU G A, HA C M, EDSINGERGONZALES E, GRIMWOOD J, SCHMUTZ J, RABBI I Y, EGESI C. Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity[J]. Nature Biotechnology, 2016, 34(5): 562-570.
[2]
NASSAR N M. Cassava, Manihot esculenta Crantz, genetic resources: origin of the crop, its evolution and relationships with wild relatives[J]. Genetics and Molecular Research, 2002, 1(4): 298-305.
[3]
PARMAR A, STURM B, HENSEL O. Crops that feed the world: production and improvement of cassava for food, feed, and industrial uses[J]. Food Security, 2017, 9: 907-927.
[4]
BAEYENS J, KANG Q, APPELS L, DEWIL R, LV Y Q, TAN T W. Challenges and opportunities in improving the production of bio-ethanol[J]. Progress in Energy and Combustion Science, 2015, 47: 60-88.
[5]
张鹏. 我国薯类基础研究的动态与展望[J]. 生物技术通报, 2015, 31(4): 65-71.
ZHANG P. Dynamics and prospects of basic research on tubers in China[J]. Biotechnology Bulletin, 2015, 31(4): 65-71. (in Chinese)
[6]
DEVI B, KUMAR M N, CHUTIA M, BHATTACHARYYA N. Abiotic and biotic stress challenges of cassava in changing climate and strategies to overcome: a review[J]. Scientia Horticulturae, 2022, 305: 111432.
[7]
杨莉, 曲茜彤, 陈子航, 邹婷婷, 王全华, 王小丽. 菠菜AT-hook基因家族鉴定与水杨酸响应表达谱分析[J]. 植物学报, 2025, 60(3): 377-392.
YANG L, QU X T, CHEN Z H, ZOU T T, WANG Q H, WANG X L. Identification of the AT-hook gene family and analysis of salicylic acid - responsive expression profiles in spinach[J]. Acta Botanica Sinica, 2025, 60(3): 377-392. (in Chinese)
[8]
ZHAO J F, FAVERO D S, PENG H, NEFF M M. Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain[J]. Proceedings of the National Academy of Sciences, 2013, 110(48): E4688-E4697.
[9]
ZHAO J F, FAVERO D S, QIU J W, ROALSON E H, NEFF M M. Insights into the evolution and diversification of the AT-hook motif nuclear localized gene family in land plants[J]. BMC Plant Biology, 2014, 14: 1-19.
[10]
FAVERO D S, KAWAMURA A, SHIBATA M, TAKEBAYASHI A, JUNG J H, SUZUKI T, JAEGER K E, ISHIDA T, IWASE A, WIGGE P A, NEFF M M, SUGIMOTO K. AT-Hook transcription factors restrict petiole growth by antagonizing PIFs[J]. Current Biology, 2020, 30(8): 1454-1466.
[11]
ŠIRL M, ŠNAJDROVÁ T, GUTIÉRREZ-ALANÍS D, DUBROVSKY J G, VIELLE-CALZADA J P, KULICH I, SOUKUP A. At-Hook motif nuclear localised protein 18 as a novel modulator of root system architecture[J]. International Journal of Molecular Sciences, 2020, 21(5): 1886.
[12]
XIAO C W, CHEN F L, YU X H, LIN C T, FU Y F. Overexpression of an AT-hook gene, AHL22, delays flowering and inhibits the elongation of the hypocotyl in Arabidopsis thaliana[J]. Plant Molecular Biology, 2009, 71(1/2): 39-50.
[13]
JACQUES C N, FAVERO D S, KAWAMURA A, SUZUKI T, SUGIMOTO K, NEFF M M. SUPPRESSOR OF PHYTOCHROME B-4#3 reduces the expression of PIF-activated genes and increases expression of growth repressors to regulate hypocotyl elongation in short days[J]. BMC Plant Biology, 2022, 22(1): 1-19.
[14]
ZHOU J, WANG X, LEE J Y, LEE J Y. Cell-to-cell movement of two interacting AT-hook factors in Arabidopsis root vascular tissue patterning[J]. The Plant Cell, 2013, 25(1): 187-201.
[15]
YUN J, KIM Y S, JUNG J H, SEO P J, PARK C M. The AT-hook motif-containing protein AHL22 regulates flowering initiation by modifying FLOWERING LOCUS T chromatin in Arabidopsis[J]. The Journal of Biological Chemistry, 2012, 287(19): 15307-15316.
[16]
TAYENGWA R, SHARMA KOIRALA P S, PIERCE C F, WERNER B E, NEFF M M. Overexpression of AtAHL20 causes delayed flowering in Arabidopsis via repression of FT expression[J]. BMC Plant Biology, 2020, 20(1): 559.
[17]
ZHOU Y S, ZHANG X M, CHEN J, GUO X P, WANG H Y, ZHEN W B, ZHANG J L, HU Z B, ZHANG X B, BOTELLA J R, ITO T, GUO S. Overexpression of AHL9 accelerates leaf senescence in Arabidopsis thaliana[J]. BMC Plant Biology, 2022, 22(1): 248.
[18]
CAI G Q, KIM S C, LI J W, ZHOU Y M, WANG X M. Transcriptional regulation of lipid catabolism during seedling establishment[J]. Molecular Plant, 2020, 13(7): 984-1000.
[19]
JEONG H N, SUN H J, ZUO Z F, LEE D H, LEE H Y. Overexpression of ATHG1/AHL23 and ATPG3/AHL20, Arabidopsis AT-hook motif nuclear-localized genes, confers salt tolerance in transgenic Zoysia japonica[J]. Plant Biotechnology Reports, 2020, 6: 351-361.
[20]
ZHOU L G, LIU Z C, LIU Y H, KONG D Y, LI T F, YU S W, MEI H W, XU X Y, LIU H Y, CHEN L, LUO L J. A novel gene OsAHL1 improves both drought avoidance and drought tolerance in rice[J]. Scientific Reports, 2016, 6: 30264.
[21]
LI Y, JIANG L, MO W, WANG L H, ZHANG L, CAO Y P. AHLs' life in plants: especially their potential roles in responding to Fusarium wilt and repressing the seed oil accumulation[J]. International Journal of Biological Macromolecules, 2022, 208: 509-519.
[22]
ZHANG W M, CHENG X Z, FANG D, CAO J. AT-HOOK MOTIF NUCLEAR LOCALIZED (AHL) proteins of ancient origin radiate new functions[J]. International Journal of Biological Macromolecules, 2022, 214: 290-300.
[23]
KUMAR A, SINGH S, MISHRA A. Genome-wide identification and analyses of the AHL gene family in rice (Oryza sativa)[J]. 3 Biotech, 2023, 13(7): 248.
[24]
WANG L Y, LI T T, LIU N, LIU X C. Identification of tomato AHL gene families and functional analysis their roles in fruit development and abiotic stress response[J]. Plant Physiology and Biochemistry, 2023, 202: 107931.
[25]
WANG M, CHEN B W, ZHOU W, XIE L N, WANG L S, ZHANG Y L, ZHANG Q Z. Genome-wide identification and expression analysis of the AT-hook motif nuclear localized gene family in soybean[J]. BMC Genomics, 2021, 22(1): 361.
[26]
ZHAO L J, YOUJUN L, CHEN W, YAO J B, LI Y. Genome-wide identification and analyses of the AHL gene family in cotton (Gossypium)[J]. BMC Genomics, 2020, 21(1): 69.
[27]
JIA P, LIU J L, YAN R, YANG K Y, DONG Q, LUAN H, ZHANG X M, LI H, GUO S, QI G. Systematical characterization of the AT-Hook gene family in Juglans regia L. and the functional analysis of the JrAHL2 in Flower induction and hypocotyl elongation[J]. International Journal of Molecular Sciences, 2023, 24(8): 7244.
[28]
WANG H Z, LENG X, YANG J, ZHANG M Q, ZENG M Z, XU X M, WANG F D, LI C H. Comprehensive analysis of AHL gene family and their expression under drought stress and ABA treatment in Populus trichocarpa[J]. PeerJ, 2021, 9: e10932.
[29]
MACHAJ G, GRZEBELUS D. Characteristics of the AT-Hook motif containing nuclear localized (AHL) genes in carrot provides insight into their role in plant growth and storage root development[J]. Genes, 2021, 12(5): 764.
[30]
HU W, JI C M, LIANG Z, YE J Q, OU W J, DING Z H, ZHOU G, TIE W W, YAN Y, YANG J H. Resequencing of 388 cassava accessions identifies valuable loci and selection for variation in heterozygosity[J]. Genome Biology, 2021, 22(1): 1-23.
[31]
WANG X T, TANG X N, ZHANG Y W, GUO Y Q, YAO Y, LI R M, WANG Y J, LIU J, GUO J C. Promoter of cassava MeAHL31 responds to diverse abiotic stresses and hormone signals in transgenic Arabidopsis[J]. International Journal of Molecular Sciences, 2024, 25(14): 7714.
[32]
CHEN C J, CHEN H, ZHANG Y, THOMAS H R, FRANK M H, HE Y H, XIA R. TBtools: an integrative toolkit developed for interactive analyses of big biological data[J]. Molecular Plant, 2020, 13(8): 1194-1202.
[33]
QIAO X, LI Q H, YIN H, QI K J, LI L T, WANG R Z, ZHANG S L, PATERSON A H. Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants[J]. Genome Biology, 2019, 20(1): 38.
[34]
BAILEY T L, BODEN M, BUSKE F A, FRITH M, GRANT C E, CLEMENTI L, REN J, LI W W, NOBLE W S. MEME SUITE: tools for motif discovery and searching[J]. Nucleic Acids Research, 2009, 37(suppl. 2): W202-W208.
[35]
CHEN S F, ZHOU Y Q, CHEN Y R, GU J. fastp: an ultrafast all-in-one FASTQ preprocessor[J]. Bioinformatics, 2018, 34(17): i884-i890.
[36]
KIM D, PAGGI J M, PARK C, BENNETT C, SALZBERG S L. Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype[J]. Nature Biotechnology, 2019, 37(8): 907-915.
[37]
PERTEA M, KIM D, PERTEA G M, LEEK J T, SALZBERG S L. Transcript-level expression analysis of RNA-seq experiments with HISAT, StringTie and Ballgown[J]. Nature Protocols, 2016, 11(9): 1650-1667.
[38]
LOVE M I, HUBER W, ANDERS S. Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2[J]. Genome Biology, 2014, 15(12): 550.
[39]
SHANNON P, MARKIEL A, OZIER O, BALIGA N S, WANG J T, RAMAGE D, AMIN N, SCHWIKOWSKI B, IDEKER T. Cytoscape: a software environment for integrated models of biomolecular interaction networks[J]. Genome Research, 2003, 13(11): 2498-2504.
[40]
MARTINČOVÁ M, SOUKUP A. Twenty years of AT-HOOK MOTIF NUCLEAR LOCALIZED (AHL) gene family research–their potential in crop improvement[J]. Current Plant Biology, 2025, 42: 100460.
[41]
LAWTON-RAUH A. Evolutionary dynamics of duplicated genes in plants[J]. Molecular Phylogenetics and Evolution, 2003, 29(3): 396-409.
[42]
XIAO L, CHENG D, OU W, CHEN X, RABBI I Y, WANG W Q, LI K M, YAN H B. Advancements and strategies of genetic improvement in cassava (Manihot esculenta Crantz): from conventional to genomic approaches[J]. Horticulture Research, 2025, 12(3): uhae341.
[43]
HU W, JI C M, SHI H T, LIANG Z, DING Z H, YE J Q, OU W J, ZHOU G, TIE W W, YAN Y. Allele-defined genome reveals biallelic differentiation during cassava evolution[J]. Molecular Plant, 2021, 14(6): 851-854.
[44]
MARAND A P, EVELAND A L, KAUFMANN K, SPRINGER N M. cis-Regulatory elements in plant development, adaptation, and evolution[J]. Annual Review of Plant Biology, 2023, 74(1): 111-137.
2025年第46卷第10期
PDF下载
118
59
引用本文
BibTeX
文章信息
doi: 10.3969/j.issn.1000-2561.2025.10.002
  • 接收时间:2025-05-26
  • 首发时间:2026-03-09
  • 出版时间:2025-10-25
补充材料
相关文章
文章信息
作者
出版历史
  • 收稿日期:2025-05-26
  • 录用日期:2025-06-03
基金
海南省自然科学基金联合项目(2021JJLH0034)
国家自然科学基金项目(32460528)
“崖州湾”菁英人才科技专项项目(SCKJ-JYRC-2023-75)
作者信息
    1.中国热带农业科学院三亚研究院,海南三亚 572025
    2.中国热带农业科学院热带生物技术研究所,海南海口 571101
    3.河南农业大学农学院,河南郑州 450046
    4.中国热带农业科学院椰子研究所,海南文昌 571339

通讯作者:

**纪长绵,E-mail:;
胡伟,E-mail:
参考文献
分享链接
https://castjournals.cast.org.cn/joweb/rdzwxb/CN/10.3969/j.issn.1000-2561.2025.10.002
分享至
全文二维码

扫描看全文

引用本文
BibTeX
本文的引用情况
2种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
关闭全屏