Article(id=1237814983862580082, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237814978405790425, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2025.10.002, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1748188800000, receivedDateStr=2025-05-26, revisedDate=null, revisedDateStr=null, acceptedDate=1748880000000, acceptedDateStr=2025-06-03, onlineDate=1773047689642, onlineDateStr=2026-03-09, pubDate=1761321600000, pubDateStr=2025-10-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1773047689642, onlineIssueDateStr=2026-03-09, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1773047689642, creator=13701087609, updateTime=1773047689642, updator=13701087609, issue=Issue{id=1237814978405790425, tenantId=1146029695717560320, journalId=1235980609244409860, year='2025', volume='46', issue='10', pageStart='2287', pageEnd='2547', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=1, specialIssue=null, createTime=1773047688342, creator=13701087609, updateTime=1773049212967, updator=13701087609, preIssue=null, nextIssue=null, ext={EN=IssueExt(id=1237821373213635442, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237814978405790425, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1237821373213635443, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237814978405790425, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null}, startPage=2299, endPage=2313, ext={EN=ArticleExt(id=1237814984131015560, articleId=1237814983862580082, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Genome-wide Identification, Expression Profiling and Network Analysis of AT-hook Gene Family in Cassava, columnId=1236256430337085821, journalTitle=Chinese Journal of Tropical Crops, columnName=Omics & Biotechnology, runingTitle=null, highlight=null, articleAbstract=
The AT-hook Motif Nuclear Localized (AHL) protein family is known for its pivotal roles in plant growth regulation, developmental patterning, and stress signal transduction. Although the gene family has been studied in various plant species, the genomic characteristics, evolutionary mechanism, and expression profiles of the AHL family in cassava (Manihot esculenta) remain unexplored. In this study, we comprehensively investigated the evolutionary features and biological response of the MeAHL gene family through genome-wide identification, phylogenetic analysis, structural characterization, and large-scale transcriptomes based on the cassava SC205 reference genome. We identified 41 putative members through genome-wide identification. Physicochemical property analysis showed that all 41 MeAHLs were hydrophilic proteins, and 40 of them were unstable proteins, with the number of amino acids generally ranging from 188 to 446 aa. Phylogenetic analysis indicated that the MeAHL family members could be divided into two clades, Clade A and Clade B. Two MeAHL gene clusters were located in the distal telomeric regions of chromosomes Chr01 and Chr02, respectively. Replication type analysis revealed that the evolution of MeAHLs was mainly driven by whole-genome duplication (WGD) and dispersed duplication (DSD), with the Ka/Ks values <1. Evolutionary mechanism analysis indicated that whole-genome duplication (WGD) primarily drove the MeAHL gene family expansion. Gene structure analysis showed that MeAHL genes were mainly composed of 1‒10 exons. Analysis of conserved domains and motifs showed that all MeAHLs had the PPC/DUF296 domain and AT-hook motif. Members of Clade A generally contained one Type-I AT-hook motif. Among members of Clade B, except for SC20508G13380 and SC20509G13950, which contained one Type-II AT-hook motif, most members contained two AT-hooks (Type-I and Type-II). Cis-acting element analysis via PlantCARE showed that the cis-acting elements related to light response were the most abundant in MeAHLs, such as Box 4, G-box, and they also contained elements responsive to hormones, biotic stresses, and abiotic stresses, such as ABRE, MBS, W-box, and TC-rich repeats. Tissue-specific expression profiling revealed distinct expression patterns between two clades of MeAHL across 11 different tissues. Stress transcriptome analysis demonstrated significant responses of specific MeAHLs to drought (ABA/PEG treatments), cassava bacterial blight (Xanthomonas axonopodis pv. manihotis), and mite infestation, showing clade-specific regulatory patterns. Protein-protein interaction (PPI) network prediction suggested some MeAHLs formed functional modules with bHLH, NAC, ARF, and NB-LRR proteins involved in plant development and stress responses. This study would provide the systematic characterization of AHL family evolution and functional diversification in cassava, offering theoretical foundations for molecular breeding applications.
, correspAuthors=Changmian JI, Wei HU, authorNote=null, correspAuthorsNote=
, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, authorCompany=null, fund=null, authors=null, authorsList=Yu WANG, Yunfei ZHENG, Haixu ZHAO, Meiying LI, Zhengnan XIE, Xiaoxue YE, Changmian JI, Wei HU), CN=ArticleExt(id=1237814987369017441, articleId=1237814983862580082, tenantId=1146029695717560320, journalId=1235980609244409860, language=CN, title=木薯AT-hook基序核定位基因家族的全基因组鉴定、表达谱及调控网络分析, columnId=1236256430517440904, journalTitle=热带作物学报, columnName=组学与生物技术, runingTitle=null, highlight=null, articleAbstract=
AT-Hook基序核定位(AT-hook Motif Nuclear Localized,AHL)蛋白作为植物中广泛存在的调控因子,在植物生长发育调控和逆境胁迫中发挥重要作用。尽管该基因家族在多个植物中已被研究,但木薯(Manihot esculenta)AHL家族的基因组学特征、进化机制及其表达调控模式仍未见报道。本研究基于木薯SC205的参考基因组,通过全基因组鉴定、系统进化分析、基因结构解析以及大规模转录组数据整合,系统揭示MeAHL家族的进化特征、基因表达模式和调控模块。研究共鉴定41个MeAHL基因,其中40个为不稳定蛋白,氨基酸数量介于188~446 aa之间。系统进化分析将其分为Clade A和Clade B两个分支,并在Chr01和Chr02染色体的远端粒区域发现2个MeAHL基因簇。进化机制分析表明全基因组复制(WGD)事件是驱动该家族扩张的主要进化动力。结构域分析显示MeAHL基因含有PPC/DUF296结构域和AT-hook基序:Clade A基因含有单个Type-I AT-hook基序,而Clade B基因多具有Type-I和Type-II双基序。启动子顺式作用元件分析揭示MeAHL基因启动子区富集光响应元件、植物激素响应元件以及生物/非生物胁迫响应元件,暗示其功能多样性。多组织转录组分析显示MeAHL两个分支在11种不同组织中呈现差异表达模式,暗示其亚家族功能分化。非生物/生物胁迫转录组分析表明,部分MeAHL对干旱(ABA/PEG处理)、木薯细菌性萎蔫病(Xanthomonas axonopodis pv. manihotis)和螨虫侵害等胁迫具有显著响应,且呈现分支特异性的表达模式。蛋白互作网络分析显示部分MeAHL可与bHLH、NAC、ARF、NB-LRR等参与发育调控和逆境响应相关的蛋白形成功能模块。本研究结果系统解析MeAHL基因家族进化特征与亚家族功能分化,及其响应不同生物学过程的基因表达模式和部分MeAHL的调控模块,为利用该家族基因进行木薯分子育种设计提供理论依据。
, correspAuthors=纪长绵, 胡伟, authorNote=null, correspAuthorsNote=
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*同等贡献作者:郑芸霏(1999—),女,硕士研究生,研究方向:生物信息学。
王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种
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1, 2, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831255052571330, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831254909964985, language=CN, stringName=王雨, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
1, 2, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio={"content":"
王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种
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王雨(1987—),女,博士,副研究员,研究方向:木薯功能基因组与分子育种
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1, 3, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
3. College of Agronomy, Henan Agricultural University, Zhengzhou, Henan 450046, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831255308423887, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255136457417, language=CN, stringName=郑芸霏, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
1, 3, *, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
3.河南农业大学农学院,河南郑州 450046, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254733804206, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254742192814, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254733804206, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3. College of Agronomy, Henan Agricultural University, Zhengzhou, Henan 450046, China), AuthorCompanyExt(id=1237831254746387119, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254733804206, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=3.河南农业大学农学院,河南郑州 450046)])]), Author(id=1237831255362949845, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=2, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831255421670105, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255362949845, language=EN, stringName=Haixu ZHAO, firstName=Haixu, middleName=null, lastName=ZHAO, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
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1, 2, address=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China
2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1237831257128751847, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831255576859360, language=CN, stringName=李美英, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
1, 2, address=1.中国热带农业科学院三亚研究院,海南三亚 572025
2.中国热带农业科学院热带生物技术研究所,海南海口 571101, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null)}, companyList=[AuthorCompany(id=1237831254549254818, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254553449122, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1. Sanya Research Institute, Chinese Academy of Tropical Agricultural Sciences, Sanya, Hainan 572025, China), AuthorCompanyExt(id=1237831254561837732, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254549254818, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=1.中国热带农业科学院三亚研究院,海南三亚 572025)]), AuthorCompany(id=1237831254633140905, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, xref=null, ext=[AuthorCompanyExt(id=1237831254637335210, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2. Institute of Tropical Bioscience and Biotechnology, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan 571101, China), AuthorCompanyExt(id=1237831254645723819, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, companyId=1237831254633140905, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=2.中国热带农业科学院热带生物技术研究所,海南海口 571101)])]), Author(id=1237831257271358186, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, orderNo=4, firstName=null, middleName=null, lastName=null, nameCn=null, orcid=null, stid=null, country=null, authorPic=null, dead=0, email=null, emailSecond=null, emailThird=null, correspondingAuthor=0, authorType=1, ext={EN=AuthorExt(id=1237831257359438574, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, authorId=1237831257271358186, language=EN, stringName=Zhengnan XIE, firstName=Zhengnan, middleName=null, lastName=XIE, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=
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Phylogenetic tree of AHL gene family in cassava and five closely related species, figureFileSmall=2qh3PgFZXwK9WK6uCRYCsQ==, figureFileBig=U5+U0vLHCzzvwqTsr4Hmeg==, tableContent=null), ArticleFig(id=1237831259284624180, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图1, caption=
木薯与其他5个近缘物种AHL家族的系统发育树分析, figureFileSmall=2qh3PgFZXwK9WK6uCRYCsQ==, figureFileBig=U5+U0vLHCzzvwqTsr4Hmeg==, tableContent=null), ArticleFig(id=1237831259372704567, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 2, caption=
Chromosome localization of cassava MeAHL gene family, figureFileSmall=/nAvdzdg+roVSNuR9tnFWw==, figureFileBig=cRY7Ml9JTUIoupmQz1Jf9A==, tableContent=null), ArticleFig(id=1237831259448202042, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图2, caption=
MeAHL基因家族成员的染色体定位, figureFileSmall=/nAvdzdg+roVSNuR9tnFWw==, figureFileBig=cRY7Ml9JTUIoupmQz1Jf9A==, tableContent=null), ArticleFig(id=1237831259527893821, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 3, caption=
Duplication type analysis of MeAHL gene family in cassava, figureFileSmall=qf8zKVkr8q4auJsQM+UHbw==, figureFileBig=FYR+niS0kJDORK+xkYvmbA==, tableContent=null), ArticleFig(id=1237831259590808384, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图3, caption=
MeAHL基因家族复制类型分析, figureFileSmall=qf8zKVkr8q4auJsQM+UHbw==, figureFileBig=FYR+niS0kJDORK+xkYvmbA==, tableContent=null), ArticleFig(id=1237831259653722947, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 4, caption=
Analysis of MeAHL gene structures in cassava, figureFileSmall=ifnd4x1Pgp8jC4zOJR1/HQ==, figureFileBig=hArabKAFab+sgPYYc5K07Q==, tableContent=null), ArticleFig(id=1237831259733414726, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图4, caption=
MeAHL基因结构分析, figureFileSmall=ifnd4x1Pgp8jC4zOJR1/HQ==, figureFileBig=hArabKAFab+sgPYYc5K07Q==, tableContent=null), ArticleFig(id=1237831259787940680, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 5, caption=
Analysis of MeAHL protein conserved domain in cassava, figureFileSmall=NxyrA4b/iG0NXxxhwCDFVQ==, figureFileBig=G+Z3VEAU+0G/XPcGbgC0YQ==, tableContent=null), ArticleFig(id=1237831259863438155, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图5, caption=
MeAHL蛋白保守结构域分析, figureFileSmall=NxyrA4b/iG0NXxxhwCDFVQ==, figureFileBig=G+Z3VEAU+0G/XPcGbgC0YQ==, tableContent=null), ArticleFig(id=1237831259917964110, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 6, caption=
Analysis of MeAHL protein conserved motifs in cassava, figureFileSmall=cWMU+NwlSrLLWA3JNRDYWA==, figureFileBig=55f8cT4kiTU81tnMNUCyIg==, tableContent=null), ArticleFig(id=1237831259980878671, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图6, caption=
MeAHL蛋白保守基序分析, figureFileSmall=cWMU+NwlSrLLWA3JNRDYWA==, figureFileBig=55f8cT4kiTU81tnMNUCyIg==, tableContent=null), ArticleFig(id=1237831260043793234, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 7, caption=
Analysis of cis-acting elements in the promoter regions of cassava MeAHL family genes, figureFileSmall=o9Auw9ctdlxSSg5giyRPlg==, figureFileBig=Y08l4p0RRE55B9O8AKVJ+A==, tableContent=null), ArticleFig(id=1237831260106707795, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图7, caption=
MeAHL家族基因启动子区顺式作用元件分析, figureFileSmall=o9Auw9ctdlxSSg5giyRPlg==, figureFileBig=Y08l4p0RRE55B9O8AKVJ+A==, tableContent=null), ArticleFig(id=1237831260186399574, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 8, caption=
Expression profiles of MeAHL family members among eleven tissues of cassavaA. Expression heatmap of MeAHL genes belonging to Clade A subfamily. B. Expression heatmap of MeAHL genes belonging to Clade B subfamily.
, figureFileSmall=QMlkoRXI1VtDBCrPLBFi7g==, figureFileBig=ZEJT9lrkprNBNWr8awSZdw==, tableContent=null), ArticleFig(id=1237831261625045847, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图8, caption=
木薯MeAHL基因家族成员在11种组织中的表达分析A. Clade A分支基因在不同组织中表达量热图;B. Clade B分支基因在不同组织中的表达量热图。
, figureFileSmall=QMlkoRXI1VtDBCrPLBFi7g==, figureFileBig=ZEJT9lrkprNBNWr8awSZdw==, tableContent=null), ArticleFig(id=1237831261700543321, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 9, caption=
Expression analysis of AHL genes in cassava after drought treatment, figureFileSmall=kOfsTPkORVnfNvyY8NSjgw==, figureFileBig=vkACm3X45vf/LsQBlyvq5w==, tableContent=null), ArticleFig(id=1237831261809595227, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图9, caption=
MeAHL基因家族成员在干旱处理后的表达分析, figureFileSmall=kOfsTPkORVnfNvyY8NSjgw==, figureFileBig=vkACm3X45vf/LsQBlyvq5w==, tableContent=null), ArticleFig(id=1237831261885092700, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 10, caption=
Expression profiles of MeAHL genes in cassava stem under Xam infection, figureFileSmall=Bo2zLOlTc2KTRPVa015MnQ==, figureFileBig=0RSxo4knaunnfIXacOI2AQ==, tableContent=null), ArticleFig(id=1237831261985755999, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图10, caption=
MeAHL基因家族成员在Xam侵染后的木薯茎组织表达分析, figureFileSmall=Bo2zLOlTc2KTRPVa015MnQ==, figureFileBig=0RSxo4knaunnfIXacOI2AQ==, tableContent=null), ArticleFig(id=1237831262048670562, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 11, caption=
Expression profiles of AHL genes in leaves of cassava under mite infestation, figureFileSmall=K2sOw99VuaWHy1IVvtHlSA==, figureFileBig=XtuGn7i4VIUlJqSNYuyyNQ==, tableContent=null), ArticleFig(id=1237831262107390821, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图11, caption=
MeAHL基因家族成员在螨虫侵害后的叶片组织表达分析, figureFileSmall=K2sOw99VuaWHy1IVvtHlSA==, figureFileBig=XtuGn7i4VIUlJqSNYuyyNQ==, tableContent=null), ArticleFig(id=1237831262187082599, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Fig. 12, caption=
Analysis of AHL protein interaction network in cassava, figureFileSmall=3gFV4YVIYSA+thXgomh4vA==, figureFileBig=o34Z5eIagETDTcErCEAEPA==, tableContent=null), ArticleFig(id=1237831262279357289, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=图12, caption=
MeAHL基因家族成员蛋白互作网络分析, figureFileSmall=3gFV4YVIYSA+thXgomh4vA==, figureFileBig=o34Z5eIagETDTcErCEAEPA==, tableContent=null), ArticleFig(id=1237831262354854763, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Tab. 1, caption=
Basic information of MeAHL proteins
, figureFileSmall=null, figureFileBig=null, tableContent=
序号 No. | 基因 ID Gene ID | 氨基酸数量 Amino acid(aa) | 分子量 Molecular weight/Da | 等电点 Isoelectric point | 不稳定指数 Instability index | 总平均亲水性 GRAVY | 亚细胞定位 Subcellular localization |
|---|
| 1 | SC20501G06620 | 347 | 35 781.71 | 10.45 | 47.86 | ‒0.271 | 细胞核 |
| 2 | SC20501G07550 | 294 | 31 094.68 | 6.84 | 54.78 | ‒0.503 | 细胞核 |
| 3 | SC20501G07590 | 353 | 36 140.96 | 9.49 | 55.95 | ‒0.228 | 叶绿体 |
| 4 | SC20501G12870 | 268 | 28 145.19 | 9.40 | 47.64 | ‒0.128 | 内质网 内质网_质膜 |
| 5 | SC20501G15380 | 356 | 37 239.94 | 8.90 | 44.55 | ‒0.345 | 细胞核 |
| 6 | SC20501G17460 | 282 | 29 570.50 | 9.13 | 50.60 | ‒0.211 | 细胞质 |
| 7 | SC20501G24820 | 340 | 34 831.28 | 10.11 | 44.31 | ‒0.248 | 叶绿体 |
| 8 | SC20501G25490 | 297 | 31 454.18 | 6.55 | 56.39 | ‒0.534 | 细胞核 |
| 9 | SC20501G25540 | 340 | 35 375.92 | 8.72 | 39.52 | ‒0.220 | 叶绿体 |
| 10 | SC20502G02120 | 347 | 36 031.59 | 9.88 | 52.72 | ‒0.388 | 叶绿体;质膜 |
| 11 | SC20502G02960 | 293 | 31 032.70 | 6.80 | 53.81 | ‒0.473 | 细胞核 |
| 12 | SC20502G03000 | 384 | 40 067.73 | 9.37 | 44.96 | 0.002 | 质膜 |
| 13 | SC20502G08210 | 1006 | 109 150.71 | 6.15 | 49.84 | ‒0.467 | 细胞核 |
| 14 | SC20502G10750 | 358 | 37 100.50 | 9.17 | 49.04 | ‒0.320 | 细胞核 |
| 15 | SC20502G12840 | 279 | 29 965.74 | 4.94 | 49.27 | ‒0.278 | 细胞质 |
| 16 | SC20502G13390 | 312 | 32 669.38 | 6.89 | 58.06 | ‒0.491 | 内质网 |
| 17 | SC20503G15750 | 302 | 31 177.09 | 5.88 | 50.52 | ‒0.227 | 细胞外 |
| 18 | SC20504G00910 | 353 | 36 101.59 | 5.05 | 46.30 | ‒0.239 | 细胞核 |
| 19 | SC20505G03450 | 340 | 34 961.57 | 10.11 | 41.28 | ‒0.254 | 细胞核 |
| 20 | SC20505G04200 | 307 | 32 597.63 | 6.50 | 58.32 | ‒0.461 | 线粒体 |
| 21 | SC20505G04360 | 325 | 33 760.20 | 9.41 | 46.14 | ‒0.274 | 线粒体 |
| 22 | SC20505G12810 | 290 | 29 120.32 | 9.16 | 48.71 | ‒0.293 | 细胞核 |
| 23 | SC20505G12910 | 375 | 37 285.77 | 10.08 | 50.04 | ‒0.244 | 细胞核 |
| 24 | SC20506G12640 | 386 | 40 564.04 | 9.31 | 40.63 | ‒0.311 | 叶绿体 |
| 25 | SC20507G11650 | 301 | 31 746.00 | 5.26 | 57.58 | ‒0.461 | 叶绿体 |
| 26 | SC20508G02230 | 390 | 40 087.53 | 6.18 | 53.45 | ‒0.350 | 叶绿体 |
| 27 | SC20508G13380 | 351 | 36 347.45 | 8.80 | 49.67 | ‒0.455 | 细胞核 |
| 28 | SC20508G13400 | 285 | 29 575.05 | 5.89 | 50.49 | ‒0.489 | 叶绿体 |
| 29 | SC20509G05090 | 364 | 37 761.17 | 9.17 | 51.24 | ‒0.402 | 细胞核 |
| 30 | SC20509G13920 | 288 | 29 961.50 | 5.50 | 54.54 | ‒0.480 | 细胞核 |
| 31 | SC20509G13950 | 377 | 39 855.75 | 10.07 | 46.88 | ‒0.495 | 细胞核 |
| 32 | SC20510G02590 | 337 | 35 685.13 | 5.55 | 62.23 | ‒0.740 | 细胞核 |
| 33 | SC20511G15260 | 341 | 35 333.68 | 5.57 | 50.24 | ‒0.209 | 细胞核 |
| 34 | SC20514G03200 | 421 | 44 875.56 | 8.62 | 41.43 | ‒0.350 | 细胞核 |
| 35 | SC20515G03600 | 188 | 18 645.94 | 5.19 | 45.72 | 0.077 | 内质网 |
| 36 | SC20515G15920 | 297 | 30 795.28 | 6.03 | 45.86 | ‒0.344 | 细胞质 |
| 37 | SC20515G15930 | 371 | 38 266.75 | 9.51 | 57.11 | ‒0.444 | 细胞核 |
| 38 | SC20517G01110 | 419 | 43 832.83 | 9.80 | 60.72 | ‒0.565 | 细胞核 |
| 39 | SC20517G01140 | 377 | 40 278.69 | 9.24 | 45.25 | ‒0.194 | 线粒体 |
| 40 | SC20518G00200 | 446 | 45 545.07 | 9.85 | 55.40 | ‒0.301 | 线粒体 |
| 41 | SC20518G05780 | 315 | 32 853.94 | 8.36 | 57.93 | ‒0.355 | 细胞质 |
), ArticleFig(id=1237831262442935149, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=表1, caption=
木薯MeAHL蛋白基本信息
, figureFileSmall=null, figureFileBig=null, tableContent=
序号 No. | 基因 ID Gene ID | 氨基酸数量 Amino acid(aa) | 分子量 Molecular weight/Da | 等电点 Isoelectric point | 不稳定指数 Instability index | 总平均亲水性 GRAVY | 亚细胞定位 Subcellular localization |
|---|
| 1 | SC20501G06620 | 347 | 35 781.71 | 10.45 | 47.86 | ‒0.271 | 细胞核 |
| 2 | SC20501G07550 | 294 | 31 094.68 | 6.84 | 54.78 | ‒0.503 | 细胞核 |
| 3 | SC20501G07590 | 353 | 36 140.96 | 9.49 | 55.95 | ‒0.228 | 叶绿体 |
| 4 | SC20501G12870 | 268 | 28 145.19 | 9.40 | 47.64 | ‒0.128 | 内质网 内质网_质膜 |
| 5 | SC20501G15380 | 356 | 37 239.94 | 8.90 | 44.55 | ‒0.345 | 细胞核 |
| 6 | SC20501G17460 | 282 | 29 570.50 | 9.13 | 50.60 | ‒0.211 | 细胞质 |
| 7 | SC20501G24820 | 340 | 34 831.28 | 10.11 | 44.31 | ‒0.248 | 叶绿体 |
| 8 | SC20501G25490 | 297 | 31 454.18 | 6.55 | 56.39 | ‒0.534 | 细胞核 |
| 9 | SC20501G25540 | 340 | 35 375.92 | 8.72 | 39.52 | ‒0.220 | 叶绿体 |
| 10 | SC20502G02120 | 347 | 36 031.59 | 9.88 | 52.72 | ‒0.388 | 叶绿体;质膜 |
| 11 | SC20502G02960 | 293 | 31 032.70 | 6.80 | 53.81 | ‒0.473 | 细胞核 |
| 12 | SC20502G03000 | 384 | 40 067.73 | 9.37 | 44.96 | 0.002 | 质膜 |
| 13 | SC20502G08210 | 1006 | 109 150.71 | 6.15 | 49.84 | ‒0.467 | 细胞核 |
| 14 | SC20502G10750 | 358 | 37 100.50 | 9.17 | 49.04 | ‒0.320 | 细胞核 |
| 15 | SC20502G12840 | 279 | 29 965.74 | 4.94 | 49.27 | ‒0.278 | 细胞质 |
| 16 | SC20502G13390 | 312 | 32 669.38 | 6.89 | 58.06 | ‒0.491 | 内质网 |
| 17 | SC20503G15750 | 302 | 31 177.09 | 5.88 | 50.52 | ‒0.227 | 细胞外 |
| 18 | SC20504G00910 | 353 | 36 101.59 | 5.05 | 46.30 | ‒0.239 | 细胞核 |
| 19 | SC20505G03450 | 340 | 34 961.57 | 10.11 | 41.28 | ‒0.254 | 细胞核 |
| 20 | SC20505G04200 | 307 | 32 597.63 | 6.50 | 58.32 | ‒0.461 | 线粒体 |
| 21 | SC20505G04360 | 325 | 33 760.20 | 9.41 | 46.14 | ‒0.274 | 线粒体 |
| 22 | SC20505G12810 | 290 | 29 120.32 | 9.16 | 48.71 | ‒0.293 | 细胞核 |
| 23 | SC20505G12910 | 375 | 37 285.77 | 10.08 | 50.04 | ‒0.244 | 细胞核 |
| 24 | SC20506G12640 | 386 | 40 564.04 | 9.31 | 40.63 | ‒0.311 | 叶绿体 |
| 25 | SC20507G11650 | 301 | 31 746.00 | 5.26 | 57.58 | ‒0.461 | 叶绿体 |
| 26 | SC20508G02230 | 390 | 40 087.53 | 6.18 | 53.45 | ‒0.350 | 叶绿体 |
| 27 | SC20508G13380 | 351 | 36 347.45 | 8.80 | 49.67 | ‒0.455 | 细胞核 |
| 28 | SC20508G13400 | 285 | 29 575.05 | 5.89 | 50.49 | ‒0.489 | 叶绿体 |
| 29 | SC20509G05090 | 364 | 37 761.17 | 9.17 | 51.24 | ‒0.402 | 细胞核 |
| 30 | SC20509G13920 | 288 | 29 961.50 | 5.50 | 54.54 | ‒0.480 | 细胞核 |
| 31 | SC20509G13950 | 377 | 39 855.75 | 10.07 | 46.88 | ‒0.495 | 细胞核 |
| 32 | SC20510G02590 | 337 | 35 685.13 | 5.55 | 62.23 | ‒0.740 | 细胞核 |
| 33 | SC20511G15260 | 341 | 35 333.68 | 5.57 | 50.24 | ‒0.209 | 细胞核 |
| 34 | SC20514G03200 | 421 | 44 875.56 | 8.62 | 41.43 | ‒0.350 | 细胞核 |
| 35 | SC20515G03600 | 188 | 18 645.94 | 5.19 | 45.72 | 0.077 | 内质网 |
| 36 | SC20515G15920 | 297 | 30 795.28 | 6.03 | 45.86 | ‒0.344 | 细胞质 |
| 37 | SC20515G15930 | 371 | 38 266.75 | 9.51 | 57.11 | ‒0.444 | 细胞核 |
| 38 | SC20517G01110 | 419 | 43 832.83 | 9.80 | 60.72 | ‒0.565 | 细胞核 |
| 39 | SC20517G01140 | 377 | 40 278.69 | 9.24 | 45.25 | ‒0.194 | 线粒体 |
| 40 | SC20518G00200 | 446 | 45 545.07 | 9.85 | 55.40 | ‒0.301 | 线粒体 |
| 41 | SC20518G05780 | 315 | 32 853.94 | 8.36 | 57.93 | ‒0.355 | 细胞质 |
), ArticleFig(id=1237831262560375664, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=EN, label=Tab. 2, caption=
Ka and Ks values of MeAHL gene duplicates in cassava
, figureFileSmall=null, figureFileBig=null, tableContent=
| 类型Type | 基因ID1 Gene ID1 | 基因ID2 Gene ID2 | Ka值Ka value | Ks值Ks value |
|---|
| DSD | SC20505G12810 | SC20501G12870 | 0.42 | |
| | SC20515G15920 | SC20517G01140 | 0.06 | 0.35 |
| | SC20515G15930 | SC20517G01110 | 0.10 | 0.45 |
| WGD | SC20501G06620 | SC20502G02120 | 0.10 | 0.38 |
| | SC20501G07550 | SC20502G02960 | 0.02 | 0.23 |
| | SC20501G07590 | SC20502G03000 | 0.04 | 0.33 |
| | SC20501G15380 | SC20502G10750 | 0.10 | 0.46 |
| | SC20501G17460 | SC20502G12840 | 0.25 | 0.55 |
| | SC20501G24820 | SC20505G03450 | 0.06 | 0.32 |
| | SC20501G25490 | SC20505G04200 | 0.06 | 0.28 |
| | SC20501G25540 | SC20505G04360 | 0.07 | 0.36 |
| | SC20502G02120 | SC20505G03450 | 0.37 | 1.53 |
| | SC20502G02960 | SC20505G04200 | 0.16 | 2.55 |
| | SC20502G03000 | SC20505G04360 | 0.24 | 1.57 |
| | SC20502G10750 | SC20505G12910 | 0.29 | 1.73 |
| | SC20502G13390 | SC20518G05780 | 0.08 | 0.47 |
| | SC20503G15750 | SC20515G03600 | 0.04 | 0.36 |
| | SC20504G00910 | SC20508G02230 | 0.55 | 1.50 |
| | SC20505G04360 | SC20506G12640 | 0.31 | 1.12 |
| | SC20505G12910 | SC20518G00200 | 0.16 | 0.44 |
| | SC20506G12640 | SC20514G03200 | 0.14 | 0.38 |
| | SC20507G11650 | SC20510G02590 | 0.13 | 0.46 |
| | SC20508G13380 | SC20509G13950 | 0.09 | 0.42 |
| | SC20508G13400 | SC20509G13920 | 0.05 | 0.36 |
| | SC20508G02230 | SC20509G05090 | 0.16 | 0.39 |
| | SC20509G05090 | SC20511G15260 | 0.48 | 1.88 |
| | SC20509G13920 | SC20515G03600 | 0.17 | NaN |
), ArticleFig(id=1237831262631678835, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237814983862580082, language=CN, label=表2, caption=
木薯MeAHL复制基因的Ka和Ks值
, figureFileSmall=null, figureFileBig=null, tableContent=
| 类型Type | 基因ID1 Gene ID1 | 基因ID2 Gene ID2 | Ka值Ka value | Ks值Ks value |
|---|
| DSD | SC20505G12810 | SC20501G12870 | 0.42 | |
| | SC20515G15920 | SC20517G01140 | 0.06 | 0.35 |
| | SC20515G15930 | SC20517G01110 | 0.10 | 0.45 |
| WGD | SC20501G06620 | SC20502G02120 | 0.10 | 0.38 |
| | SC20501G07550 | SC20502G02960 | 0.02 | 0.23 |
| | SC20501G07590 | SC20502G03000 | 0.04 | 0.33 |
| | SC20501G15380 | SC20502G10750 | 0.10 | 0.46 |
| | SC20501G17460 | SC20502G12840 | 0.25 | 0.55 |
| | SC20501G24820 | SC20505G03450 | 0.06 | 0.32 |
| | SC20501G25490 | SC20505G04200 | 0.06 | 0.28 |
| | SC20501G25540 | SC20505G04360 | 0.07 | 0.36 |
| | SC20502G02120 | SC20505G03450 | 0.37 | 1.53 |
| | SC20502G02960 | SC20505G04200 | 0.16 | 2.55 |
| | SC20502G03000 | SC20505G04360 | 0.24 | 1.57 |
| | SC20502G10750 | SC20505G12910 | 0.29 | 1.73 |
| | SC20502G13390 | SC20518G05780 | 0.08 | 0.47 |
| | SC20503G15750 | SC20515G03600 | 0.04 | 0.36 |
| | SC20504G00910 | SC20508G02230 | 0.55 | 1.50 |
| | SC20505G04360 | SC20506G12640 | 0.31 | 1.12 |
| | SC20505G12910 | SC20518G00200 | 0.16 | 0.44 |
| | SC20506G12640 | SC20514G03200 | 0.14 | 0.38 |
| | SC20507G11650 | SC20510G02590 | 0.13 | 0.46 |
| | SC20508G13380 | SC20509G13950 | 0.09 | 0.42 |
| | SC20508G13400 | SC20509G13920 | 0.05 | 0.36 |
| | SC20508G02230 | SC20509G05090 | 0.16 | 0.39 |
| | SC20509G05090 | SC20511G15260 | 0.48 | 1.88 |
| | SC20509G13920 | SC20515G03600 | 0.17 | NaN |
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