Article(id=1237016046385820550, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237016039171608726, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2025.09.015, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1741795200000, receivedDateStr=2025-03-13, revisedDate=null, revisedDateStr=null, acceptedDate=1746633600000, acceptedDateStr=2025-05-08, onlineDate=1772857208105, onlineDateStr=2026-03-07, pubDate=1758729600000, pubDateStr=2025-09-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1772857208105, onlineIssueDateStr=2026-03-07, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1772857208105, creator=13701087609, updateTime=1772857208105, updator=13701087609, issue=Issue{id=1237016039171608726, tenantId=1146029695717560320, journalId=1235980609244409860, year='2025', volume='46', issue='9', pageStart='2031', pageEnd='2286', issueExtLink='null', onlineDate='null', pubDate='null', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1772857206385, creator=13701087609, updateTime=1773049161445, updator=13701087609, preIssue=null, nextIssue=null, ext={EN=IssueExt(id=1237821157118890427, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237016039171608726, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1237821157118890428, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1237016039171608726, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null}, startPage=2173, endPage=2180, ext={EN=ArticleExt(id=1237016048029987748, articleId=1237016046385820550, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Analysis of Genetic Diversity of Pitaya Canker Pathogen
Neoscytalidium dimidiatum in Guangdong and Guangxi, columnId=1236292524264968282, journalTitle=Chinese Journal of Tropical Crops, columnName=Plant Protection & Bio-safety, runingTitle=null, highlight=null, articleAbstract=
Guangdong and Guangxi are the major production regions of pitaya and the common area for pitaya canker. Understanding the genetic diversity of Neoscytalidium dimidiatum is of great significance for the disease prevention and control. This research focused on four geographical population of N. dimidiatum mainly collected from Guangxi and Guangdong. To obtain the genetic fingerprints of N. dimidiatum, the isolates were amplified using ISSR genetic molecular markers and further analyzed the genetic diversity. The tested N. dimidiatum isolates were amplified with eight ISSR primers, resulting in 203 bands and the percentage of polymorphic sites was 31.7%, with the genetic similarity coefficient for any two germplasm resources ranged from 0.7619-1.0000. When the genetic similarity coefficient was 0.90 on the UPGMA cluster, all isolates could be divided into three groups, but the genetic groups were not closely related to the geographical distribution. The results of principal component analysis indicated considerable overlap between the four geographical groups and there were no relatively independent geographical poputation. This study proved that there existed lower level of genetic polymorphism in the isolates and there was frequent exchange of inoculum source between different places. The study would provide the scientific basis for researching the genetic architecture and pathogen surveillance of pitaya canker pathogen N. dimidiatum.
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广东和广西是我国火龙果主要产区,也是火龙果溃疡病的常发区,明确这些地区火龙果溃疡病菌新暗色柱节孢(Neoscytalidium dimidiatum)的遗传多样性对溃疡病的防治具有重要意义。本研究以主要来源于广西、广东的4个火龙果溃疡病菌地理群体为试验对象,利用ISSR分子标记扩增以获得其指纹图谱,并进一步分析溃疡病菌的遗传分化情况。供试的火龙果溃疡病菌经过8条ISSR引物扩增,得到203条条带,多态性位点为31.7%,菌株间遗传相似系数在0.7619~1.0000之间。在UPGMA聚类树上遗传相似系数为0.90时可分为3个类群,但遗传类群与地理分布上并无紧密联系。主成分分析结果显示,4个地理群体重叠性较高,不存在相对独立的地理种群。本研究证明我国火龙果溃疡病菌遗传多样性水平较低,各地之间存在频繁的菌源交流,该结果可为新暗色柱节孢的种群遗传结构和火龙果溃疡病病原菌监测的研究提供科学依据。
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林珊宇(1983—),女,博士,助理研究员,研究方向:植物病理学。
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林珊宇(1983—),女,博士,助理研究员,研究方向:植物病理学。
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林珊宇(1983—),女,博士,助理研究员,研究方向:植物病理学。
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Juglans regia L.) in France, refAbstract=null), Reference(id=1237023469372765034, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, doi=null, pmid=null, pmcid=null, year=2022, volume=13, issue=null, pageStart=null, pageEnd=null, url=null, language=null, rfNumber=[26], rfOrder=31, authorNames=YU C M, DIAO Y F, LU Q, ZHAO J P, CUI S N, XIONG X, LU A N, ZHANG X Y, LIU H X, journalName=Frontiers in Microbiology, refType=null, unstructuredReference=
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12: 652802., articleTitle=Phylogenomics of plant-associated Botryosphaeriaceae species, refAbstract=null)], funds=[Fund(id=1237023462322139808, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, awardId=桂农科2021ZX25, language=CN, fundingSource=广西农业科学院基本科研业务专项(桂农科2021ZX25), fundOrder=null, country=null), Fund(id=1237023462431191720, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, awardId=桂农科2021YT062, language=CN, fundingSource=广西农业科学院基本科研业务专项(桂农科2021YT062), fundOrder=null, country=null)], companyList=[AuthorCompany(id=1237023456714354998, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, xref=null, ext=[AuthorCompanyExt(id=1237023456722743607, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, companyId=1237023456714354998, language=EN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=Guangxi Key Laboratory of Biology for Crop Diseases and Insect Pests / Plant Protection Research Institute, Guangxi Academy of Agricultural Sciences / Key Laboratory of Green Prevention and Control on Fruits and Vegetables in South China, Ministry of Agriculture and Rural Affairs, Nanning, Guangxi 530007, China), AuthorCompanyExt(id=1237023456731132216, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, companyId=1237023456714354998, language=CN, country=null, province=null, city=null, postcode=null, companyName=null, departmentName=null, remark=广西作物病虫害生物学重点实验室/广西壮族自治区农业科学院植物保护研究所/农业农村部华南果蔬绿色防控重点实验室,广西南宁 530007)])], figs=[ArticleFig(id=1237023460694749743, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=EN, label=Fig. 1, caption=
Visualized heat map of genetic similarity coefficients of 77 N. dimidiatum isolates, figureFileSmall=m5WLIrI6YhysVpil0jAavw==, figureFileBig=qgTypBCdejGZ9NKPrpRP+Q==, tableContent=null), ArticleFig(id=1237023460812190271, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=CN, label=图1, caption=
77株新暗色柱节孢遗传相似系数的可视化热图, figureFileSmall=m5WLIrI6YhysVpil0jAavw==, figureFileBig=qgTypBCdejGZ9NKPrpRP+Q==, tableContent=null), ArticleFig(id=1237023460912853574, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=EN, label=Fig. 2, caption=
ISSR cluster analysis of 77 N. dimidiatum isolates, figureFileSmall=o+2oyMMbZKHNq0EiosmUhQ==, figureFileBig=ZTdWH++PLNT42XfgZUiaDQ==, tableContent=null), ArticleFig(id=1237023461038682706, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=CN, label=图2, caption=
77个新暗色柱节孢菌株的ISSR聚类分析图, figureFileSmall=o+2oyMMbZKHNq0EiosmUhQ==, figureFileBig=ZTdWH++PLNT42XfgZUiaDQ==, tableContent=null), ArticleFig(id=1237023461156123226, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=EN, label=Fig. 3, caption=
Discriminant analysis of principal component scatter-plot, figureFileSmall=0jEJ47WrBQ4Pi0NjYdbKyA==, figureFileBig=3bXzmfo/LlV8nTGXM8O85A==, tableContent=null), ArticleFig(id=1237023461260980836, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=CN, label=图3, caption=
主成分分析散点图, figureFileSmall=0jEJ47WrBQ4Pi0NjYdbKyA==, figureFileBig=3bXzmfo/LlV8nTGXM8O85A==, tableContent=null), ArticleFig(id=1237023461386809963, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=EN, label=Tab. 1, caption=
Geographic population delineation of sampling sites
, figureFileSmall=null, figureFileBig=null, tableContent=
群体 Group | 采集地点(样本) Sampling location(Sample) | 菌株数 Number of strains |
|---|
| G1 | 广州(H38,S1)、阳江(YJ10-1,YJ11-1,YJ12-1,YJ13-1,YJ15-1,YJH1-1,YJH2-2,YJH3-2)、东莞(DG6,DG7,DG8,DG10,PY3)、惠州(HZ1-1,HZ7-1,HZ8-1,HZ10-1)、江门(JM1-1,JM2-1,JM3-1,JM4-2,JM4-4,JM5,JM6-2,JM13-1)、揭阳(JY2-1,JY3-1,JY10-1,JY13-1,JY15-1)、茂名(GZ1-1,GZ2-1)、梅州(MZH1-1,MZH2-1)、深圳(SZ2-1,SX3-2)和漳州(LH2-1) | 39 |
| G2 | 南宁(LA1,LJ3,LX1,LY2,NT1,SQ2,YLY1,KM1)、贵港(GG1-1,GG6-1)、桂林(GL2)、梧州(CX3,WZ3)和玉林(BL3,BL5,BL8,XY4,XY9,RX1,RY2) | 20 |
| G3 | 湛江(ZJ1)、北海(BH5,BH9,HF2-5,HF4)、钦州(MP2-2,MP2-7,MP2-9,MP10-2,MP2-3)和防城港(FQ4) | 11 |
| G4 | 崇左(NM2,NM3,NM8)、百色(PG2,BS4)、玉溪(YN5-2)和黔南(QN1) | 7 |
), ArticleFig(id=1237023461487473268, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=CN, label=表1, caption=
采样点地理群体划分
, figureFileSmall=null, figureFileBig=null, tableContent=
群体 Group | 采集地点(样本) Sampling location(Sample) | 菌株数 Number of strains |
|---|
| G1 | 广州(H38,S1)、阳江(YJ10-1,YJ11-1,YJ12-1,YJ13-1,YJ15-1,YJH1-1,YJH2-2,YJH3-2)、东莞(DG6,DG7,DG8,DG10,PY3)、惠州(HZ1-1,HZ7-1,HZ8-1,HZ10-1)、江门(JM1-1,JM2-1,JM3-1,JM4-2,JM4-4,JM5,JM6-2,JM13-1)、揭阳(JY2-1,JY3-1,JY10-1,JY13-1,JY15-1)、茂名(GZ1-1,GZ2-1)、梅州(MZH1-1,MZH2-1)、深圳(SZ2-1,SX3-2)和漳州(LH2-1) | 39 |
| G2 | 南宁(LA1,LJ3,LX1,LY2,NT1,SQ2,YLY1,KM1)、贵港(GG1-1,GG6-1)、桂林(GL2)、梧州(CX3,WZ3)和玉林(BL3,BL5,BL8,XY4,XY9,RX1,RY2) | 20 |
| G3 | 湛江(ZJ1)、北海(BH5,BH9,HF2-5,HF4)、钦州(MP2-2,MP2-7,MP2-9,MP10-2,MP2-3)和防城港(FQ4) | 11 |
| G4 | 崇左(NM2,NM3,NM8)、百色(PG2,BS4)、玉溪(YN5-2)和黔南(QN1) | 7 |
), ArticleFig(id=1237023461588136573, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=EN, label=Tab. 2, caption=
Screening results of ISSR analysis primer annealing temperature
, figureFileSmall=null, figureFileBig=null, tableContent=
引物 Primer | 退火温度 Annealing temperature/℃ | 引物序列(5′–3′) Primer sequence(5′–3′) |
|---|
| (GTG)5 | 59 | GTGGTGGTGGTGGTG |
| U02 | 60 | DHBCGACGACGACGACGA |
| UBC 880 | 46 | GATAGATAGACAGACA |
| VCA13 | 51 | AGAGAGAGAGAGAGAGS |
| VCA21 | 60 | GTCGTCGTCGTCGTCGTC |
| VCA22 | 61 | GTGGTGGTGGTGGTGGTG |
| VCA25 | 54 | CACCACCACCACGC |
| YHY(GT)7G | 48 | YHYGTGTGTGTGTGTGTG |
), ArticleFig(id=1237023461697188483, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=CN, label=表2, caption=
ISSR分析引物退火温度的筛选结果
, figureFileSmall=null, figureFileBig=null, tableContent=
引物 Primer | 退火温度 Annealing temperature/℃ | 引物序列(5′–3′) Primer sequence(5′–3′) |
|---|
| (GTG)5 | 59 | GTGGTGGTGGTGGTG |
| U02 | 60 | DHBCGACGACGACGACGA |
| UBC 880 | 46 | GATAGATAGACAGACA |
| VCA13 | 51 | AGAGAGAGAGAGAGAGS |
| VCA21 | 60 | GTCGTCGTCGTCGTCGTC |
| VCA22 | 61 | GTGGTGGTGGTGGTGGTG |
| VCA25 | 54 | CACCACCACCACGC |
| YHY(GT)7G | 48 | YHYGTGTGTGTGTGTGTG |
), ArticleFig(id=1237023461789463180, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=EN, label=Tab. 3, caption=
Genetic information of 77 N. dimidiatum isolates amplified by 8 ISSR primers
, figureFileSmall=null, figureFileBig=null, tableContent=
引物 Primer | 等位基因观测数Na | 有效等位基因数Ne | Nei's基因多样性指数H | Shannon信息指数I | 位点数loci | 多态性条带数NP | 多态性位点百分率P/% |
|---|
| U02 | 1.143 | 1.024 | 0.021 | 0.039 | 7 | 1 | 14.3 |
| M13 | 1.500 | 1.259 | 0.145 | 0.220 | 4 | 2 | 50.0 |
| (GTG)5 | 1.667 | 1.103 | 0.088 | 0.169 | 6 | 4 | 66.7 |
| VCA13 | 1.750 | 1.069 | 0.060 | 0.124 | 4 | 3 | 75.0 |
| VCA21 | 1.000 | 1.000 | 0.000 | 0.000 | 5 | 0 | 0 |
| AVC22 | 1.333 | 1.053 | 0.042 | 0.076 | 6 | 2 | 33.3 |
| VCA25 | 1.143 | 1.075 | 0.049 | 0.075 | 7 | 1 | 14.3 |
| YHY(GT)7G | 1.000 | 1.000 | 0.000 | 0.000 | 4 | 0 | 0 |
| 平均值 | 1.317 | 1.073 | 0.051 | 0.088 | 5.375 | 1.625 | 31.7 |
), ArticleFig(id=1237023461919486613, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1237016046385820550, language=CN, label=表3, caption=
8个ISSR引物扩增77株新暗色柱节孢获得的遗传信息
, figureFileSmall=null, figureFileBig=null, tableContent=
引物 Primer | 等位基因观测数Na | 有效等位基因数Ne | Nei's基因多样性指数H | Shannon信息指数I | 位点数loci | 多态性条带数NP | 多态性位点百分率P/% |
|---|
| U02 | 1.143 | 1.024 | 0.021 | 0.039 | 7 | 1 | 14.3 |
| M13 | 1.500 | 1.259 | 0.145 | 0.220 | 4 | 2 | 50.0 |
| (GTG)5 | 1.667 | 1.103 | 0.088 | 0.169 | 6 | 4 | 66.7 |
| VCA13 | 1.750 | 1.069 | 0.060 | 0.124 | 4 | 3 | 75.0 |
| VCA21 | 1.000 | 1.000 | 0.000 | 0.000 | 5 | 0 | 0 |
| AVC22 | 1.333 | 1.053 | 0.042 | 0.076 | 6 | 2 | 33.3 |
| VCA25 | 1.143 | 1.075 | 0.049 | 0.075 | 7 | 1 | 14.3 |
| YHY(GT)7G | 1.000 | 1.000 | 0.000 | 0.000 | 4 | 0 | 0 |
| 平均值 | 1.317 | 1.073 | 0.051 | 0.088 | 5.375 | 1.625 | 31.7 |
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