Article(id=1277254124831904761, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1277253949203809194, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2026.01.018, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1758384000000, receivedDateStr=2025-09-21, revisedDate=null, revisedDateStr=null, acceptedDate=1761494400000, acceptedDateStr=2025-10-27, onlineDate=1782450713594, onlineDateStr=2026-06-26, pubDate=1769270400000, pubDateStr=2026-01-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1782450713594, onlineIssueDateStr=2026-06-26, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1782450713594, creator=13701087609, updateTime=1782450713594, updator=13701087609, issue=Issue{id=1277253949203809194, tenantId=1146029695717560320, journalId=1235980609244409860, year='2026', volume='47', issue='1', pageStart='1', pageEnd='280', issueExtLink='null', onlineDate='null', pubDate='1769270400000', pubDateStr='2026-01-25', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1782450671721, creator='13701087609', updateTime=1782451647086, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1277258041263256431, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1277253949203809194, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1277258041263256432, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1277253949203809194, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=186, endPage=196, ext={EN=ArticleExt(id=1277254125549130747, articleId=1277254124831904761, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Comparative Transcriptome Analysis of Soil-cultivated Roots and Aeroponic Roots of Dalbergia odorifera T. Chen, columnId=1236256430337085821, journalTitle=Chinese Journal of Tropical Crops, columnName=Omics & Biotechnology, runingTitle=null, highlight=null, articleAbstract=

Dalbergia odorifera is a rare perennial plant valued for both its medicinal and aromatic properties. However, its long growth cycle and slow maturation to meet traditional medicinal standards are major constraints for its rational utilization and development. To investigate the active components in its roots and facilitate the use, this study utilized aeroponic cultivation to rapidly obtain a substantial quantity of high-quality roots from one-year-old seedlings. Comparative transcriptome analysis between soil-cultivated roots and aeroponic roots was conducted using high-throughput sequencing to identify key genes and pathways involved in root secondary metabolite biosynthesis. The results revealed 7731 significantly differentially expressed genes (DEGs) between the two groups, with 4447 upregulated and 3284 downregulated. GO, KEGG and GSEA enrichment analyses indicated that the DEGs were primarily associated with defense signal transduction, amino acid metabolism, and the biosynthesis of secondary metabolites. Specifically, sesquiterpene and triterpene biosynthesis pathways and defense signal transduction pathways were highly expressed in soil-cultivated roots, whereas amino acid metabolism and flavonoid biosynthesis pathways were upregulated in aeroponic roots. Further analysis identified candidate key DEGs related to secondary metabolite synthesis: evm.TU.scaffold_100.907, MSTRG.3788, evm.TU.scaffold_233.200, evm.TU.scaffold_111.78 and evm.TU.scaffold_5.71 in the flavonoid pathway, and evm.TU.scaffold_36.788, MSTRG.8652, evm.TU.scaffold_40.382, MSTRG.27285 and MSTRG.28295 in the sesquiterpene pathway. This study preliminarily elucidates the differences in gene expression between soil-cultivated roots and aeroponic roots, uncovering genes and pathways regulating secondary metabolite synthesis. The findings would provide valuable data and references for the further development and utilization of D. odorifera root resources.

, authors=null, authorsList=Mengyao XUE, Yiyao PANG, Xuelian QIN, Ruoting ZHAN, Xinye MA, authorCompany=null, correspAuthors=Xinye MA, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1277254126765478909, articleId=1277254124831904761, tenantId=1146029695717560320, journalId=1235980609244409860, language=CN, title=降香黄檀土培根与气雾根的转录组比较分析, columnId=1236256430517440904, journalTitle=热带作物学报, columnName=组学与生物技术, runingTitle=null, highlight=null, articleAbstract=

降香黄檀是一种珍稀多年生香药两用植物，但其生长周期长且成材缓慢是该植物合理利用与开发的重要限制因素。为了解降香黄檀根系活性成分并对其进行合理利用，本研究以降香黄檀一年生幼苗根为对象，利用气雾栽培技术在短期内获得大量且优质的气雾根。通过高通量测序技术对降香黄檀土培根与气雾栽培根2组根系转录组进行测序及差异比较，挖掘降香黄檀根系次生代谢物合成的关键基因和通路。结果表明，降香黄檀土培根与气雾根比较组中共筛选出7731个显著性差异表达基因（DEGs），其中4447个上调，3284个下调。经GO、KEGG富集分析及GSEA富集分析表明，这些基因主要富集在防御信号转导、氨基酸代谢、次级代谢产物的生物合成等通路。其中倍半萜和三萜生物合成通路、防御信号转导通路在降香黄檀土培根中高表达，氨基酸代谢通路、黄酮类成分生物合成通路在气雾根中高表达。进一步对其相关通路分析，挖掘出降香黄檀次生代谢物合成的相关基因，即黄酮代谢通路中的候选关键差异基因evm.TU.scaffold_100.907、MSTRG.3788、evm.TU.scaffold_233.200、evm.TU.scaffold_111.78、evm.TU.scaffold_5.71与倍半萜合成通路的候选关键差异基因evm.TU.scaffold_36.788、MSTRG.8652、evm.TU.scaffold_40.382、MSTRG.27285、MSTRG.28295。本研究通过比较降香黄檀土培根与气雾根的转录组差异，初步揭示了2组间基因表达层面差异，挖掘其调控次生代谢物合成的基因和通路。通过以上探索，为后续降香黄檀根部资源的深度研发积累数据和提供参考。

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^2.Maoming Sub-center, Gua- ngdong Provincial Laboratory of Lingnan Modern Agricultural Science and Technology, Maoming, Guangdong 525000, China, bio=null, bioImg=null, bioContent=null, aboutCorrespAuthor=null), CN=AuthorExt(id=1277254130108338187, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1277254124831904761, authorId=1277254129290448902, language=CN, stringName=薛萌垚, firstName=null, middleName=null, lastName=null, prefix=null, suffix=null, authorComment=null, nameInitials=null, affiliation=null, department=null, xref=^{1, 2}, address=^1.广州中医药大学中药学院/岭南中药资源教育部重点实验室/国家中成药工程技术研究中心南药研发实验室，广东广州　510006
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薛萌垚（2001—），女，硕士研究生，研究方向：芳香药用植物资源学。

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薛萌垚（2001—），女，硕士研究生，研究方向：芳香药用植物资源学。

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