Article(id=1276844395018186893, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276844393709568941, articleNumber=null, orderNo=null, doi=10.3969/j.issn.1000-2561.2024.10.003, pmid=null, cstr=null, oa=null, hot=null, price=null, onlineType=0, articleFormat=0, articleType=null, articleTypeStr=null, receivedDate=1711987200000, receivedDateStr=2024-04-02, revisedDate=1716480000000, revisedDateStr=2024-05-24, acceptedDate=null, acceptedDateStr=null, onlineDate=1782353026393, onlineDateStr=2026-06-25, pubDate=1729785600000, pubDateStr=2024-10-25, doiRegisterDate=null, doiRegisterDateStr=null, onlineIssueDate=1782353026393, onlineIssueDateStr=2026-06-25, onlineJustAcceptDate=null, onlineJustAcceptDateStr=null, onlineFirstDate=null, onlineFirstDateStr=null, sourceXml=null, magXml=null, createTime=1782353026393, creator=13701087609, updateTime=1782353026393, updator=13701087609, issue=Issue{id=1276844393709568941, tenantId=1146029695717560320, journalId=1235980609244409860, year='2024', volume='45', issue='10', pageStart='1999', pageEnd='2242', issueExtLink='null', onlineDate='null', pubDate='1729785600000', pubDateStr='2024-10-25', beforeIssueId=null, nextIssueId=null, price=null, status=1, issueComplete=1, articleOrder=1, issueType=-1, specialIssue=null, createTime=1782353026082, creator='13701087609', updateTime=1782355588483, updator='13701087609', preIssue=null, nextIssue=null, articleTotal=null, ext={EN=IssueExt(id=1276855141311574992, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276844393709568941, language=EN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=), CN=IssueExt(id=1276855141311574993, tenantId=1146029695717560320, journalId=1235980609244409860, issueId=1276844393709568941, language=CN, specialIssueTitle=, coverIllustrator=null, specialIssueEditor=, specialIssueAbout=)}, issueFiles=null, downloadFileDto=null}, startPage=2025, endPage=2034, ext={EN=ArticleExt(id=1276844395307593871, articleId=1276844395018186893, tenantId=1146029695717560320, journalId=1235980609244409860, language=EN, title=Preliminary Study on the Cloning, Subcellular Localization and Expression of LcWRKY47 in Litchi and its Function in Delaying Fruit Browning, columnId=1236256430337085821, journalTitle=Chinese Journal of Tropical Crops, columnName=Omics & Biotechnology, runingTitle=null, highlight=null, articleAbstract=

Litchi (Litchi chinensis Sonn.) is one of the important economic crops in subtropical areas. However, it is difficult to store litchi after picking and easy to browning, which is one of the biggest problems in the preservation process. WRKY family is a common transcription factor in plants, which mainly regulates physiological processes such as plant stress response and maturation. In order to research the effect of WRKY on the ripening and senescence process of litchi fruit after harvest, this study took Feiziao litchi as the experimental object, and cloned LcWRKY47 gene. The gene length was 1077 bp. The protein contains WRKY conserved domain. The secondary structure is dominated by random curling, accounting for 65.64%, and the tertiary structure is dominated by random curling and α-helix. Through motif analysis and multiple sequence alignment, LcWRKY47 protein was found to be a class II WRKY transcription factor. Phylogenetic analysis showed that LcWRKY47 in litchi was closely related to DlWRKY47 in longan, which are all classified as Sapindaceae. Subcellular localization experiments showed that LcWRKY47 protein was localized in the nucleus. RT-qPCR analysis showed that after treatment with 2 mmol/L oxalic acid, the expression of LcWRKY47 gene in the peel and pulp of litchi showed the same trend, which increased first and then decreased, and the expression level of LcWRKY47 gene in the treatment group was significantly higher than that in the control group after storage, suggesting that this transcription factor plays a positive role in the regulation of oxalic acid in the ripening and senescence process of litchi fruit. Overexpression of LcWRKY47 gene showed that the expression level of LcWRKY47 in transgenic fruits was significantly higher than that in control fruits, and the senescence process and browning of transgenic litchi was significantly better than that in treatment group. In conclusion, LcWRKY47 transcription factor may play a regulatory role in the senescence and browning process of litchi.

, authors=null, authorsList=Nanpu CHENG, Xin WANG, Muhammad Muzammal ASLAM, Yuanzhi SHAO, Wen LI, authorCompany=null, correspAuthors=Wen LI, authorNote=null, correspAuthorsNote=null, copyrightStatement=null, copyrightOwner=null, extLink=null, articleAbsUrl=null, sourceXml=null, magXml=null, pdfUrl=null, pdf=null, pdfFileSize=null, pdfExtLink=null, richHtmlUrl=null, mobilePdfUrl=null, reviewReport=null, pdfFirstPage=null, abstractGraph=null, abstractGraphContent=null, abstractVideo=null, citation=null, cebUrl=null, magXmlContent=null, mapNumber=null, fund=null), CN=ArticleExt(id=1276844397283111073, articleId=1276844395018186893, tenantId=1146029695717560320, journalId=1235980609244409860, language=CN, title=荔枝LcWRKY47基因的克隆、亚细胞定位、表达及延缓果实褐变的功能初探, columnId=1236256430517440904, journalTitle=热带作物学报, columnName=组学与生物技术, runingTitle=null, highlight=null, articleAbstract=

荔枝(Litchi chinensis Sonn.)是亚热带地区重要的经济作物之一,但荔枝采后难贮存、易褐变,是目前保鲜过程中存在的最大问题之一。WRKY家族是植物中常见的一类转录因子,主要调控植物的逆境胁迫响应以及成熟衰老等生理过程。为了探究WRKY对采后荔枝果实成熟衰老的影响,本研究以妃子笑荔枝为试验对象,克隆LcWRKY47基因,长度为1077 bp;LcWRKY47编码的蛋白中含有WRKY保守结构域,二级结构以无规则卷曲为主,占比65.64%,三级结构主要为无规则卷曲和α-螺旋。通过motif分析及多序列比对,发现LcWRKY47蛋白属于第Ⅱ类WRKY转录因子;系统进化分析树表明荔枝LcWRKY47与同为无患子科的龙眼DlWRKY47亲缘关系最近;亚细胞定位试验表明,LcWRKY47蛋白定位在细胞核中;RT-qPCR分析表明,2 mmol/L草酸处理后LcWRKY47基因在荔枝果皮和果肉中的表达趋势相同,均先升后降,后期处理组表达量均显著高于对照组,推测草酸处理后该转录因子在荔枝果实成熟衰老过程中起正调控作用。过表达LcWRKY47基因发现,转基因果实中LcWRKY47的表达量显著高于对照果实,且转基因荔枝衰老褐变情况明显优于处理组。综上推测,LcWRKY47转录因子可能在荔枝衰老与褐变过程中起着调节作用。

, authors=

程南谱(1997—),男,硕士研究生,研究方向:果树采后保鲜。

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* 李雯(LI Wen),E-mail:
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2.海南大学热带农林学院,海南海口 570228, bio={"content":"

程南谱(1997—),男,硕士研究生,研究方向:果树采后保鲜。

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程南谱(1997—),男,硕士研究生,研究方向:果树采后保鲜。

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M: DL2000 DNA marker; O: ORF

, figureFileSmall=KyG8tYr4STPabZT/GiFkpg==, figureFileBig=jJmXWKV6nrIFWUC+EUKk8Q==, tableContent=null), ArticleFig(id=1276844408284770524, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 2, caption=Signal peptide (A), transmembrane structure (B) and phosphorylation site analysis (C) of the protein encoded by LcWRKY47 gene, figureFileSmall=ZUoega8K7MiBzqJiZ/raWA==, figureFileBig=u3bpeTZ7N5Ti6naXSnymCA==, tableContent=null), ArticleFig(id=1276844408364462301, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=CN, label=图2, caption=LcWRKY47基因编码蛋白的信号肽(A)、跨膜结构(B)及磷酸化位点分析(C), figureFileSmall=ZUoega8K7MiBzqJiZ/raWA==, figureFileBig=u3bpeTZ7N5Ti6naXSnymCA==, tableContent=null), ArticleFig(id=1276844408427376862, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 3, caption=Secondary structure (A) and tertiary structure (B) of LcWRKY47 protein, figureFileSmall=wrPJ+tl116Wzz/jwSYazDA==, figureFileBig=rxmm+vfYRhMiWsYaFli0tA==, tableContent=null), ArticleFig(id=1276844408486097119, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=CN, label=图3, caption=LcWRKY47蛋白的二级结构(A)和三级结构(B), figureFileSmall=wrPJ+tl116Wzz/jwSYazDA==, figureFileBig=rxmm+vfYRhMiWsYaFli0tA==, tableContent=null), ArticleFig(id=1276844408679035104, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 4, caption=Motif analysis of LcWRKY47 protein (A) and homologous sequence alignment with other species (B), figureFileSmall=ulWv06PJUb/qCm9Y9R+/ag==, figureFileBig=5v33rB+wO3z4NvvFNLFyLw==, tableContent=null), ArticleFig(id=1276844408737755361, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=CN, label=图4, caption=LcWRKY47蛋白motif分析(A)与其他物种同源序列比对(B), figureFileSmall=ulWv06PJUb/qCm9Y9R+/ag==, figureFileBig=5v33rB+wO3z4NvvFNLFyLw==, tableContent=null), ArticleFig(id=1276844408809058530, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 5, caption=LcWRKY47 phylogenetic tree analysis, figureFileSmall=+Ap/Bx42o247AMItU730NA==, figureFileBig=rMscxgi/zSPTXGPKJxb7pA==, tableContent=null), ArticleFig(id=1276844408871973091, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=CN, label=图5, caption=LcWRKY47系统进化树分析, figureFileSmall=+Ap/Bx42o247AMItU730NA==, figureFileBig=rMscxgi/zSPTXGPKJxb7pA==, tableContent=null), ArticleFig(id=1276844408930693348, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 6, caption=Subcellular localization of LcWRKY47 protein, figureFileSmall=6YwIOFKPxfQTXLzH6LjNaw==, figureFileBig=eOMuWo3r4eWNSlbI56I2lg==, tableContent=null), ArticleFig(id=1276844408985219301, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=CN, label=图6, caption=LcWRKY47蛋白质亚细胞定位, figureFileSmall=6YwIOFKPxfQTXLzH6LjNaw==, figureFileBig=eOMuWo3r4eWNSlbI56I2lg==, tableContent=null), ArticleFig(id=1276844409043939558, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 7, caption=Expression characteristics of LcWRKY47 gene in peel and pulp treated with oxalic acid

CK: Blank control; OA: Oxalic acidtreatment; Different lowercase letters indicate significant differences between treatments (P<0.05).

, figureFileSmall=aAyp30YihuNt/Y4TY1iXRw==, figureFileBig=xJE31WXX4/IsaCegOKs/lw==, tableContent=null), ArticleFig(id=1276844409111048423, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=CN, label=图7, caption=LcWRKY47基因在草酸处理下果皮和果肉中的表达特征分析

CK:空白对照;OA:草酸处理;不同小写字母表示处理间差异显著(P<0.05)。

, figureFileSmall=aAyp30YihuNt/Y4TY1iXRw==, figureFileBig=xJE31WXX4/IsaCegOKs/lw==, tableContent=null), ArticleFig(id=1276844409178157288, tenantId=1146029695717560320, journalId=1235980609244409860, articleId=1276844395018186893, language=EN, label=Fig. 8, caption=Appearance of litchi overexpressing LcWRKY47 gene (A) and expression level of LcWRKY47 gene after overexpression (B)

CK: Blank control; OE: overexpression of LcWRKY47; Different lowercase letters indicate significant differences between treatments (P<0.05).

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CK:空白对照;OE:LcWRKY47过表达;不同小写字母表示处理间差异显著(P<0.05)

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荔枝LcWRKY47基因的克隆、亚细胞定位、表达及延缓果实褐变的功能初探
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程南谱 1, 2 , 王鑫 1, 3 , Muhammad Muzammal ASLAM 1, 2 , 邵远志 1, 4 , 李雯 1, 2, *
热带作物学报 | 组学与生物技术 2024,45(10): 2025-2034
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热带作物学报 |组学与生物技术 2024 , 45 (10) : 2025 -2034
荔枝LcWRKY47基因的克隆、亚细胞定位、表达及延缓果实褐变的功能初探
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程南谱1, 2, 王鑫1, 3, Muhammad Muzammal ASLAM1, 2, 邵远志1, 4, 李雯1, 2, *
作者信息
  • 1.海南大学三亚南繁研究院,海南三亚 572025
  • 2.海南大学热带农林学院,海南海口 570228
  • 3.海南大学食品科学与工程学院,海南海口 570228
  • 4.海南大学生命健康学院,海南海口 570228
通讯作者:
* 李雯(LI Wen),E-mail:
Preliminary Study on the Cloning, Subcellular Localization and Expression of LcWRKY47 in Litchi and its Function in Delaying Fruit Browning
Nanpu CHENG1, 2, Xin WANG1, 3, Muhammad Muzammal ASLAM1, 2, Yuanzhi SHAO1, 4, Wen LI1, 2, *
Affiliations
  • 1.Sanya Nanfan Research Institute of Hainan University, Sanya, Hainan 572025, China
  • 2.School of Tropical Agriculture and Forestry, Hainan University, Haikou, Hainan 570228, China
  • 3.School of Food Science and Engineering, Hainan University, Haikou, Hainan 570228, China
  • 4.School of Life and Health Science, Hainan University, Haikou, Hainan 570228, China
出版时间: 2024-10-25 doi: 10.3969/j.issn.1000-2561.2024.10.003
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荔枝(Litchi chinensis Sonn.)是亚热带地区重要的经济作物之一,但荔枝采后难贮存、易褐变,是目前保鲜过程中存在的最大问题之一。WRKY家族是植物中常见的一类转录因子,主要调控植物的逆境胁迫响应以及成熟衰老等生理过程。为了探究WRKY对采后荔枝果实成熟衰老的影响,本研究以妃子笑荔枝为试验对象,克隆LcWRKY47基因,长度为1077 bp;LcWRKY47编码的蛋白中含有WRKY保守结构域,二级结构以无规则卷曲为主,占比65.64%,三级结构主要为无规则卷曲和α-螺旋。通过motif分析及多序列比对,发现LcWRKY47蛋白属于第Ⅱ类WRKY转录因子;系统进化分析树表明荔枝LcWRKY47与同为无患子科的龙眼DlWRKY47亲缘关系最近;亚细胞定位试验表明,LcWRKY47蛋白定位在细胞核中;RT-qPCR分析表明,2 mmol/L草酸处理后LcWRKY47基因在荔枝果皮和果肉中的表达趋势相同,均先升后降,后期处理组表达量均显著高于对照组,推测草酸处理后该转录因子在荔枝果实成熟衰老过程中起正调控作用。过表达LcWRKY47基因发现,转基因果实中LcWRKY47的表达量显著高于对照果实,且转基因荔枝衰老褐变情况明显优于处理组。综上推测,LcWRKY47转录因子可能在荔枝衰老与褐变过程中起着调节作用。

荔枝  /  WRKY转录因子  /  基因克隆  /  亚细胞定位  /  表达分析

Litchi (Litchi chinensis Sonn.) is one of the important economic crops in subtropical areas. However, it is difficult to store litchi after picking and easy to browning, which is one of the biggest problems in the preservation process. WRKY family is a common transcription factor in plants, which mainly regulates physiological processes such as plant stress response and maturation. In order to research the effect of WRKY on the ripening and senescence process of litchi fruit after harvest, this study took Feiziao litchi as the experimental object, and cloned LcWRKY47 gene. The gene length was 1077 bp. The protein contains WRKY conserved domain. The secondary structure is dominated by random curling, accounting for 65.64%, and the tertiary structure is dominated by random curling and α-helix. Through motif analysis and multiple sequence alignment, LcWRKY47 protein was found to be a class II WRKY transcription factor. Phylogenetic analysis showed that LcWRKY47 in litchi was closely related to DlWRKY47 in longan, which are all classified as Sapindaceae. Subcellular localization experiments showed that LcWRKY47 protein was localized in the nucleus. RT-qPCR analysis showed that after treatment with 2 mmol/L oxalic acid, the expression of LcWRKY47 gene in the peel and pulp of litchi showed the same trend, which increased first and then decreased, and the expression level of LcWRKY47 gene in the treatment group was significantly higher than that in the control group after storage, suggesting that this transcription factor plays a positive role in the regulation of oxalic acid in the ripening and senescence process of litchi fruit. Overexpression of LcWRKY47 gene showed that the expression level of LcWRKY47 in transgenic fruits was significantly higher than that in control fruits, and the senescence process and browning of transgenic litchi was significantly better than that in treatment group. In conclusion, LcWRKY47 transcription factor may play a regulatory role in the senescence and browning process of litchi.

litchi  /  WRKY transcription factor  /  gene cloning  /  subcellular localization  /  expression analysis
程南谱, 王鑫, Muhammad Muzammal ASLAM, 邵远志, 李雯. 荔枝LcWRKY47基因的克隆、亚细胞定位、表达及延缓果实褐变的功能初探. 热带作物学报, 2024 , 45 (10) : 2025 -2034 . DOI: 10.3969/j.issn.1000-2561.2024.10.003
Nanpu CHENG, Xin WANG, Muhammad Muzammal ASLAM, Yuanzhi SHAO, Wen LI. Preliminary Study on the Cloning, Subcellular Localization and Expression of LcWRKY47 in Litchi and its Function in Delaying Fruit Browning[J]. Chinese Journal of Tropical Crops, 2024 , 45 (10) : 2025 -2034 . DOI: 10.3969/j.issn.1000-2561.2024.10.003
荔枝(Litchi chinensis Sonn.)是无患子科荔枝属的亚热带常绿果树,是非呼吸跃变型水果,原产于中国南方[1],主要产区为广东、广西、福建、海南等地区,果肉多汁,口感极佳,营养丰富,深受大众喜爱,经济价值高,有“岭南佳果”的美称[2],是我国亚热带地区重要的果树品种之一,也是我国特色经济果树[3]。但由于荔枝在夏季高温高湿的特殊时期成熟,果实含水量高,新陈代谢旺盛,采收后营养物质会被迅速消耗[4],生理变化剧烈,同时果皮上的病原菌迅速生长,容易引起荔枝褐变和变质,导致荔枝商品经济价值下降[5],荔枝自身的衰老褐变严重影响到荔枝的采后贮藏品质。草酸(oxalic acid,OA)是一种普遍存在的有机酸,在各种代谢过程中起着重要作用[6]。据报道,OA可以通过提高果实抗病能力和抗氧化活性,延缓呼吸速率和果实成熟衰老,有效地保持园艺产品的品质[7]
WRKY转录因子家族是植物中最大的转录因子家族之一[8]。第1个WRKY基因SPE1于1994年从甘薯中分离得到[9],随着其他植物的基因组测序,越来越多的WRKY基因在不同植物物种中得到鉴定和克隆,已在拟南芥、番茄、小麦、大豆、水稻和玉米等许多物种中得到鉴定[10]。转录因子通常包含4个功能区,即转录调控域(激活区和抑制区)、DNA结合域、寡聚化位点和核定位信号,使转录因子在不同情况发挥不同功能[11]。之所以将其命名为WRKY转录因子,是因为WRKY蛋白质序列包含60个氨基酸残基组成的DNA结合域,并且该结构域的N端具有WRKYGOK序列组成的WRKY高度保守结构域[12]。然而,在少数WRKY蛋白中,WRKYGQK的氨基酸序列存在不同的突变类型,有WRKYGEK、WRKYGMK、WRKYGKK、WSKYEQK或WIKYGEN等。一般而言N端至少存在1个WRKY保守结构域,C端则包含1个锌指结构基序C2H2(C-X4-5-C-X22-23-H-X-H)或C2HC(C-X7-C-X23-H-X-C)[13]。根据WRKY结构域的数量和锌指基序的类型,WRKY转录因子可分为3个主要亚家族,Ⅰ类亚家族有2个含有C2H2型锌指基序的WRKY结构域,Ⅱ类亚家族有1个含有C2H2型锌指基序的WRKY结构域,Ⅲ类亚家族具有1个含有C2H2型锌指基序的WRKY结构域[14]
大量研究证明,WRKY转录因子在植物的生长发育中起着重要作用,参与调节植物多种生理过程,拟南芥AtWRKY23调控根毛发育[15],小麦TaWRKY71调控种子萌发等过程[16],玉米ZmWRKY11调控种皮发育[17],棉花GhWRKY15调控茎生长[18]、参与碳水化合物合成、次生代谢产物合成,拟南芥AtWRKY75通过影响水杨酸(salicylic acid,SA)积累和H2O2清除参与调控叶片衰老过程[19],芸苔型油菜BnWRKY47能够促进氮从老叶到幼叶或种子的再动员,使幼叶优先生长,抑制整株植株的衰老死亡[20]
迄今为止,越来越多WRKY转录因子在植物生长发育以及生物与非生物胁迫中的功能得到研究。但目前关于荔枝的WRKY转录因子的研究较少,对荔枝LcWRKY47基因的研究未见报道。因此,本研究以采后妃子笑荔枝为试验材料,克隆LcWRKY47基因,进行生物信息学分析和亚细胞定位分析,同时通过RT-qPCR(quantitative real-time,PCR)分析LcWRKY47基因在果皮和果肉中的表达水平,进一步利用过表达体系分析LcWRKY47转录因子调控采后荔枝成熟衰老的功能,为深入分析WRKY转录因子在采后荔枝果实中的生物学功能提供理论依据。
选用妃子笑荔枝鲜果为试验材料,挑选无病虫害、无机械损伤、形状、大小、外观颜色一致的荔枝果实。以2 mmol/L OA溶液浸泡10 min的荔枝果实为处理组,以清水浸泡10 min为对照组,处理后随机选取30个荔枝为1组,每组3个重复,分别装入保鲜袋中,贮藏在8 ℃、相对湿度为85%~90%的培养箱中,每2 d取1次样,用液氮将所取样品速冻后保存在-80 ℃超低温冰箱中,用于后续试验。
以荔枝果皮为材料,使用改良的CTAB法从果皮、果肉中提取RNA[21],随后分别逆转录成cDNA。使用NOVA逆转录试剂盒(All-in-One First-Strand Synthesis MasterMix with dsDNase)进行cDNA的合成。利用Primer 6软件设计LcWRKY47的全长扩增特异性引物,序列分别为LcWRKY47-F:5′-ATGTCAAGTTCTAAAATGTC-3′,LcWRKY47-R:5′-CTAGTTGGTAGAGAAAGTGG-3′。用2×Phanta® Max Master Mix(Dye plus)高保真酶进行PCR扩增,PCR反应程序如下:95 ℃预变性30 s;95 ℃变性15 s,55 ℃退火15 s,72 ℃延伸30 s,35个循环;最后72 ℃反应5 min,得到LcWRKY47的开放阅读框(open reading frame,ORF)序列,PCR产物经过琼脂糖凝胶电泳检测,随后用Omega胶回收试剂盒(E.Z.N.A. Gel Extraction Kit)回收目的基因条带。纯化产物连接pCE2 TA/Blunt-Zero载体(Vazyme TA/Blunt-Zero Cloning Kit),然后将连接产物转化至大肠杆菌感受态(维地生物,E. coli DH5α),挑取阳性菌落于LB培养基中培养,送生工生物工程(上海)股份有限公司测序。
利用ExPASy-ProtParam(https://web.expasy.org/protparam)分析蛋白的分子量、等电点、不稳定系数等理化性质,利用ExPASy-ProtScale(https://web.expasy.org/protscale)分析蛋白的亲疏水性,利用TMHMM(https://services.healthtech.dtu.dk/services/TMHMM-2.0)和SignalP(https://services.healthtech.dtu.dk/services/SignalP-6.0)分析蛋白质的跨膜结构及信号肽预测。利用SOPMA(https://npsa-prabi.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa%20_sopma.html)分析LcWRKY47蛋白的二级结构,并使用SWISS-MODEL(https://swissmodel.expasy.org)分析预测LcWRKY47蛋白的三维结构;利用在线网站Clustal Omega(https://www.ebi.ac.uk/jdispatcher/msa/clustalo)进行多序列比对;利用在线网站MEME 5.5.0(https://memesuite.org/meme)分析motif结构,将motif数设置为8;使用MEGA 5软件构建系统进化树,并使用邻接法构建。
利用Novopro Bioscience(https://www.novoprolabs.com/tools/nls-signal-prediction)预测蛋白的核定位序列(nuclear localization sequence,NLS)。使用洋葱内表皮作为侵染材料,通过洋葱内表皮转化法进行亚细胞定位分析[22]。设计双酶切正向引物F:TCTAGAATGTCAAGTTCTAAAATGTCAGCCC,反向引物R:GGTACCGTTGGTAGAGAAAGTGGTGCAAGA。通过双酶切法将LcWRKY47基因构建到pCAMBIA1300-GFP载体上,生成35S::LcWRKY47-GFP融合表达载体,将重组质粒转化至GV3101农杆菌,制备OD600为0.8~1.0的悬浮液,再将洋葱内表皮(1.5 cm×1.5 cm)浸泡在悬浮液中减压10 min,用滤纸吸去洋葱内表皮上多余的菌液,再将其转移到铺有滤纸的MS固体培养基上,放置在25 ℃培养箱中避光培养2 d后,制成玻片,在荧光生物摄像显微镜下观察荧光信号。
利用Primer 5软件设计LcWRKY47基因定量引物,分别为正向引物F:5′-CACGGCAATGGCTAACACAACC-3′,反向引物R:5′-AATGGTGCAGAAGCGGAGAGG-3′;内参基因引物Actin-F:5′-ACCGTATGAGCAAGGAAATCACTG-3′,Actin-R: 5′-TCGTCGTACTCACCCTTTGAAATC-3′。使用试剂盒(TOLOBIO 2×Q3 SYBR qPCR Master Mix)进行RT-qPCR扩增,采用2-ΔΔCt法计算基因的相对表达量,每次测定均有3个重复。
设计双酶切正向引物F:5′-GGATCCATGTCAAGTTCTAAAATGTC-3′,反向引物R:5′-GAATTCCTAGTTGGTAGAGAAAGTGG-3′。酶切位点为:上游BamH Ⅰ(GGATCC),下游EcoRⅠ(GAATTC)。通过双酶切法将扩增的LcWRKY47编码序列构建到pGreenII 62-SK载体上,并将SKLcWRKY47和空SK载体转化至农杆菌GV3101,其中空载体组作为对照。参考GONG等[23]的方法,并进行一些修改,在果实茎部附近注射1 mL侵染液,然后将注射过的荔枝果实在侵染液中减压浸泡20 min,对荔枝果实进行侵染,随后将侵染过的荔枝果实置于(25±1)℃、相对湿度为85%~90%条件下进行培养。在注射后的第1天和第3天进行取样,通过RT-qPCR测定对应基因的表达量,每次测定均有3个重复。
使用Office 2021软件进行数据统计与计算,使用SPSS 22.0软件分析数据差异显著性(IBM Corp,美国),采用Duncan法分析比较差异数据显著性(P<0.05),使用GraphPad Prism 8软件对LcWRKY47基因相对表达量进行作图。
使用LcWRKY47的全长引物克隆出ORF长度为1077 bp的扩增片段(图1A)。LcWRKY47基因编码358个氨基酸,对LcWRKY47蛋白理化性质进行预测,结果显示LcWRKY47蛋白分子式为C1651H2622N490O525S21,相对分子质量为38 409.21 kDa,总原子数为5309,理论等电点为8.84;氨基酸组成中带负电残基数量(Asp+Glu)为26个,带正电残基数量(Arg+Lys)为31个,蛋白质中脂肪族侧链氨基酸指数为58.94,总平均亲水性值是-0.535,表现为亲水性(图1B),不稳定性指数是54.03,为不稳定蛋白。综上,该蛋白为碱性不稳定亲水蛋白。
预测结果显示LcWRKY47蛋白中不存在信号肽(图2A),也并未发现跨膜区域(图2B),不是跨膜蛋白。LcWRKY47蛋白的磷酸化可能发生在丝氨酸(Ser)和苏氨酸(Thr)位点上,主要为丝氨酸位点,说明此蛋白发挥调控功能可能是以丝氨酸位点的磷酸化修饰为主(图2C)。LcWRKY47蛋白的二级结构以无规则卷曲为主,占比为65.64%,其余为α-螺旋,占21.79%、延伸链占9.50%、β-折叠占3.07%(图3A)。运用SWISS-MODEL在线程序对荔枝LcWRKY47蛋白的三维结构进行建模分析,发现LcWRKY47蛋白质的主要结构为无规则卷曲和α-螺旋(图3B),其结果与二级结构的预测结果相一致。
选取9个与LcWRKY47同源性较高的WRKY转录因子进行motif分析,结果显示motif结构相似,在所有蛋白中均含有相同的6种motif;与荔枝LcWRKY47所含motif数目和种类一致的有2个物种,分别为甜橙和陆地棉(图4A);氨基酸同源序列比对结果显示其氨基酸序列均包含1个WRKY结构域和1个C2H2型锌指基序。上述结果表明LcWRKY47蛋白属于第Ⅱ类WRKY转录因子(图4B)。
选取无患子科植物、漆树科植物、芸香科植物以及大戟科植物等不同物种WRKY基因构建进化树,结果显示,荔枝LcWRKY47与同为无患子科的龙眼DlWRKY47聚在一起,亲缘关系最近,其次是杧果、阿月浑子和甜橙,而橡胶树、木薯、葡萄以及河岸葡萄则与荔枝LcWRKY47亲缘关系较远(图5)。
Novopro Bioscience工具预测分析LcWRKY47蛋白的核定位序列为PFRKARVSVRA,位于蛋白序列中98~108位置。在荧光生物摄像显微镜下观察到,35S:: GFP对照洋葱内表皮细胞中的细胞核和细胞壁均检测到绿色荧光信号,而35S:: LcWRKY47-GFP融合蛋白的绿色荧光信号仅出现在细胞核中,这表明荔枝LcWRKY47蛋白在洋葱内表皮细胞中定位于细胞核,符合转录因子所具有的核定位特征(图6)。
外源OA处理后,LcWRKY47基因在荔枝果皮和果肉中的表达水平如图7所示。在荔枝果皮中LcWRKY47基因的表达量呈现先上调后下调的趋势(图7A),CK在8 d达到最大值,然后逐渐下降,而OA处理组在10 d达到最大值,之后呈现下降的趋势,且OA处理组只有在2 d时低于CK,8 d后显著高于CK;在荔枝果肉中LcWRKY47基因的表达量呈现先上调后下调的趋势(图7B),CK在6 d达到最大值,OA处理组在8 d达到最大值,之后均呈现下降的趋势,相较于CK,8 d后处理组LcWRKY47基因的表达水平整体高于CK。LcWRKY47在荔枝果皮与果肉中的表达模式相同,在贮藏后期表达量均上调,且显著高于CK,表明LcWRKY47转录因子可能在OA调控果实成熟衰老过程中起正调控作用。
为了验证LcWRKY47能否调控荔枝衰老褐变,将LcWRKY47基因转入完整的荔枝果实。从图8A中可以看出,在3 d时,CK的整果外观失色与褐变情况比转基因荔枝严重,而此时转基因荔枝并未出现褐变等明显衰老现象。从图8B中可以看出,在转基因果实中LcWRKY47的表达量高于CK。综上,LcWRKY47转录因子可能通过延缓荔枝的衰老与褐变来维持果实采后品质。
在植物生长发育的过程中,WRKY转录因子起着不可忽视的作用[24]。WRKY蛋白能够作为激活因子或阻遏因子参与细胞质和细胞核过程,包括从细胞器或细胞质到细胞核的信号传递事件,调控植物对生物和非生物刺激的反应过程,参与协调发育过程中的内部信号。WRKY可与靶基因启动子中的W-box[TGACC(A/T)]结合,激活或抑制下游基因的表达,调控其应激反应[25]。最新的研究发现WRKY在蔬菜叶片成熟、衰老等代谢过程中的重要作用,FAN等[26]从中国白菜叶片中克隆出BrWRKY65,发现BrWRKY65的表达随着采后叶片叶绿素降解和变黄而上调,并且可以调控与叶绿素降解相关的BrNYC1、BrSGR1和BrDIN1等3个衰老相关基因,从而影响采后叶片的衰老。有研究报道WRKY在果实成熟、衰老等多种生理过程中的重要作用,JI等[27]发现桃果实中PpSDHPpCOX15等能量代谢基因能与PpWRKY46互作并被PpWRKY46上调表达,调节桃子的能量代谢,维持桃果实的品质与抗病性,延缓桃果实的成熟衰老。综上,推测WRKY在荔枝果实中可能存在类似的生物学功能,但目前在荔枝中的WRKY转录因子研究却鲜有报道。本研究中的荔枝LcWRKY47基因属于WRKYⅡ类亚家族,蛋白具有亲水性,蛋白不稳定,不包含信号肽,无跨膜结构;二级结构和三级结构预测中包括α-螺旋、β-折叠、延伸链和无规则卷曲,以无规则卷曲为主,同时具有WRKY保守结构域和1个C2H2型锌指基序,系统进化树分析表明LcWRKY47与同为无患子科的DlWRKY47亲缘关系最近。
妃子笑荔枝主要产于海南、广东,皮薄肉厚核小,香味浓郁,多汁爽口,是中早熟优质品种之一,具有很高的经济价值和研究价值[28]。然而荔枝采后难贮存、易变质、果皮易褐变等情况一直是荔枝保鲜目前存在的现实问题[29]。OA与植物的抗微生物、生物和非生物抗性有关[30],是极好的抗氧化剂,可以增强超氧阴离子的清除能力,阻止活性氧的形成[31],活性氧的产物之一是丙二醛,是植物细胞膜脂质过氧化的产物,造成细胞衰老和死亡[32]。OA处理可通过延缓呼吸速率和成熟,降低丙二醛浓度,延迟衰老,增强抗病能力,有效保持园艺产品的新鲜度和品质[33]。近年来,OA处理采后果实的保鲜效果受到广泛关注,已有研究报道OA能够延迟香蕉的成熟,抑制杧果的腐烂,并防止荔枝果实产生褐变[3435]。OA作为一种果实保鲜剂,可能通过影响植物转录因子的表达来延缓果实的衰老与褐变,从而起到保鲜的效果。因此本研究将采后妃子笑荔枝作为试验材料,使用OA进行处理,研究LcWRKY47基因的表达模式。本研究鉴定的LcWRKY47基因定量结果表明,LcWRKY47在荔枝果皮和果肉中的表达趋势一致,在储藏后期LcWRKY47基因表达量与CK相比差异显著,均显著高于CK,处于较高表达水平。将LcWRKY47连接到过表达SK载体,对荔枝果实进行侵染实验,使LcWRKY47基因得到过表达,结果表明从外观上看,过表达后的荔枝果实比CK衰老及褐变程度更低,同时LcWRKY47基因的表达量显著高于CK。综合以上结果推测,LcWRKY47转录因子可能在荔枝衰老与褐变过程中起着一定的调节作用,延缓了果实的衰老与褐变,保持采后妃子笑荔枝的贮藏品质。关于LcWRKY47基因后续的功能验证还有待更深入的研究。
  • 海南省院士团队创新中心建设项目(SQ2021YSPTJXRWS0074)
  • 海南省热带果蔬保鲜联盟(HDLM201901)
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2024年第45卷第10期
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doi: 10.3969/j.issn.1000-2561.2024.10.003
  • 接收时间:2024-04-02
  • 首发时间:2026-06-25
  • 出版时间:2024-10-25
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  • 收稿日期:2024-04-02
  • 修回日期:2024-05-24
基金
海南省院士团队创新中心建设项目(SQ2021YSPTJXRWS0074)
海南省热带果蔬保鲜联盟(HDLM201901)
作者信息
    1.海南大学三亚南繁研究院,海南三亚 572025
    2.海南大学热带农林学院,海南海口 570228
    3.海南大学食品科学与工程学院,海南海口 570228
    4.海南大学生命健康学院,海南海口 570228

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* 李雯(LI Wen),E-mail:
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2种不同金属材料的力学参数

Family
属数
Number of
genus
种数
Number of
species
占总种数比例
Percentage of
total species (%)

Genus
种数
Number of
species
占总种数比例
Percentage of total
species (%)
鹅膏菌科Amanitaceae 2 11 5.26 鹅膏菌属 Amanita 10 4.78
小菇科 Mycenaceae 2 12 5.74 丝盖伞属 Inocybe 5 2.39
多孔菌科 Polyporaceae 8 14 6.70 蜡蘑属 Laccaria 5 2.39
红菇科 Russulaceae 3 23 11.00 小皮伞属 Marasmius 6 2.87
小菇属 Mycena 11 5.26
光柄菇属 Pluteus 5 2.39
红菇属 Russula 17 8.13
栓菌属 Trametes 5 2.39
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